RNA–Protein interactions for RNA: ENST00000458516.5

TRIM39-211, Transcript of tripartite motif containing 39, humanhuman

TSL 2

Gene TRIM39, Length 1,003 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-211ENST00000458516 ANP32CO43423 234 aa22.82■■□□□ 1.24
TRIM39-211ENST00000458516 CHRNA2Q15822 529 aa22.82■■□□□ 1.24
TRIM39-211ENST00000458516 CAMTA1Q9Y6Y1 1673 aa22.81■■□□□ 1.24
TRIM39-211ENST00000458516 MYBBP1AQ9BQG0 1328 aaKnown RBP22.81■■□□□ 1.24
TRIM39-211ENST00000458516 FLT4P35916 1363 aa22.8■■□□□ 1.24
TRIM39-211ENST00000458516 SLIT2O94813 1529 aa22.8■■□□□ 1.24
TRIM39-211ENST00000458516 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.79■■□□□ 1.24
TRIM39-211ENST00000458516 HOXC9P31274 260 aa22.79■■□□□ 1.24
TRIM39-211ENST00000458516 AMPHP49418 695 aa22.79■■□□□ 1.24
TRIM39-211ENST00000458516 MTHFSP49914 203 aa22.78■■□□□ 1.24
TRIM39-211ENST00000458516 BLMP54132 1417 aaPredicted RBP22.78■■□□□ 1.24
TRIM39-211ENST00000458516 MEX3CQ5U5Q3 659 aaKnown RBP22.78■■□□□ 1.24
TRIM39-211ENST00000458516 IP6K1Q92551 441 aa22.78■■□□□ 1.24
TRIM39-211ENST00000458516 C8orf37Q96NL8 207 aa22.77■■□□□ 1.24
TRIM39-211ENST00000458516 AXIN2Q9Y2T1 843 aa22.77■■□□□ 1.24
TRIM39-211ENST00000458516 COL3A1P02461 1466 aaPredicted RBP22.77■■□□□ 1.24
TRIM39-211ENST00000458516 RGPD2P0DJD1 1756 aa22.76■■□□□ 1.23
TRIM39-211ENST00000458516 PPM1GO15355 546 aaPredicted RBP22.76■■□□□ 1.23
TRIM39-211ENST00000458516 COL5A2P05997 1499 aaPredicted RBP22.76■■□□□ 1.23
TRIM39-211ENST00000458516 FAM208AQ9UK61 1670 aaKnown RBP22.76■■□□□ 1.23
TRIM39-211ENST00000458516 INSRP06213 1382 aa22.76■■□□□ 1.23
TRIM39-211ENST00000458516 HSP90AB2PQ58FF8 381 aa22.74■■□□□ 1.23
TRIM39-211ENST00000458516 FNBP4Q8N3X1 1017 aaPredicted RBP22.73■■□□□ 1.23
TRIM39-211ENST00000458516 NGLY1Q96IV0 654 aa22.73■■□□□ 1.23
TRIM39-211ENST00000458516 BTG4Q9NY30 223 aa22.73■■□□□ 1.23
TRIM39-211ENST00000458516 BCL9LQ86UU0 1499 aa22.73■■□□□ 1.23
TRIM39-211ENST00000458516 SOCS7O14512 581 aa22.72■■□□□ 1.23
TRIM39-211ENST00000458516 ERBB3P21860 1342 aa22.71■■□□□ 1.23
TRIM39-211ENST00000458516 AFF2P51816 1311 aa22.71■■□□□ 1.23
TRIM39-211ENST00000458516 RGPD1P0DJD0 1748 aa22.71■■□□□ 1.23
TRIM39-211ENST00000458516 ANKRD24Q8TF21 1146 aa22.69■■□□□ 1.22
TRIM39-211ENST00000458516 EIF4A2Q14240 407 aaKnown RBP22.67■■□□□ 1.22
TRIM39-211ENST00000458516 UNC5CLQ8IV45 518 aa22.67■■□□□ 1.22
TRIM39-211ENST00000458516 LTV1Q96GA3 475 aaPredicted RBP22.67■■□□□ 1.22
TRIM39-211ENST00000458516 CFAP53Q96M91 514 aa22.67■■□□□ 1.22
TRIM39-211ENST00000458516 WNK3Q9BYP7 1800 aa22.66■■□□□ 1.22
TRIM39-211ENST00000458516 WDR17Q8IZU2 1322 aa22.66■■□□□ 1.22
TRIM39-211ENST00000458516 STRN4Q9NRL3 753 aa22.66■■□□□ 1.22
TRIM39-211ENST00000458516 USP21Q9UK80 565 aa22.66■■□□□ 1.22
TRIM39-211ENST00000458516 IL13P35225 146 aa22.64■■□□□ 1.21
TRIM39-211ENST00000458516 EVA1CP58658 441 aa22.64■■□□□ 1.21
TRIM39-211ENST00000458516 CCDC184Q52MB2 194 aa22.64■■□□□ 1.21
TRIM39-211ENST00000458516 LARP1Q6PKG0 1096 aaKnown RBP22.64■■□□□ 1.21
TRIM39-211ENST00000458516 MIER1Q8N108 512 aa22.64■■□□□ 1.21
TRIM39-211ENST00000458516 ATRNO75882 1429 aa22.64■■□□□ 1.21
TRIM39-211ENST00000458516 CRB1P82279 1406 aa22.64■■□□□ 1.21
TRIM39-211ENST00000458516 DIAPH1O60610 1272 aaKnown RBP22.63■■□□□ 1.21
TRIM39-211ENST00000458516 NCAPD2Q15021 1401 aa22.63■■□□□ 1.21
TRIM39-211ENST00000458516 CSB-PGBD3P0DP91 1061 aa22.62■■□□□ 1.21
TRIM39-211ENST00000458516 GLI3P10071 1580 aa22.61■■□□□ 1.21
TRIM39-211ENST00000458516 VPS72Q15906 364 aa22.6■■□□□ 1.21
TRIM39-211ENST00000458516 IGSF1Q8N6C5 1336 aa22.59■■□□□ 1.21
TRIM39-211ENST00000458516 NBPF6Q5VWK0 638 aa22.59■■□□□ 1.21
TRIM39-211ENST00000458516 TOM1L2Q6ZVM7 507 aa22.59■■□□□ 1.21
TRIM39-211ENST00000458516 ILDR2Q71H61 639 aa22.59■■□□□ 1.21
TRIM39-211ENST00000458516 NBPF4Q96M43 638 aa22.59■■□□□ 1.21
TRIM39-211ENST00000458516 EYA1Q99502 592 aa22.59■■□□□ 1.21
TRIM39-211ENST00000458516 RGS17Q9UGC6 210 aaPredicted RBP22.59■■□□□ 1.21
TRIM39-211ENST00000458516 SPATA31A5Q5VU36 1347 aa22.58■■□□□ 1.21
TRIM39-211ENST00000458516 SPATA31A7Q8IWB4 1347 aa22.58■■□□□ 1.21
TRIM39-211ENST00000458516 ZNF772Q68DY9 489 aaPredicted RBP22.58■■□□□ 1.21
TRIM39-211ENST00000458516 NLRP2Q9NX02 1062 aa22.58■■□□□ 1.21
TRIM39-211ENST00000458516 SPATA31A1Q5TZJ5 1347 aa22.57■■□□□ 1.2
TRIM39-211ENST00000458516 CCER2I3L3R5 266 aa22.57■■□□□ 1.2
TRIM39-211ENST00000458516 CARD10Q9BWT7 1032 aa22.57■■□□□ 1.2
TRIM39-211ENST00000458516 MRS2Q9HD23 443 aa22.57■■□□□ 1.2
TRIM39-211ENST00000458516 TRPC5Q9UL62 973 aaPredicted RBP22.57■■□□□ 1.2
TRIM39-211ENST00000458516 USHBP1Q8N6Y0 703 aa22.56■■□□□ 1.2
TRIM39-211ENST00000458516 PHF23Q9BUL5 403 aaPredicted RBP22.56■■□□□ 1.2
TRIM39-211ENST00000458516 PARP4Q9UKK3 1724 aaKnown RBP22.56■■□□□ 1.2
TRIM39-211ENST00000458516 NUDCQ9Y266 331 aa22.55■■□□□ 1.2
TRIM39-211ENST00000458516 U2SURPO15042 1029 aaKnown RBP22.54■■□□□ 1.2
TRIM39-211ENST00000458516 QTRT2Q9H974 415 aaKnown RBP22.54■■□□□ 1.2
TRIM39-211ENST00000458516 CCDC9Q9Y3X0 531 aaKnown RBP22.54■■□□□ 1.2
TRIM39-211ENST00000458516 KDRP35968 1356 aa22.53■■□□□ 1.2
TRIM39-211ENST00000458516 USP35Q9P2H5 1018 aa22.53■■□□□ 1.2
TRIM39-211ENST00000458516 THSD7AQ9UPZ6 1657 aa22.52■■□□□ 1.2
TRIM39-211ENST00000458516 DISP2A7MBM2 1401 aa22.52■■□□□ 1.2
TRIM39-211ENST00000458516 AEBP1Q8IUX7 1158 aa22.52■■□□□ 1.2
TRIM39-211ENST00000458516 TCP11L2Q8N4U5 519 aa22.52■■□□□ 1.2
TRIM39-211ENST00000458516 GJD4Q96KN9 370 aaPredicted RBP22.52■■□□□ 1.2
TRIM39-211ENST00000458516 MEGF6O75095 1541 aa22.52■■□□□ 1.19
TRIM39-211ENST00000458516 PKD1L3Q7Z443 1732 aa22.51■■□□□ 1.19
TRIM39-211ENST00000458516 U2AF1L5P0DN76 240 aaPredicted RBP22.5■■□□□ 1.19
TRIM39-211ENST00000458516 U2AF1Q01081 240 aaKnown RBP eCLIP22.5■■□□□ 1.19
TRIM39-211ENST00000458516 SULT6B1Q6IMI4 303 aa22.5■■□□□ 1.19
TRIM39-211ENST00000458516 THRAP3Q9Y2W1 955 aaKnown RBP22.5■■□□□ 1.19
TRIM39-211ENST00000458516 LRRC37A3O60309 1634 aa22.49■■□□□ 1.19
TRIM39-211ENST00000458516 SHANK3Q9BYB0 1731 aa22.49■■□□□ 1.19
TRIM39-211ENST00000458516 HMOX1P09601 288 aa22.49■■□□□ 1.19
TRIM39-211ENST00000458516 POTEAQ6S8J7 498 aa22.49■■□□□ 1.19
TRIM39-211ENST00000458516 PNISRQ8TF01 805 aaKnown RBP22.49■■□□□ 1.19
TRIM39-211ENST00000458516 WDR43Q15061 677 aaKnown RBP eCLIP22.48■■□□□ 1.19
TRIM39-211ENST00000458516 BARGINQ6ZT62 677 aa22.48■■□□□ 1.19
TRIM39-211ENST00000458516 RSPH6AQ9H0K4 717 aa22.47■■□□□ 1.19
TRIM39-211ENST00000458516 OVOS2A0A0G2JMS6 1433 aa22.46■■□□□ 1.19
TRIM39-211ENST00000458516 BRWD3Q6RI45 1802 aa22.45■■□□□ 1.19
TRIM39-211ENST00000458516 IL2RBP14784 551 aa22.45■■□□□ 1.18
TRIM39-211ENST00000458516 RBM6P78332 1123 aaKnown RBP22.45■■□□□ 1.18
TRIM39-211ENST00000458516 FAM98CQ17RN3 349 aaKnown RBP22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms