RNA–Protein interactions for RNA: ENST00000460928.1

ATPAF1-203, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 869 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-203ENST00000460928 AEBP2Q6ZN18 517 aaPredicted RBP24.34■■□□□ 1.49
ATPAF1-203ENST00000460928 CHIC1Q5VXU3 224 aa23.29■■□□□ 1.32
ATPAF1-203ENST00000460928 SENP3Q9H4L4 574 aaPredicted RBP20.8■□□□□ 0.92
ATPAF1-203ENST00000460928 PHF23Q9BUL5 403 aaPredicted RBP20.5■□□□□ 0.87
ATPAF1-203ENST00000460928 FOXD1Q16676 465 aa19.35■□□□□ 0.69
ATPAF1-203ENST00000460928 PLPPR3Q6T4P5 718 aa18.67■□□□□ 0.58
ATPAF1-203ENST00000460928 MSH5O43196 834 aa18.19■□□□□ 0.5
ATPAF1-203ENST00000460928 PPP6R1Q9UPN7 881 aa18.15■□□□□ 0.5
ATPAF1-203ENST00000460928 ADRA2BP18089 450 aa18.08■□□□□ 0.48
ATPAF1-203ENST00000460928 PIAS4Q8N2W9 510 aaPredicted RBP18.08■□□□□ 0.48
ATPAF1-203ENST00000460928 POTEDQ86YR6 584 aa17.83■□□□□ 0.44
ATPAF1-203ENST00000460928 SCAF1Q9H7N4 1312 aaKnown RBP16.62■□□□□ 0.25
ATPAF1-203ENST00000460928 MAPK8IP2Q13387 824 aaPredicted RBP16.55■□□□□ 0.24
ATPAF1-203ENST00000460928 DMRT2Q9Y5R5 561 aa16.5■□□□□ 0.23
ATPAF1-203ENST00000460928 PPP4R3CPQ6ZMV5 832 aa16.36■□□□□ 0.21
ATPAF1-203ENST00000460928 CNKSR2Q8WXI2 1034 aa16.05■□□□□ 0.16
ATPAF1-203ENST00000460928 HOXD11P31277 338 aaPredicted RBP15.97■□□□□ 0.15
ATPAF1-203ENST00000460928 RNF216Q9NWF9 866 aaPredicted RBP15.88■□□□□ 0.13
ATPAF1-203ENST00000460928 NCBP3Q53F19 620 aaKnown RBP15.8■□□□□ 0.12
ATPAF1-203ENST00000460928 DCAF8L1A6NGE4 600 aa15.76■□□□□ 0.11
ATPAF1-203ENST00000460928 CACNB1Q02641 598 aaPredicted RBP15.62■□□□□ 0.09
ATPAF1-203ENST00000460928 NPM3O75607 178 aaKnown RBP15.54■□□□□ 0.08
ATPAF1-203ENST00000460928 RNF39Q9H2S5 420 aa15.49■□□□□ 0.07
ATPAF1-203ENST00000460928 DNAJC5BQ9UF47 199 aa15.47■□□□□ 0.07
ATPAF1-203ENST00000460928 KCNA4P22459 653 aa15.35■□□□□ 0.05
ATPAF1-203ENST00000460928 C1QBPQ07021 282 aaKnown RBP15.29■□□□□ 0.04
ATPAF1-203ENST00000460928 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.14■□□□□ 0.01
ATPAF1-203ENST00000460928 U3KPZ7 1027 aaPredicted RBP14.87□□□□□ -0.03
ATPAF1-203ENST00000460928 SLC4A2P04920 1241 aa14.81□□□□□ -0.04
ATPAF1-203ENST00000460928 SPINK5Q9NQ38 1064 aaPredicted RBP14.58□□□□□ -0.08
ATPAF1-203ENST00000460928 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.54□□□□□ -0.08
ATPAF1-203ENST00000460928 CAPN15O75808 1086 aa14.54□□□□□ -0.08
ATPAF1-203ENST00000460928 HNRNPUL2Q1KMD3 747 aaKnown RBP14.54□□□□□ -0.08
ATPAF1-203ENST00000460928 SLC4A1APQ9BWU0 796 aaKnown RBP14.53□□□□□ -0.08
ATPAF1-203ENST00000460928 APLP2Q06481 763 aa14.52□□□□□ -0.09
ATPAF1-203ENST00000460928 DSG3P32926 999 aa14.47□□□□□ -0.09
ATPAF1-203ENST00000460928 SAMD1Q6SPF0 538 aaPredicted RBP14.45□□□□□ -0.1
ATPAF1-203ENST00000460928 MYCNP04198 464 aaPredicted RBP14.4□□□□□ -0.1
ATPAF1-203ENST00000460928 ZNF219Q9P2Y4 722 aaPredicted RBP14.39□□□□□ -0.11
ATPAF1-203ENST00000460928 TRHP20396 242 aaPredicted RBP14.33□□□□□ -0.12
ATPAF1-203ENST00000460928 FOXD4L1Q9NU39 408 aa14.32□□□□□ -0.12
ATPAF1-203ENST00000460928 ABCB7O75027 752 aa14.19□□□□□ -0.14
ATPAF1-203ENST00000460928 ZBTB22O15209 634 aa14.12□□□□□ -0.15
ATPAF1-203ENST00000460928 POLA2Q14181 598 aa14□□□□□ -0.17
ATPAF1-203ENST00000460928 ATF5Q9Y2D1 282 aaPredicted RBP14□□□□□ -0.17
ATPAF1-203ENST00000460928 POTEHQ6S545 545 aa13.97□□□□□ -0.17
ATPAF1-203ENST00000460928 ATXN8OSP0DMR3 200 aa13.91□□□□□ -0.18
ATPAF1-203ENST00000460928 RBM42Q9BTD8 480 aaKnown RBP13.86□□□□□ -0.19
ATPAF1-203ENST00000460928 ZBTB12Q9Y330 459 aaPredicted RBP13.8□□□□□ -0.2
ATPAF1-203ENST00000460928 CSRNP3Q8WYN3 585 aa13.6□□□□□ -0.23
ATPAF1-203ENST00000460928 CHRDL2Q6WN34 429 aa13.55□□□□□ -0.24
ATPAF1-203ENST00000460928 OSCARQ8IYS5 282 aa13.55□□□□□ -0.24
ATPAF1-203ENST00000460928 AKT1S1Q96B36 256 aa13.54□□□□□ -0.24
ATPAF1-203ENST00000460928 FBLN2P98095 1184 aa13.48□□□□□ -0.25
ATPAF1-203ENST00000460928 EHMT2Q96KQ7 1210 aa13.43□□□□□ -0.26
ATPAF1-203ENST00000460928 MKRN4PQ13434 485 aaPredicted RBP13.39□□□□□ -0.27
ATPAF1-203ENST00000460928 SPDYE2BA6NHP3 402 aa13.38□□□□□ -0.27
ATPAF1-203ENST00000460928 SPDYE6P0CI01 402 aa13.38□□□□□ -0.27
ATPAF1-203ENST00000460928 SPDYE2Q495Y8 402 aa13.38□□□□□ -0.27
ATPAF1-203ENST00000460928 REM2Q8IYK8 340 aaPredicted RBP13.38□□□□□ -0.27
ATPAF1-203ENST00000460928 PITPNM1O00562 1244 aa13.23□□□□□ -0.29
ATPAF1-203ENST00000460928 SSUH2Q9Y2M2 353 aa13.22□□□□□ -0.29
ATPAF1-203ENST00000460928 PIP4P2Q8N4L2 257 aa13.19□□□□□ -0.3
ATPAF1-203ENST00000460928 ZNF692Q9BU19 519 aaPredicted RBP13.19□□□□□ -0.3
ATPAF1-203ENST00000460928 FXR2P51116 673 aaKnown RBP eCLIP13.12□□□□□ -0.31
ATPAF1-203ENST00000460928 SPDYE1Q8NFV5 336 aaPredicted RBP13.09□□□□□ -0.31
ATPAF1-203ENST00000460928 SP7Q8TDD2 431 aaPredicted RBP13.07□□□□□ -0.32
ATPAF1-203ENST00000460928 PABPN1Q86U42 306 aaKnown RBP eCLIP13□□□□□ -0.33
ATPAF1-203ENST00000460928 CLEC11AQ9Y240 323 aa12.99□□□□□ -0.33
ATPAF1-203ENST00000460928 HAX1O00165 279 aa12.97□□□□□ -0.33
ATPAF1-203ENST00000460928 PRKAR2AP13861 404 aaKnown RBP12.88□□□□□ -0.35
ATPAF1-203ENST00000460928 PRR29P0C7W0 189 aa12.84□□□□□ -0.35
ATPAF1-203ENST00000460928 SPDYE4A6NLX3 237 aa12.82□□□□□ -0.36
ATPAF1-203ENST00000460928 EVX2Q03828 476 aa12.78□□□□□ -0.36
ATPAF1-203ENST00000460928 CHADLQ6NUI6 762 aa12.73□□□□□ -0.37
ATPAF1-203ENST00000460928 STAG3Q9UJ98 1225 aa12.72□□□□□ -0.37
ATPAF1-203ENST00000460928 C19orf67A6NJJ6 358 aa12.71□□□□□ -0.37
ATPAF1-203ENST00000460928 PROM2Q8N271 834 aa12.61□□□□□ -0.39
ATPAF1-203ENST00000460928 FARP1Q9Y4F1 1045 aaPredicted RBP12.61□□□□□ -0.39
ATPAF1-203ENST00000460928 CREBZFQ9NS37 354 aa12.56□□□□□ -0.4
ATPAF1-203ENST00000460928 GABBR2O75899 941 aa12.52□□□□□ -0.41
ATPAF1-203ENST00000460928 CD44P16070 742 aaKnown RBP12.49□□□□□ -0.41
ATPAF1-203ENST00000460928 MNX1P50219 401 aaPredicted RBP12.39□□□□□ -0.43
ATPAF1-203ENST00000460928 CLCN6P51797 869 aa12.39□□□□□ -0.43
ATPAF1-203ENST00000460928 NPM1P06748 294 aaKnown RBP eCLIP12.35□□□□□ -0.43
ATPAF1-203ENST00000460928 ZNF579Q8NAF0 562 aaKnown RBP12.35□□□□□ -0.43
ATPAF1-203ENST00000460928 ZRANB1Q9UGI0 708 aa12.32□□□□□ -0.44
ATPAF1-203ENST00000460928 FKBP8Q14318 412 aa12.3□□□□□ -0.44
ATPAF1-203ENST00000460928 PAK3O75914 559 aaPredicted RBP12.27□□□□□ -0.45
ATPAF1-203ENST00000460928 LHX8Q68G74 356 aa12.25□□□□□ -0.45
ATPAF1-203ENST00000460928 POTEIP0CG38 1075 aa12.24□□□□□ -0.45
ATPAF1-203ENST00000460928 PLEKHG5O94827 1062 aa12.21□□□□□ -0.45
ATPAF1-203ENST00000460928 MIER1Q8N108 512 aa12.19□□□□□ -0.46
ATPAF1-203ENST00000460928 DCBLD2Q96PD2 775 aa12.18□□□□□ -0.46
ATPAF1-203ENST00000460928 PHF12Q96QT6 1004 aa12.15□□□□□ -0.46
ATPAF1-203ENST00000460928 GALR2O43603 387 aaPredicted RBP12.13□□□□□ -0.47
ATPAF1-203ENST00000460928 PLCD3Q8N3E9 789 aa12.12□□□□□ -0.47
ATPAF1-203ENST00000460928 ZBTB47Q9UFB7 747 aaPredicted RBP12.08□□□□□ -0.48
ATPAF1-203ENST00000460928 CCDC61Q9Y6R9 512 aa12.08□□□□□ -0.48
ATPAF1-203ENST00000460928 TSPYL2Q9H2G4 693 aaPredicted RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms