RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 ZRANB1Q9UGI0 708 aa22.55■■□□□ 1.2
COL7A1-203ENST00000459756 THRAP3Q9Y2W1 955 aaKnown RBP22.54■■□□□ 1.2
COL7A1-203ENST00000459756 CRB1P82279 1406 aa22.54■■□□□ 1.2
COL7A1-203ENST00000459756 ANKRD36BQ8N2N9 1353 aa22.53■■□□□ 1.2
COL7A1-203ENST00000459756 ABCC6O95255 1503 aa22.53■■□□□ 1.2
COL7A1-203ENST00000459756 AXIN2Q9Y2T1 843 aa22.52■■□□□ 1.2
COL7A1-203ENST00000459756 SF3B2Q13435 895 aaKnown RBP22.51■■□□□ 1.19
COL7A1-203ENST00000459756 OVOS2A0A0J9YW53 1432 aa22.5■■□□□ 1.19
COL7A1-203ENST00000459756 OVOS2Q6IE36 1432 aa22.5■■□□□ 1.19
COL7A1-203ENST00000459756 WDR17Q8IZU2 1322 aa22.5■■□□□ 1.19
COL7A1-203ENST00000459756 RGPD5Q99666 1765 aa22.49■■□□□ 1.19
COL7A1-203ENST00000459756 TOM1L2Q6ZVM7 507 aa22.49■■□□□ 1.19
COL7A1-203ENST00000459756 LTN1O94822 1766 aa22.47■■□□□ 1.19
COL7A1-203ENST00000459756 PDE3BQ13370 1112 aa22.46■■□□□ 1.19
COL7A1-203ENST00000459756 FAM182BQ5T319 152 aa22.46■■□□□ 1.19
COL7A1-203ENST00000459756 PARP4Q9UKK3 1724 aaKnown RBP22.45■■□□□ 1.19
COL7A1-203ENST00000459756 CSB-PGBD3P0DP91 1061 aa22.45■■□□□ 1.18
COL7A1-203ENST00000459756 EIF4G2P78344 907 aaKnown RBP eCLIP22.45■■□□□ 1.18
COL7A1-203ENST00000459756 COG3Q96JB2 828 aa22.45■■□□□ 1.18
COL7A1-203ENST00000459756 FAM196AQ6ZSG2 479 aa22.44■■□□□ 1.18
COL7A1-203ENST00000459756 RGPD1P0DJD0 1748 aa22.43■■□□□ 1.18
COL7A1-203ENST00000459756 CARD10Q9BWT7 1032 aa22.43■■□□□ 1.18
COL7A1-203ENST00000459756 MYOM1P52179 1685 aa22.42■■□□□ 1.18
COL7A1-203ENST00000459756 DEFB132Q7Z7B7 95 aa22.42■■□□□ 1.18
COL7A1-203ENST00000459756 CDCA7Q9BWT1 371 aaPredicted RBP22.42■■□□□ 1.18
COL7A1-203ENST00000459756 WNK3Q9BYP7 1800 aa22.41■■□□□ 1.18
COL7A1-203ENST00000459756 BAG6P46379 1132 aa22.4■■□□□ 1.18
COL7A1-203ENST00000459756 CCDC7Q96M83 1385 aa22.39■■□□□ 1.18
COL7A1-203ENST00000459756 ERBB3P21860 1342 aa22.39■■□□□ 1.18
COL7A1-203ENST00000459756 FYB1O15117 783 aa22.39■■□□□ 1.17
COL7A1-203ENST00000459756 HSPA5P11021 654 aaKnown RBP22.39■■□□□ 1.17
COL7A1-203ENST00000459756 LRRC37A3O60309 1634 aa22.39■■□□□ 1.17
COL7A1-203ENST00000459756 C11orf95C9JLR9 678 aaPredicted RBP22.38■■□□□ 1.17
COL7A1-203ENST00000459756 DDB1Q16531 1140 aa22.38■■□□□ 1.17
COL7A1-203ENST00000459756 TNS1Q9HBL0 1735 aaKnown RBP22.37■■□□□ 1.17
COL7A1-203ENST00000459756 KIF20BQ96Q89 1820 aa22.37■■□□□ 1.17
COL7A1-203ENST00000459756 IP6K1Q92551 441 aa22.37■■□□□ 1.17
COL7A1-203ENST00000459756 TRIM37O94972 964 aa22.36■■□□□ 1.17
COL7A1-203ENST00000459756 ANKRD24Q8TF21 1146 aa22.36■■□□□ 1.17
COL7A1-203ENST00000459756 GGNBP2Q9H3C7 697 aa22.36■■□□□ 1.17
COL7A1-203ENST00000459756 DISP2A7MBM2 1401 aa22.36■■□□□ 1.17
COL7A1-203ENST00000459756 CARD14Q9BXL6 1004 aa22.35■■□□□ 1.17
COL7A1-203ENST00000459756 NLRP2Q9NX02 1062 aa22.35■■□□□ 1.17
COL7A1-203ENST00000459756 MAP3K19Q56UN5 1328 aa22.34■■□□□ 1.17
COL7A1-203ENST00000459756 OVOS2A0A0G2JMS6 1433 aa22.34■■□□□ 1.17
COL7A1-203ENST00000459756 NSD3Q9BZ95 1437 aa22.34■■□□□ 1.17
COL7A1-203ENST00000459756 POLR3GLQ9BT43 218 aa22.33■■□□□ 1.17
COL7A1-203ENST00000459756 PEAK1Q9H792 1746 aa22.32■■□□□ 1.16
COL7A1-203ENST00000459756 AMPHP49418 695 aa22.32■■□□□ 1.16
COL7A1-203ENST00000459756 FAM208AQ9UK61 1670 aaKnown RBP22.31■■□□□ 1.16
COL7A1-203ENST00000459756 RTL1A6NKG5 1358 aa22.31■■□□□ 1.16
COL7A1-203ENST00000459756 HOXC9P31274 260 aa22.31■■□□□ 1.16
COL7A1-203ENST00000459756 EN1Q05925 392 aaPredicted RBP22.31■■□□□ 1.16
COL7A1-203ENST00000459756 EXOC5O00471 708 aa22.3■■□□□ 1.16
COL7A1-203ENST00000459756 FBLN1P23142 703 aa22.3■■□□□ 1.16
COL7A1-203ENST00000459756 APBA3O96018 575 aa22.29■■□□□ 1.16
COL7A1-203ENST00000459756 PARD3Q8TEW0 1356 aa22.28■■□□□ 1.16
COL7A1-203ENST00000459756 IL2RBP14784 551 aa22.28■■□□□ 1.16
COL7A1-203ENST00000459756 RRS1Q15050 365 aaKnown RBP22.28■■□□□ 1.16
COL7A1-203ENST00000459756 MARCH10Q8NA82 808 aaPredicted RBP22.28■■□□□ 1.16
COL7A1-203ENST00000459756 LTV1Q96GA3 475 aaPredicted RBP22.28■■□□□ 1.16
COL7A1-203ENST00000459756 BCL9O00512 1426 aa22.28■■□□□ 1.16
COL7A1-203ENST00000459756 TNS2Q63HR2 1409 aa22.28■■□□□ 1.16
COL7A1-203ENST00000459756 CGNL1Q0VF96 1302 aa22.28■■□□□ 1.16
COL7A1-203ENST00000459756 CAMKK2Q96RR4 588 aa22.26■■□□□ 1.15
COL7A1-203ENST00000459756 SBF2Q86WG5 1849 aa22.26■■□□□ 1.15
COL7A1-203ENST00000459756 KIF24Q5T7B8 1368 aa22.25■■□□□ 1.15
COL7A1-203ENST00000459756 SRCAPQ6ZRS2 3230 aa22.25■■□□□ 1.15
COL7A1-203ENST00000459756 EZH2Q15910 746 aaKnown RBP22.24■■□□□ 1.15
COL7A1-203ENST00000459756 FLT4P35916 1363 aa22.23■■□□□ 1.15
COL7A1-203ENST00000459756 BCL11BQ9C0K0 894 aaPredicted RBP22.22■■□□□ 1.15
COL7A1-203ENST00000459756 PANK3Q9H999 370 aa22.22■■□□□ 1.15
COL7A1-203ENST00000459756 SMG6Q86US8 1419 aaKnown RBP22.22■■□□□ 1.15
COL7A1-203ENST00000459756 INSRP06213 1382 aa22.21■■□□□ 1.15
COL7A1-203ENST00000459756 RGPD2P0DJD1 1756 aa22.2■■□□□ 1.14
COL7A1-203ENST00000459756 HSP90AB2PQ58FF8 381 aa22.19■■□□□ 1.14
COL7A1-203ENST00000459756 RREB1Q92766 1687 aa22.19■■□□□ 1.14
COL7A1-203ENST00000459756 ANKRD26Q9UPS8 1709 aa22.19■■□□□ 1.14
COL7A1-203ENST00000459756 RGPD3A6NKT7 1758 aaPredicted RBP22.17■■□□□ 1.14
COL7A1-203ENST00000459756 RGPD4Q7Z3J3 1758 aa22.17■■□□□ 1.14
COL7A1-203ENST00000459756 PLSCR1O15162 318 aa22.17■■□□□ 1.14
COL7A1-203ENST00000459756 EMILIN1Q9Y6C2 1016 aa22.17■■□□□ 1.14
COL7A1-203ENST00000459756 NBPF6Q5VWK0 638 aa22.16■■□□□ 1.14
COL7A1-203ENST00000459756 NBPF4Q96M43 638 aa22.16■■□□□ 1.14
COL7A1-203ENST00000459756 NSD2O96028 1365 aa22.15■■□□□ 1.14
COL7A1-203ENST00000459756 KIF7Q2M1P5 1343 aa22.15■■□□□ 1.14
COL7A1-203ENST00000459756 PTF1AQ7RTS3 328 aa22.15■■□□□ 1.14
COL7A1-203ENST00000459756 NUP188Q5SRE5 1749 aa22.14■■□□□ 1.14
COL7A1-203ENST00000459756 PSDA5PKW4 1024 aaPredicted RBP22.14■■□□□ 1.13
COL7A1-203ENST00000459756 PPM1GO15355 546 aaPredicted RBP22.14■■□□□ 1.13
COL7A1-203ENST00000459756 MAP2P11137 1827 aaKnown RBP22.14■■□□□ 1.13
COL7A1-203ENST00000459756 NHSQ6T4R5 1651 aa22.14■■□□□ 1.13
COL7A1-203ENST00000459756 WASHC2AQ641Q2 1341 aa22.13■■□□□ 1.13
COL7A1-203ENST00000459756 MEGF6O75095 1541 aa22.12■■□□□ 1.13
COL7A1-203ENST00000459756 R3HDM1Q15032 1099 aaKnown RBP22.12■■□□□ 1.13
COL7A1-203ENST00000459756 NBPF14Q5TI25 921 aa22.11■■□□□ 1.13
COL7A1-203ENST00000459756 USHBP1Q8N6Y0 703 aa22.11■■□□□ 1.13
COL7A1-203ENST00000459756 ZCRB1Q8TBF4 217 aaKnown RBP22.11■■□□□ 1.13
COL7A1-203ENST00000459756 DDX54Q8TDD1 881 aaKnown RBP22.11■■□□□ 1.13
COL7A1-203ENST00000459756 RAPGEF4Q8WZA2 1011 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms