RNA–Protein interactions for RNA: ENST00000460928.1

ATPAF1-203, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 869 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-203ENST00000460928 ZFAND3Q9H8U3 227 aa8.51□□□□□ -1.05
ATPAF1-203ENST00000460928 H3BM21 787 aa8.5□□□□□ -1.05
ATPAF1-203ENST00000460928 IRF7Q92985 503 aa8.5□□□□□ -1.05
ATPAF1-203ENST00000460928 FSHRP23945 695 aa8.49□□□□□ -1.05
ATPAF1-203ENST00000460928 PDXDC2PQ6P474 469 aa8.49□□□□□ -1.05
ATPAF1-203ENST00000460928 FAM117AQ9C073 453 aa8.49□□□□□ -1.05
ATPAF1-203ENST00000460928 GPBP1L1Q9HC44 474 aaPredicted RBP8.49□□□□□ -1.05
ATPAF1-203ENST00000460928 ZC3H4Q9UPT8 1303 aaKnown RBP8.49□□□□□ -1.05
ATPAF1-203ENST00000460928 ERFEQ4G0M1 354 aa8.48□□□□□ -1.05
ATPAF1-203ENST00000460928 VASH1Q7L8A9 365 aaPredicted RBP8.48□□□□□ -1.05
ATPAF1-203ENST00000460928 MEIOBQ8N635 442 aa8.48□□□□□ -1.05
ATPAF1-203ENST00000460928 FKBPLQ9UIM3 349 aa8.48□□□□□ -1.05
ATPAF1-203ENST00000460928 MAGEB6P1A0A0J9YX57 407 aa8.47□□□□□ -1.05
ATPAF1-203ENST00000460928 FBXO31Q5XUX0 539 aaPredicted RBP8.47□□□□□ -1.05
ATPAF1-203ENST00000460928 ERICH6Q7L0X2 663 aa8.47□□□□□ -1.05
ATPAF1-203ENST00000460928 EMILIN1Q9Y6C2 1016 aa8.47□□□□□ -1.05
ATPAF1-203ENST00000460928 BAZ1AQ9NRL2 1556 aaPredicted RBP8.47□□□□□ -1.05
ATPAF1-203ENST00000460928 FAM181BA6NEQ2 426 aa8.46□□□□□ -1.06
ATPAF1-203ENST00000460928 CCDC116Q8IYX3 515 aa8.46□□□□□ -1.06
ATPAF1-203ENST00000460928 LINC00528Q8N1L1 170 aa8.46□□□□□ -1.06
ATPAF1-203ENST00000460928 PROCA1Q8NCQ7 364 aaPredicted RBP8.46□□□□□ -1.06
ATPAF1-203ENST00000460928 LRRN4Q8WUT4 740 aa8.46□□□□□ -1.06
ATPAF1-203ENST00000460928 CDV3Q9UKY7 258 aaKnown RBP8.46□□□□□ -1.06
ATPAF1-203ENST00000460928 WIZO95785 1651 aa8.46□□□□□ -1.06
ATPAF1-203ENST00000460928 ATAD2BQ9ULI0 1458 aa8.45□□□□□ -1.06
ATPAF1-203ENST00000460928 UPP2O95045 317 aa8.45□□□□□ -1.06
ATPAF1-203ENST00000460928 GMPRP36959 345 aa8.45□□□□□ -1.06
ATPAF1-203ENST00000460928 CARD14Q9BXL6 1004 aa8.45□□□□□ -1.06
ATPAF1-203ENST00000460928 RSF1Q96T23 1441 aaPredicted RBP8.45□□□□□ -1.06
ATPAF1-203ENST00000460928 VSIG8P0DPA2 414 aa8.44□□□□□ -1.06
ATPAF1-203ENST00000460928 ARHGAP9Q9BRR9 750 aa8.44□□□□□ -1.06
ATPAF1-203ENST00000460928 GPSM3Q9Y4H4 160 aa8.44□□□□□ -1.06
ATPAF1-203ENST00000460928 VEGFBP49765 207 aa8.43□□□□□ -1.06
ATPAF1-203ENST00000460928 BRPF1P55201 1214 aaPredicted RBP8.43□□□□□ -1.06
ATPAF1-203ENST00000460928 NR6A1Q15406 480 aa8.43□□□□□ -1.06
ATPAF1-203ENST00000460928 C6orf118Q5T5N4 469 aa8.43□□□□□ -1.06
ATPAF1-203ENST00000460928 TSEN34Q9BSV6 310 aaKnown RBP8.43□□□□□ -1.06
ATPAF1-203ENST00000460928 ERBB4Q15303 1308 aa8.43□□□□□ -1.06
ATPAF1-203ENST00000460928 SOBPA7XYQ1 873 aa8.42□□□□□ -1.06
ATPAF1-203ENST00000460928 MAN1A2O60476 641 aa8.42□□□□□ -1.06
ATPAF1-203ENST00000460928 BMP2P12643 396 aa8.42□□□□□ -1.06
ATPAF1-203ENST00000460928 SLC10A4Q96EP9 437 aa8.42□□□□□ -1.06
ATPAF1-203ENST00000460928 SOS2Q07890 1332 aaPredicted RBP8.42□□□□□ -1.06
ATPAF1-203ENST00000460928 LORP23490 312 aaPredicted RBP8.41□□□□□ -1.06
ATPAF1-203ENST00000460928 OCSTAMPQ9BR26 566 aa8.41□□□□□ -1.06
ATPAF1-203ENST00000460928 GOPCQ9HD26 462 aa8.41□□□□□ -1.06
ATPAF1-203ENST00000460928 PGPEP1Q9NXJ5 209 aa8.41□□□□□ -1.06
ATPAF1-203ENST00000460928 SUPT5HO00267 1087 aaKnown RBP8.4□□□□□ -1.06
ATPAF1-203ENST00000460928 AP1G2O75843 785 aa8.4□□□□□ -1.06
ATPAF1-203ENST00000460928 PTK2Q05397 1052 aa8.4□□□□□ -1.06
ATPAF1-203ENST00000460928 PPP1R26Q5T8A7 1209 aaPredicted RBP8.4□□□□□ -1.06
ATPAF1-203ENST00000460928 Q6ZVU0 165 aa8.4□□□□□ -1.06
ATPAF1-203ENST00000460928 ZBTB33Q86T24 672 aa8.4□□□□□ -1.06
ATPAF1-203ENST00000460928 ZSCAN1Q8NBB4 408 aa8.4□□□□□ -1.06
ATPAF1-203ENST00000460928 KCTD15Q96SI1 283 aaPredicted RBP8.4□□□□□ -1.06
ATPAF1-203ENST00000460928 NCAPD3P42695 1498 aa8.39□□□□□ -1.07
ATPAF1-203ENST00000460928 DHX9Q08211 1270 aaKnown RBP8.39□□□□□ -1.07
ATPAF1-203ENST00000460928 PNMA1Q8ND90 353 aa8.39□□□□□ -1.07
ATPAF1-203ENST00000460928 USP17L8P0C7I0 530 aa8.38□□□□□ -1.07
ATPAF1-203ENST00000460928 NEUROD2Q15784 382 aa8.38□□□□□ -1.07
ATPAF1-203ENST00000460928 DNMT3LQ9UJW3 386 aa8.38□□□□□ -1.07
ATPAF1-203ENST00000460928 SMARCA2P51531 1590 aa8.38□□□□□ -1.07
ATPAF1-203ENST00000460928 BAZ1BQ9UIG0 1483 aaKnown RBP8.38□□□□□ -1.07
ATPAF1-203ENST00000460928 RFC5P40937 340 aa8.37□□□□□ -1.07
ATPAF1-203ENST00000460928 ADAM32Q8TC27 787 aa8.37□□□□□ -1.07
ATPAF1-203ENST00000460928 HMX1Q9NP08 348 aaPredicted RBP8.37□□□□□ -1.07
ATPAF1-203ENST00000460928 ATP1B4Q9UN42 357 aaPredicted RBP8.37□□□□□ -1.07
ATPAF1-203ENST00000460928 PEG3Q9GZU2 1588 aa8.36□□□□□ -1.07
ATPAF1-203ENST00000460928 SPINT1O43278 529 aa8.36□□□□□ -1.07
ATPAF1-203ENST00000460928 PPFIA3O75145 1194 aa8.36□□□□□ -1.07
ATPAF1-203ENST00000460928 NBPF20Q3BBV1 942 aa8.36□□□□□ -1.07
ATPAF1-203ENST00000460928 INTS6LQ5JSJ4 861 aaKnown RBP8.36□□□□□ -1.07
ATPAF1-203ENST00000460928 EPS8L1Q8TE68 723 aa8.36□□□□□ -1.07
ATPAF1-203ENST00000460928 TTLL8A6PVC2 850 aa8.35□□□□□ -1.07
ATPAF1-203ENST00000460928 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.35□□□□□ -1.07
ATPAF1-203ENST00000460928 CBLBQ13191 982 aa8.34□□□□□ -1.07
ATPAF1-203ENST00000460928 C14orf37Q86TY3 774 aa8.34□□□□□ -1.07
ATPAF1-203ENST00000460928 THOC2Q8NI27 1593 aaKnown RBP8.34□□□□□ -1.07
ATPAF1-203ENST00000460928 TMEM259Q4ZIN3 620 aa8.33□□□□□ -1.08
ATPAF1-203ENST00000460928 HMGXB3Q12766 1538 aa8.33□□□□□ -1.08
ATPAF1-203ENST00000460928 PCMTD1Q96MG8 357 aaPredicted RBP8.32□□□□□ -1.08
ATPAF1-203ENST00000460928 ESPNB1AK53 854 aa8.31□□□□□ -1.08
ATPAF1-203ENST00000460928 TRIM34Q9BYJ4 488 aa8.31□□□□□ -1.08
ATPAF1-203ENST00000460928 NESP48681 1621 aa8.3□□□□□ -1.08
ATPAF1-203ENST00000460928 PTSQ03393 145 aa8.3□□□□□ -1.08
ATPAF1-203ENST00000460928 TOP2AP11388 1531 aaKnown RBP8.29□□□□□ -1.08
ATPAF1-203ENST00000460928 DZIP3Q86Y13 1208 aaKnown RBP8.29□□□□□ -1.08
ATPAF1-203ENST00000460928 SEPT12Q8IYM1 358 aa8.29□□□□□ -1.08
ATPAF1-203ENST00000460928 NANOS1Q8WY41 292 aaKnown RBP8.29□□□□□ -1.08
ATPAF1-203ENST00000460928 ZNF784Q8NCA9 323 aaPredicted RBP8.28□□□□□ -1.08
ATPAF1-203ENST00000460928 FIGNL2A6NMB9 653 aa8.27□□□□□ -1.09
ATPAF1-203ENST00000460928 ERVH48-1M5A8F1 160 aa8.27□□□□□ -1.09
ATPAF1-203ENST00000460928 LILRA1O75019 489 aa8.27□□□□□ -1.09
ATPAF1-203ENST00000460928 ADH1AP07327 375 aa8.27□□□□□ -1.09
ATPAF1-203ENST00000460928 RELBQ01201 579 aa8.27□□□□□ -1.09
ATPAF1-203ENST00000460928 TRIM52Q96A61 297 aa8.27□□□□□ -1.09
ATPAF1-203ENST00000460928 AGBL1Q96MI9 1066 aa8.27□□□□□ -1.09
ATPAF1-203ENST00000460928 TMPRSS4Q9NRS4 437 aa8.27□□□□□ -1.09
ATPAF1-203ENST00000460928 RIMBP3CA6NJZ7 1639 aa8.26□□□□□ -1.09
ATPAF1-203ENST00000460928 RIMBP3BA6NNM3 1639 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms