RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 TNS1Q9HBL0 1735 aaKnown RBP21.83■■□□□ 1.09
SKA3-204ENST00000462482 AXIN2Q9Y2T1 843 aa21.83■■□□□ 1.09
SKA3-204ENST00000462482 HDGFL2Q7Z4V5 671 aaPredicted RBP21.82■■□□□ 1.08
SKA3-204ENST00000462482 TMC1Q8TDI8 760 aa21.82■■□□□ 1.08
SKA3-204ENST00000462482 TONSLQ96HA7 1378 aa21.82■■□□□ 1.08
SKA3-204ENST00000462482 CARD10Q9BWT7 1032 aa21.81■■□□□ 1.08
SKA3-204ENST00000462482 SBNO2Q9Y2G9 1366 aa21.81■■□□□ 1.08
SKA3-204ENST00000462482 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.8■■□□□ 1.08
SKA3-204ENST00000462482 BCL11BQ9C0K0 894 aaPredicted RBP21.78■■□□□ 1.08
SKA3-204ENST00000462482 PIK3C2AO00443 1686 aa21.78■■□□□ 1.08
SKA3-204ENST00000462482 EXOC5O00471 708 aa21.77■■□□□ 1.08
SKA3-204ENST00000462482 PLSCR1O15162 318 aa21.77■■□□□ 1.08
SKA3-204ENST00000462482 TERF2IPQ9NYB0 399 aa21.77■■□□□ 1.08
SKA3-204ENST00000462482 CCDC7Q96M83 1385 aa21.76■■□□□ 1.07
SKA3-204ENST00000462482 PARP4Q9UKK3 1724 aaKnown RBP21.76■■□□□ 1.07
SKA3-204ENST00000462482 MARCH10Q8NA82 808 aaPredicted RBP21.74■■□□□ 1.07
SKA3-204ENST00000462482 SPON1Q9HCB6 807 aa21.74■■□□□ 1.07
SKA3-204ENST00000462482 PPP1R1BQ9UD71 204 aaPredicted RBP21.74■■□□□ 1.07
SKA3-204ENST00000462482 USP31Q70CQ4 1352 aa21.74■■□□□ 1.07
SKA3-204ENST00000462482 NME9Q86XW9 330 aa21.73■■□□□ 1.07
SKA3-204ENST00000462482 NLRP2Q9NX02 1062 aa21.73■■□□□ 1.07
SKA3-204ENST00000462482 SLC24A1O60721 1099 aa21.72■■□□□ 1.07
SKA3-204ENST00000462482 SLC12A5Q9H2X9 1139 aa21.72■■□□□ 1.07
SKA3-204ENST00000462482 PUS7Q96PZ0 661 aaKnown RBP21.71■■□□□ 1.07
SKA3-204ENST00000462482 KCNQ2O43526 872 aa21.7■■□□□ 1.06
SKA3-204ENST00000462482 BCL9O00512 1426 aa21.7■■□□□ 1.06
SKA3-204ENST00000462482 NFAT5O94916 1531 aa21.7■■□□□ 1.06
SKA3-204ENST00000462482 ABCC6O95255 1503 aa21.7■■□□□ 1.06
SKA3-204ENST00000462482 LRRC37A3O60309 1634 aa21.69■■□□□ 1.06
SKA3-204ENST00000462482 DCAF8L1A6NGE4 600 aa21.69■■□□□ 1.06
SKA3-204ENST00000462482 EDC4Q6P2E9 1401 aaKnown RBP21.69■■□□□ 1.06
SKA3-204ENST00000462482 COL18A1P39060 1754 aa21.69■■□□□ 1.06
SKA3-204ENST00000462482 ERBB3P21860 1342 aa21.68■■□□□ 1.06
SKA3-204ENST00000462482 RREB1Q92766 1687 aa21.68■■□□□ 1.06
SKA3-204ENST00000462482 AKAP12Q02952 1782 aa21.68■■□□□ 1.06
SKA3-204ENST00000462482 IL2RBP14784 551 aa21.66■■□□□ 1.06
SKA3-204ENST00000462482 ANKRD24Q8TF21 1146 aa21.66■■□□□ 1.06
SKA3-204ENST00000462482 PTF1AQ7RTS3 328 aa21.65■■□□□ 1.06
SKA3-204ENST00000462482 STK32BQ9NY57 414 aa21.65■■□□□ 1.06
SKA3-204ENST00000462482 NUP188Q5SRE5 1749 aa21.65■■□□□ 1.06
SKA3-204ENST00000462482 PEAK1Q9H792 1746 aa21.65■■□□□ 1.06
SKA3-204ENST00000462482 CD163L1Q9NR16 1453 aa21.64■■□□□ 1.06
SKA3-204ENST00000462482 TNS2Q63HR2 1409 aa21.64■■□□□ 1.06
SKA3-204ENST00000462482 A0A1W2PP64 1363 aa21.64■■□□□ 1.06
SKA3-204ENST00000462482 NINLQ9Y2I6 1382 aa21.64■■□□□ 1.06
SKA3-204ENST00000462482 TXNRD1Q16881 649 aa21.64■■□□□ 1.05
SKA3-204ENST00000462482 ST20-MTHFSA0A0A6YYL1 179 aa21.62■■□□□ 1.05
SKA3-204ENST00000462482 COG3Q96JB2 828 aa21.62■■□□□ 1.05
SKA3-204ENST00000462482 ANO8Q9HCE9 1232 aaPredicted RBP21.62■■□□□ 1.05
SKA3-204ENST00000462482 MON2Q7Z3U7 1717 aa21.61■■□□□ 1.05
SKA3-204ENST00000462482 PROM2Q8N271 834 aa21.61■■□□□ 1.05
SKA3-204ENST00000462482 IP6K1Q92551 441 aa21.6■■□□□ 1.05
SKA3-204ENST00000462482 ACSBG1Q96GR2 724 aa21.6■■□□□ 1.05
SKA3-204ENST00000462482 LTV1Q96GA3 475 aaPredicted RBP21.58■■□□□ 1.05
SKA3-204ENST00000462482 TESK2Q96S53 571 aa21.58■■□□□ 1.05
SKA3-204ENST00000462482 RGPD3A6NKT7 1758 aaPredicted RBP21.58■■□□□ 1.04
SKA3-204ENST00000462482 RGPD4Q7Z3J3 1758 aa21.58■■□□□ 1.04
SKA3-204ENST00000462482 AMPHP49418 695 aa21.57■■□□□ 1.04
SKA3-204ENST00000462482 SLC15A2Q16348 729 aa21.57■■□□□ 1.04
SKA3-204ENST00000462482 ZBTB7AO95365 584 aa21.56■■□□□ 1.04
SKA3-204ENST00000462482 TMF1P82094 1093 aa21.56■■□□□ 1.04
SKA3-204ENST00000462482 TRIM26Q12899 539 aaPredicted RBP21.56■■□□□ 1.04
SKA3-204ENST00000462482 WNK3Q9BYP7 1800 aa21.55■■□□□ 1.04
SKA3-204ENST00000462482 DDX54Q8TDD1 881 aaKnown RBP21.54■■□□□ 1.04
SKA3-204ENST00000462482 USP54Q70EL1 1684 aa21.53■■□□□ 1.04
SKA3-204ENST00000462482 YY1P25490 414 aa21.53■■□□□ 1.04
SKA3-204ENST00000462482 CDCA8Q53HL2 280 aa21.53■■□□□ 1.04
SKA3-204ENST00000462482 ATF5Q9Y2D1 282 aaPredicted RBP21.53■■□□□ 1.04
SKA3-204ENST00000462482 RGPD5Q99666 1765 aa21.52■■□□□ 1.04
SKA3-204ENST00000462482 MAP3K19Q56UN5 1328 aa21.52■■□□□ 1.03
SKA3-204ENST00000462482 ANKRD36BQ8N2N9 1353 aa21.51■■□□□ 1.03
SKA3-204ENST00000462482 SBF2Q86WG5 1849 aa21.51■■□□□ 1.03
SKA3-204ENST00000462482 HOXC9P31274 260 aa21.51■■□□□ 1.03
SKA3-204ENST00000462482 MTFR1LQ9H019 292 aa21.51■■□□□ 1.03
SKA3-204ENST00000462482 PDGFDQ9GZP0 370 aaPredicted RBP21.5■■□□□ 1.03
SKA3-204ENST00000462482 SYTL4Q96C24 671 aaPredicted RBP21.48■■□□□ 1.03
SKA3-204ENST00000462482 USP47Q96K76 1375 aa21.48■■□□□ 1.03
SKA3-204ENST00000462482 PTGER2P43116 358 aa21.46■■□□□ 1.03
SKA3-204ENST00000462482 SLC27A3Q5K4L6 730 aa21.46■■□□□ 1.03
SKA3-204ENST00000462482 ZCRB1Q8TBF4 217 aaKnown RBP21.46■■□□□ 1.03
SKA3-204ENST00000462482 GGNBP2Q9H3C7 697 aa21.46■■□□□ 1.03
SKA3-204ENST00000462482 NHSQ6T4R5 1651 aa21.46■■□□□ 1.03
SKA3-204ENST00000462482 RTL1A6NKG5 1358 aa21.46■■□□□ 1.03
SKA3-204ENST00000462482 LTN1O94822 1766 aa21.46■■□□□ 1.03
SKA3-204ENST00000462482 SMG6Q86US8 1419 aaKnown RBP21.46■■□□□ 1.03
SKA3-204ENST00000462482 FYB1O15117 783 aa21.44■■□□□ 1.02
SKA3-204ENST00000462482 FBLN1P23142 703 aa21.44■■□□□ 1.02
SKA3-204ENST00000462482 RRS1Q15050 365 aaKnown RBP21.44■■□□□ 1.02
SKA3-204ENST00000462482 RAPGEF4Q8WZA2 1011 aa21.44■■□□□ 1.02
SKA3-204ENST00000462482 PRIM1P49642 420 aaKnown RBP21.42■■□□□ 1.02
SKA3-204ENST00000462482 CGNL1Q0VF96 1302 aa21.42■■□□□ 1.02
SKA3-204ENST00000462482 CASZ1Q86V15 1759 aa21.42■■□□□ 1.02
SKA3-204ENST00000462482 FHDC1Q9C0D6 1143 aaPredicted RBP21.42■■□□□ 1.02
SKA3-204ENST00000462482 ARXQ96QS3 562 aa21.41■■□□□ 1.02
SKA3-204ENST00000462482 LRRC4BQ9NT99 713 aa21.41■■□□□ 1.02
SKA3-204ENST00000462482 TATP17735 454 aaPredicted RBP21.4■■□□□ 1.02
SKA3-204ENST00000462482 ZNF827Q17R98 1081 aa21.4■■□□□ 1.02
SKA3-204ENST00000462482 SYT17Q9BSW7 474 aa21.4■■□□□ 1.02
SKA3-204ENST00000462482 TIMELESSQ9UNS1 1208 aa21.4■■□□□ 1.02
SKA3-204ENST00000462482 NBPF6Q5VWK0 638 aa21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms