RNA–Protein interactions for RNA: ENST00000458038.5

CPNE1-220, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-220ENST00000458038 DDB1Q16531 1140 aa30.71■■■□□ 2.51
CPNE1-220ENST00000458038 CPSF1Q10570 1443 aaKnown RBP30.7■■■□□ 2.5
CPNE1-220ENST00000458038 SBNO2Q9Y2G9 1366 aa30.69■■■□□ 2.5
CPNE1-220ENST00000458038 AXIN2Q9Y2T1 843 aa30.68■■■□□ 2.5
CPNE1-220ENST00000458038 KTN1Q86UP2 1357 aaKnown RBP30.67■■■□□ 2.5
CPNE1-220ENST00000458038 NUP188Q5SRE5 1749 aa30.67■■■□□ 2.5
CPNE1-220ENST00000458038 PEAK1Q9H792 1746 aa30.66■■■□□ 2.5
CPNE1-220ENST00000458038 SBF2Q86WG5 1849 aa30.65■■■□□ 2.5
CPNE1-220ENST00000458038 PLSCR1O15162 318 aa30.64■■■□□ 2.5
CPNE1-220ENST00000458038 CARD10Q9BWT7 1032 aa30.64■■■□□ 2.5
CPNE1-220ENST00000458038 LRRC37A3O60309 1634 aa30.64■■■□□ 2.5
CPNE1-220ENST00000458038 RGPD3A6NKT7 1758 aaPredicted RBP30.62■■■□□ 2.49
CPNE1-220ENST00000458038 RGPD4Q7Z3J3 1758 aa30.62■■■□□ 2.49
CPNE1-220ENST00000458038 RGPD5Q99666 1765 aa30.62■■■□□ 2.49
CPNE1-220ENST00000458038 ABCC6O95255 1503 aa30.62■■■□□ 2.49
CPNE1-220ENST00000458038 WNK3Q9BYP7 1800 aa30.61■■■□□ 2.49
CPNE1-220ENST00000458038 CSB-PGBD3P0DP91 1061 aa30.61■■■□□ 2.49
CPNE1-220ENST00000458038 BCL11BQ9C0K0 894 aaPredicted RBP30.61■■■□□ 2.49
CPNE1-220ENST00000458038 BCL9O00512 1426 aa30.61■■■□□ 2.49
CPNE1-220ENST00000458038 CARD11Q9BXL7 1154 aa30.6■■■□□ 2.49
CPNE1-220ENST00000458038 MON2Q7Z3U7 1717 aa30.59■■■□□ 2.49
CPNE1-220ENST00000458038 NFAT5O94916 1531 aa30.58■■■□□ 2.49
CPNE1-220ENST00000458038 SOX12O15370 315 aa30.58■■■□□ 2.49
CPNE1-220ENST00000458038 USP31Q70CQ4 1352 aa30.57■■■□□ 2.48
CPNE1-220ENST00000458038 CCDC7Q96M83 1385 aa30.57■■■□□ 2.48
CPNE1-220ENST00000458038 MARCH10Q8NA82 808 aaPredicted RBP30.56■■■□□ 2.48
CPNE1-220ENST00000458038 EXOC5O00471 708 aa30.55■■■□□ 2.48
CPNE1-220ENST00000458038 PUS7Q96PZ0 661 aaKnown RBP30.55■■■□□ 2.48
CPNE1-220ENST00000458038 HDGFL2Q7Z4V5 671 aaPredicted RBP30.54■■■□□ 2.48
CPNE1-220ENST00000458038 SPON1Q9HCB6 807 aa30.54■■■□□ 2.48
CPNE1-220ENST00000458038 USP54Q70EL1 1684 aa30.54■■■□□ 2.48
CPNE1-220ENST00000458038 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.53■■■□□ 2.48
CPNE1-220ENST00000458038 TONSLQ96HA7 1378 aa30.51■■■□□ 2.47
CPNE1-220ENST00000458038 TMC1Q8TDI8 760 aa30.5■■■□□ 2.47
CPNE1-220ENST00000458038 TERF2IPQ9NYB0 399 aa30.5■■■□□ 2.47
CPNE1-220ENST00000458038 KCNQ2O43526 872 aa30.49■■■□□ 2.47
CPNE1-220ENST00000458038 CD163L1Q9NR16 1453 aa30.49■■■□□ 2.47
CPNE1-220ENST00000458038 SLC24A1O60721 1099 aa30.48■■■□□ 2.47
CPNE1-220ENST00000458038 EDC4Q6P2E9 1401 aaKnown RBP30.47■■■□□ 2.47
CPNE1-220ENST00000458038 NME9Q86XW9 330 aa30.46■■■□□ 2.47
CPNE1-220ENST00000458038 SLC12A5Q9H2X9 1139 aa30.46■■■□□ 2.47
CPNE1-220ENST00000458038 PPP1R1BQ9UD71 204 aaPredicted RBP30.46■■■□□ 2.47
CPNE1-220ENST00000458038 ERBB3P21860 1342 aa30.46■■■□□ 2.47
CPNE1-220ENST00000458038 PTF1AQ7RTS3 328 aa30.44■■■□□ 2.46
CPNE1-220ENST00000458038 TNS2Q63HR2 1409 aa30.44■■■□□ 2.46
CPNE1-220ENST00000458038 LTN1O94822 1766 aa30.43■■■□□ 2.46
CPNE1-220ENST00000458038 PROM2Q8N271 834 aa30.43■■■□□ 2.46
CPNE1-220ENST00000458038 NLRP2Q9NX02 1062 aa30.43■■■□□ 2.46
CPNE1-220ENST00000458038 NINLQ9Y2I6 1382 aa30.41■■■□□ 2.46
CPNE1-220ENST00000458038 IL2RBP14784 551 aa30.39■■■□□ 2.46
CPNE1-220ENST00000458038 TXNRD1Q16881 649 aa30.39■■■□□ 2.46
CPNE1-220ENST00000458038 ANO8Q9HCE9 1232 aaPredicted RBP30.39■■■□□ 2.46
CPNE1-220ENST00000458038 ANKRD24Q8TF21 1146 aa30.38■■■□□ 2.45
CPNE1-220ENST00000458038 A0A1W2PP64 1363 aa30.38■■■□□ 2.45
CPNE1-220ENST00000458038 KAT6BQ8WYB5 2073 aa30.37■■■□□ 2.45
CPNE1-220ENST00000458038 DCAF8L1A6NGE4 600 aa30.37■■■□□ 2.45
CPNE1-220ENST00000458038 STK32BQ9NY57 414 aa30.36■■■□□ 2.45
CPNE1-220ENST00000458038 CASZ1Q86V15 1759 aa30.35■■■□□ 2.45
CPNE1-220ENST00000458038 NHSQ6T4R5 1651 aa30.33■■■□□ 2.45
CPNE1-220ENST00000458038 IP6K1Q92551 441 aa30.33■■■□□ 2.45
CPNE1-220ENST00000458038 TESK2Q96S53 571 aa30.33■■■□□ 2.45
CPNE1-220ENST00000458038 ST20-MTHFSA0A0A6YYL1 179 aa30.31■■■□□ 2.44
CPNE1-220ENST00000458038 SLC15A2Q16348 729 aa30.31■■■□□ 2.44
CPNE1-220ENST00000458038 COG3Q96JB2 828 aa30.29■■■□□ 2.44
CPNE1-220ENST00000458038 FAM208AQ9UK61 1670 aaKnown RBP30.29■■■□□ 2.44
CPNE1-220ENST00000458038 ACSBG1Q96GR2 724 aa30.27■■■□□ 2.44
CPNE1-220ENST00000458038 PDGFDQ9GZP0 370 aaPredicted RBP30.25■■■□□ 2.43
CPNE1-220ENST00000458038 ZBTB7AO95365 584 aa30.24■■■□□ 2.43
CPNE1-220ENST00000458038 YY1P25490 414 aa30.24■■■□□ 2.43
CPNE1-220ENST00000458038 BTAF1O14981 1849 aa30.22■■■□□ 2.43
CPNE1-220ENST00000458038 MTFR1LQ9H019 292 aa30.22■■■□□ 2.43
CPNE1-220ENST00000458038 ANKRD36BQ8N2N9 1353 aa30.21■■■□□ 2.43
CPNE1-220ENST00000458038 PTGER2P43116 358 aa30.21■■■□□ 2.43
CPNE1-220ENST00000458038 AMPHP49418 695 aa30.2■■■□□ 2.43
CPNE1-220ENST00000458038 ATF5Q9Y2D1 282 aaPredicted RBP30.2■■■□□ 2.43
CPNE1-220ENST00000458038 MAP3K19Q56UN5 1328 aa30.2■■■□□ 2.42
CPNE1-220ENST00000458038 HOXC9P31274 260 aa30.19■■■□□ 2.42
CPNE1-220ENST00000458038 LTV1Q96GA3 475 aaPredicted RBP30.19■■■□□ 2.42
CPNE1-220ENST00000458038 TMF1P82094 1093 aa30.18■■■□□ 2.42
CPNE1-220ENST00000458038 DDX54Q8TDD1 881 aaKnown RBP30.17■■■□□ 2.42
CPNE1-220ENST00000458038 CDCA8Q53HL2 280 aa30.15■■■□□ 2.42
CPNE1-220ENST00000458038 SLC27A3Q5K4L6 730 aa30.15■■■□□ 2.42
CPNE1-220ENST00000458038 RTL1A6NKG5 1358 aa30.15■■■□□ 2.42
CPNE1-220ENST00000458038 PAPPAQ13219 1627 aa30.14■■■□□ 2.42
CPNE1-220ENST00000458038 MYOM1P52179 1685 aa30.14■■■□□ 2.41
CPNE1-220ENST00000458038 TRIM26Q12899 539 aaPredicted RBP30.13■■■□□ 2.41
CPNE1-220ENST00000458038 ZCRB1Q8TBF4 217 aaKnown RBP30.12■■■□□ 2.41
CPNE1-220ENST00000458038 FYB1O15117 783 aa30.11■■■□□ 2.41
CPNE1-220ENST00000458038 SGIP1Q9BQI5 828 aa30.11■■■□□ 2.41
CPNE1-220ENST00000458038 USP47Q96K76 1375 aa30.11■■■□□ 2.41
CPNE1-220ENST00000458038 LRRC4BQ9NT99 713 aa30.1■■■□□ 2.41
CPNE1-220ENST00000458038 CGNL1Q0VF96 1302 aa30.1■■■□□ 2.41
CPNE1-220ENST00000458038 SYT17Q9BSW7 474 aa30.09■■■□□ 2.41
CPNE1-220ENST00000458038 SLC16A10Q8TF71 515 aa30.08■■■□□ 2.41
CPNE1-220ENST00000458038 FHDC1Q9C0D6 1143 aaPredicted RBP30.08■■■□□ 2.41
CPNE1-220ENST00000458038 FBLN1P23142 703 aa30.07■■■□□ 2.4
CPNE1-220ENST00000458038 RGPD2P0DJD1 1756 aa30.07■■■□□ 2.4
CPNE1-220ENST00000458038 PRIM1P49642 420 aaKnown RBP30.06■■■□□ 2.4
CPNE1-220ENST00000458038 ZNF827Q17R98 1081 aa30.06■■■□□ 2.4
CPNE1-220ENST00000458038 ARXQ96QS3 562 aa30.06■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms