RNA–Protein interactions for RNA: ENST00000463184.1

VARS-221, Transcript of valyl-tRNA synthetase, humanhuman

TSL 2

Gene VARS, Length 619 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-221ENST00000463184 NEUROD1Q13562 356 aa28.3■■■□□ 2.12
VARS-221ENST00000463184 COL18A1P39060 1754 aa28.29■■■□□ 2.12
VARS-221ENST00000463184 PLSCR1O15162 318 aa28.29■■■□□ 2.12
VARS-221ENST00000463184 CPSF1Q10570 1443 aaKnown RBP28.28■■■□□ 2.12
VARS-221ENST00000463184 PEAK1Q9H792 1746 aa28.27■■■□□ 2.12
VARS-221ENST00000463184 BCL11BQ9C0K0 894 aaPredicted RBP28.26■■■□□ 2.11
VARS-221ENST00000463184 LRRC37A3O60309 1634 aa28.25■■■□□ 2.11
VARS-221ENST00000463184 CSB-PGBD3P0DP91 1061 aa28.24■■■□□ 2.11
VARS-221ENST00000463184 CARD10Q9BWT7 1032 aa28.24■■■□□ 2.11
VARS-221ENST00000463184 AKAP12Q02952 1782 aa28.24■■■□□ 2.11
VARS-221ENST00000463184 SOX12O15370 315 aa28.23■■■□□ 2.11
VARS-221ENST00000463184 SPON1Q9HCB6 807 aa28.23■■■□□ 2.11
VARS-221ENST00000463184 KTN1Q86UP2 1357 aaKnown RBP28.23■■■□□ 2.11
VARS-221ENST00000463184 BCL9O00512 1426 aa28.22■■■□□ 2.11
VARS-221ENST00000463184 MARCH10Q8NA82 808 aaPredicted RBP28.22■■■□□ 2.11
VARS-221ENST00000463184 SBF2Q86WG5 1849 aa28.21■■■□□ 2.11
VARS-221ENST00000463184 KCNQ2O43526 872 aa28.21■■■□□ 2.11
VARS-221ENST00000463184 RGPD3A6NKT7 1758 aaPredicted RBP28.2■■■□□ 2.11
VARS-221ENST00000463184 RGPD4Q7Z3J3 1758 aa28.2■■■□□ 2.11
VARS-221ENST00000463184 EXOC5O00471 708 aa28.18■■■□□ 2.1
VARS-221ENST00000463184 SBNO2Q9Y2G9 1366 aa28.18■■■□□ 2.1
VARS-221ENST00000463184 WNK3Q9BYP7 1800 aa28.18■■■□□ 2.1
VARS-221ENST00000463184 PTF1AQ7RTS3 328 aa28.17■■■□□ 2.1
VARS-221ENST00000463184 PPP1R1BQ9UD71 204 aaPredicted RBP28.17■■■□□ 2.1
VARS-221ENST00000463184 NFAT5O94916 1531 aa28.17■■■□□ 2.1
VARS-221ENST00000463184 CCDC7Q96M83 1385 aa28.16■■■□□ 2.1
VARS-221ENST00000463184 RGPD5Q99666 1765 aa28.16■■■□□ 2.1
VARS-221ENST00000463184 ABCC6O95255 1503 aa28.15■■■□□ 2.1
VARS-221ENST00000463184 USP31Q70CQ4 1352 aa28.14■■■□□ 2.1
VARS-221ENST00000463184 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.14■■■□□ 2.1
VARS-221ENST00000463184 PROM2Q8N271 834 aa28.14■■■□□ 2.1
VARS-221ENST00000463184 CARD11Q9BXL7 1154 aa28.13■■■□□ 2.09
VARS-221ENST00000463184 ANO8Q9HCE9 1232 aaPredicted RBP28.12■■■□□ 2.09
VARS-221ENST00000463184 MON2Q7Z3U7 1717 aa28.11■■■□□ 2.09
VARS-221ENST00000463184 HDGFL2Q7Z4V5 671 aaPredicted RBP28.09■■■□□ 2.09
VARS-221ENST00000463184 TMC1Q8TDI8 760 aa28.09■■■□□ 2.09
VARS-221ENST00000463184 NINLQ9Y2I6 1382 aa28.09■■■□□ 2.09
VARS-221ENST00000463184 TXNRD1Q16881 649 aa28.08■■■□□ 2.09
VARS-221ENST00000463184 NME9Q86XW9 330 aa28.08■■■□□ 2.09
VARS-221ENST00000463184 CD163L1Q9NR16 1453 aa28.08■■■□□ 2.09
VARS-221ENST00000463184 DCAF8L1A6NGE4 600 aa28.07■■■□□ 2.08
VARS-221ENST00000463184 ERBB3P21860 1342 aa28.07■■■□□ 2.08
VARS-221ENST00000463184 TNS2Q63HR2 1409 aa28.07■■■□□ 2.08
VARS-221ENST00000463184 NLRP2Q9NX02 1062 aa28.06■■■□□ 2.08
VARS-221ENST00000463184 USP54Q70EL1 1684 aa28.05■■■□□ 2.08
VARS-221ENST00000463184 SLC12A5Q9H2X9 1139 aa28.05■■■□□ 2.08
VARS-221ENST00000463184 YY1P25490 414 aa28.04■■■□□ 2.08
VARS-221ENST00000463184 PUS7Q96PZ0 661 aaKnown RBP28.04■■■□□ 2.08
VARS-221ENST00000463184 STK32BQ9NY57 414 aa28.04■■■□□ 2.08
VARS-221ENST00000463184 TERF2IPQ9NYB0 399 aa28.04■■■□□ 2.08
VARS-221ENST00000463184 IL2RBP14784 551 aa28.03■■■□□ 2.08
VARS-221ENST00000463184 EDC4Q6P2E9 1401 aaKnown RBP28.02■■■□□ 2.08
VARS-221ENST00000463184 CASZ1Q86V15 1759 aa28.02■■■□□ 2.08
VARS-221ENST00000463184 PDGFDQ9GZP0 370 aaPredicted RBP28.02■■■□□ 2.08
VARS-221ENST00000463184 SLC15A2Q16348 729 aa28.01■■■□□ 2.07
VARS-221ENST00000463184 ANKRD24Q8TF21 1146 aa28■■■□□ 2.07
VARS-221ENST00000463184 TONSLQ96HA7 1378 aa27.99■■■□□ 2.07
VARS-221ENST00000463184 ZBTB7AO95365 584 aa27.99■■■□□ 2.07
VARS-221ENST00000463184 ACSBG1Q96GR2 724 aa27.98■■■□□ 2.07
VARS-221ENST00000463184 LTN1O94822 1766 aa27.97■■■□□ 2.07
VARS-221ENST00000463184 TRIM26Q12899 539 aaPredicted RBP27.97■■■□□ 2.07
VARS-221ENST00000463184 A0A1W2PP64 1363 aa27.97■■■□□ 2.07
VARS-221ENST00000463184 NHSQ6T4R5 1651 aa27.95■■■□□ 2.07
VARS-221ENST00000463184 PTGER2P43116 358 aa27.95■■■□□ 2.06
VARS-221ENST00000463184 ATF5Q9Y2D1 282 aaPredicted RBP27.95■■■□□ 2.06
VARS-221ENST00000463184 IP6K1Q92551 441 aa27.94■■■□□ 2.06
VARS-221ENST00000463184 SLC24A1O60721 1099 aa27.92■■■□□ 2.06
VARS-221ENST00000463184 MTFR1LQ9H019 292 aa27.92■■■□□ 2.06
VARS-221ENST00000463184 TESK2Q96S53 571 aa27.89■■■□□ 2.06
VARS-221ENST00000463184 ST20-MTHFSA0A0A6YYL1 179 aa27.87■■■□□ 2.05
VARS-221ENST00000463184 COG3Q96JB2 828 aa27.87■■■□□ 2.05
VARS-221ENST00000463184 LTV1Q96GA3 475 aaPredicted RBP27.86■■■□□ 2.05
VARS-221ENST00000463184 MYOM1P52179 1685 aa27.86■■■□□ 2.05
VARS-221ENST00000463184 KAT6BQ8WYB5 2073 aa27.85■■■□□ 2.05
VARS-221ENST00000463184 SGIP1Q9BQI5 828 aa27.85■■■□□ 2.05
VARS-221ENST00000463184 SYT17Q9BSW7 474 aa27.85■■■□□ 2.05
VARS-221ENST00000463184 DDX54Q8TDD1 881 aaKnown RBP27.84■■■□□ 2.05
VARS-221ENST00000463184 FHDC1Q9C0D6 1143 aaPredicted RBP27.84■■■□□ 2.05
VARS-221ENST00000463184 BTAF1O14981 1849 aa27.83■■■□□ 2.05
VARS-221ENST00000463184 LRRC4BQ9NT99 713 aa27.82■■■□□ 2.04
VARS-221ENST00000463184 PAPPAQ13219 1627 aa27.81■■■□□ 2.04
VARS-221ENST00000463184 FAM208AQ9UK61 1670 aaKnown RBP27.81■■■□□ 2.04
VARS-221ENST00000463184 HOXC9P31274 260 aa27.81■■■□□ 2.04
VARS-221ENST00000463184 AMPHP49418 695 aa27.81■■■□□ 2.04
VARS-221ENST00000463184 MAP3K19Q56UN5 1328 aa27.81■■■□□ 2.04
VARS-221ENST00000463184 ZNF827Q17R98 1081 aa27.8■■■□□ 2.04
VARS-221ENST00000463184 SLC27A3Q5K4L6 730 aa27.8■■■□□ 2.04
VARS-221ENST00000463184 ARXQ96QS3 562 aa27.79■■■□□ 2.04
VARS-221ENST00000463184 ANKRD36BQ8N2N9 1353 aa27.77■■■□□ 2.04
VARS-221ENST00000463184 FBLN1P23142 703 aa27.76■■■□□ 2.03
VARS-221ENST00000463184 AKT1S1Q96B36 256 aa27.76■■■□□ 2.03
VARS-221ENST00000463184 ZCRB1Q8TBF4 217 aaKnown RBP27.75■■■□□ 2.03
VARS-221ENST00000463184 SLC16A10Q8TF71 515 aa27.75■■■□□ 2.03
VARS-221ENST00000463184 PRIM1P49642 420 aaKnown RBP27.74■■■□□ 2.03
VARS-221ENST00000463184 SYTL4Q96C24 671 aaPredicted RBP27.74■■■□□ 2.03
VARS-221ENST00000463184 RTL1A6NKG5 1358 aa27.73■■■□□ 2.03
VARS-221ENST00000463184 MAP3K5Q99683 1374 aa27.73■■■□□ 2.03
VARS-221ENST00000463184 TMF1P82094 1093 aa27.72■■■□□ 2.03
VARS-221ENST00000463184 FYB1O15117 783 aa27.71■■■□□ 2.03
VARS-221ENST00000463184 RRS1Q15050 365 aaKnown RBP27.7■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms