RNA–Protein interactions for RNA: ENST00000455548.2

SMPD4-214, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 547 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-214ENST00000455548 LARP1Q6PKG0 1096 aaKnown RBP22.55■■□□□ 1.2
SMPD4-214ENST00000455548 LTN1O94822 1766 aa22.55■■□□□ 1.2
SMPD4-214ENST00000455548 RGPD5Q99666 1765 aa22.55■■□□□ 1.2
SMPD4-214ENST00000455548 POLR3GLQ9BT43 218 aa22.54■■□□□ 1.2
SMPD4-214ENST00000455548 THSD7AQ9UPZ6 1657 aa22.54■■□□□ 1.2
SMPD4-214ENST00000455548 EP400Q96L91 3159 aa22.54■■□□□ 1.2
SMPD4-214ENST00000455548 KIF20BQ96Q89 1820 aa22.53■■□□□ 1.2
SMPD4-214ENST00000455548 CRB1P82279 1406 aa22.52■■□□□ 1.2
SMPD4-214ENST00000455548 AXIN2Q9Y2T1 843 aa22.52■■□□□ 1.2
SMPD4-214ENST00000455548 THRAP3Q9Y2W1 955 aaKnown RBP22.52■■□□□ 1.2
SMPD4-214ENST00000455548 BARGINQ6ZT62 677 aa22.51■■□□□ 1.19
SMPD4-214ENST00000455548 KRT27Q7Z3Y8 459 aa22.51■■□□□ 1.19
SMPD4-214ENST00000455548 TCP11L2Q8N4U5 519 aa22.51■■□□□ 1.19
SMPD4-214ENST00000455548 USP35Q9P2H5 1018 aa22.51■■□□□ 1.19
SMPD4-214ENST00000455548 WDR17Q8IZU2 1322 aa22.51■■□□□ 1.19
SMPD4-214ENST00000455548 FYB1O15117 783 aa22.5■■□□□ 1.19
SMPD4-214ENST00000455548 NSD3Q9BZ95 1437 aa22.49■■□□□ 1.19
SMPD4-214ENST00000455548 CARD14Q9BXL6 1004 aa22.49■■□□□ 1.19
SMPD4-214ENST00000455548 TOM1L2Q6ZVM7 507 aa22.48■■□□□ 1.19
SMPD4-214ENST00000455548 GGNBP2Q9H3C7 697 aa22.47■■□□□ 1.19
SMPD4-214ENST00000455548 CSB-PGBD3P0DP91 1061 aa22.46■■□□□ 1.19
SMPD4-214ENST00000455548 CCDC125Q86Z20 511 aa22.46■■□□□ 1.19
SMPD4-214ENST00000455548 CGNL1Q0VF96 1302 aa22.45■■□□□ 1.18
SMPD4-214ENST00000455548 BLMP54132 1417 aaPredicted RBP22.44■■□□□ 1.18
SMPD4-214ENST00000455548 CARD10Q9BWT7 1032 aa22.44■■□□□ 1.18
SMPD4-214ENST00000455548 PARP4Q9UKK3 1724 aaKnown RBP22.43■■□□□ 1.18
SMPD4-214ENST00000455548 C11orf95C9JLR9 678 aaPredicted RBP22.43■■□□□ 1.18
SMPD4-214ENST00000455548 IP6K1Q92551 441 aa22.43■■□□□ 1.18
SMPD4-214ENST00000455548 ERBB3P21860 1342 aa22.42■■□□□ 1.18
SMPD4-214ENST00000455548 MAP3K19Q56UN5 1328 aa22.42■■□□□ 1.18
SMPD4-214ENST00000455548 WNK3Q9BYP7 1800 aa22.42■■□□□ 1.18
SMPD4-214ENST00000455548 CCDC7Q96M83 1385 aa22.41■■□□□ 1.18
SMPD4-214ENST00000455548 RTL1A6NKG5 1358 aa22.4■■□□□ 1.18
SMPD4-214ENST00000455548 AMPHP49418 695 aa22.4■■□□□ 1.18
SMPD4-214ENST00000455548 PDE3BQ13370 1112 aa22.4■■□□□ 1.18
SMPD4-214ENST00000455548 ANKRD24Q8TF21 1146 aa22.4■■□□□ 1.18
SMPD4-214ENST00000455548 CDCA7Q9BWT1 371 aaPredicted RBP22.4■■□□□ 1.18
SMPD4-214ENST00000455548 PANK3Q9H999 370 aa22.4■■□□□ 1.18
SMPD4-214ENST00000455548 FAM208AQ9UK61 1670 aaKnown RBP22.39■■□□□ 1.18
SMPD4-214ENST00000455548 KIF7Q2M1P5 1343 aa22.38■■□□□ 1.17
SMPD4-214ENST00000455548 ANKRD26Q9UPS8 1709 aa22.38■■□□□ 1.17
SMPD4-214ENST00000455548 FBLN1P23142 703 aa22.37■■□□□ 1.17
SMPD4-214ENST00000455548 HOXC9P31274 260 aa22.37■■□□□ 1.17
SMPD4-214ENST00000455548 SF3B2Q13435 895 aaKnown RBP22.37■■□□□ 1.17
SMPD4-214ENST00000455548 NLRP2Q9NX02 1062 aa22.37■■□□□ 1.17
SMPD4-214ENST00000455548 RRS1Q15050 365 aaKnown RBP22.36■■□□□ 1.17
SMPD4-214ENST00000455548 LRRC37A3O60309 1634 aa22.35■■□□□ 1.17
SMPD4-214ENST00000455548 FAM182BQ5T319 152 aa22.35■■□□□ 1.17
SMPD4-214ENST00000455548 FAM196AQ6ZSG2 479 aa22.35■■□□□ 1.17
SMPD4-214ENST00000455548 KIF24Q5T7B8 1368 aa22.35■■□□□ 1.17
SMPD4-214ENST00000455548 RGPD1P0DJD0 1748 aa22.34■■□□□ 1.17
SMPD4-214ENST00000455548 DISP2A7MBM2 1401 aa22.34■■□□□ 1.17
SMPD4-214ENST00000455548 DDB1Q16531 1140 aa22.34■■□□□ 1.17
SMPD4-214ENST00000455548 NSD2O96028 1365 aa22.34■■□□□ 1.17
SMPD4-214ENST00000455548 LTV1Q96GA3 475 aaPredicted RBP22.32■■□□□ 1.16
SMPD4-214ENST00000455548 KNSTRNQ9Y448 316 aa22.32■■□□□ 1.16
SMPD4-214ENST00000455548 FLT4P35916 1363 aa22.32■■□□□ 1.16
SMPD4-214ENST00000455548 MAP2P11137 1827 aaKnown RBP22.31■■□□□ 1.16
SMPD4-214ENST00000455548 SMG6Q86US8 1419 aaKnown RBP22.31■■□□□ 1.16
SMPD4-214ENST00000455548 INSRP06213 1382 aa22.3■■□□□ 1.16
SMPD4-214ENST00000455548 PEAK1Q9H792 1746 aa22.3■■□□□ 1.16
SMPD4-214ENST00000455548 EXOC5O00471 708 aa22.29■■□□□ 1.16
SMPD4-214ENST00000455548 OVOS2A0A0G2JMS6 1433 aa22.29■■□□□ 1.16
SMPD4-214ENST00000455548 IL2RBP14784 551 aa22.28■■□□□ 1.16
SMPD4-214ENST00000455548 EMILIN1Q9Y6C2 1016 aa22.28■■□□□ 1.16
SMPD4-214ENST00000455548 TNS2Q63HR2 1409 aa22.28■■□□□ 1.16
SMPD4-214ENST00000455548 TNS1Q9HBL0 1735 aaKnown RBP22.28■■□□□ 1.16
SMPD4-214ENST00000455548 RGPD2P0DJD1 1756 aa22.27■■□□□ 1.16
SMPD4-214ENST00000455548 BAG6P46379 1132 aa22.27■■□□□ 1.16
SMPD4-214ENST00000455548 WASHC2AQ641Q2 1341 aa22.26■■□□□ 1.15
SMPD4-214ENST00000455548 HSP90AB2PQ58FF8 381 aa22.25■■□□□ 1.15
SMPD4-214ENST00000455548 PPM1GO15355 546 aaPredicted RBP22.24■■□□□ 1.15
SMPD4-214ENST00000455548 TRIM37O94972 964 aa22.24■■□□□ 1.15
SMPD4-214ENST00000455548 DEFB132Q7Z7B7 95 aa22.24■■□□□ 1.15
SMPD4-214ENST00000455548 MORC1Q86VD1 984 aa22.24■■□□□ 1.15
SMPD4-214ENST00000455548 MARCH10Q8NA82 808 aaPredicted RBP22.24■■□□□ 1.15
SMPD4-214ENST00000455548 POLKQ9UBT6 870 aa22.24■■□□□ 1.15
SMPD4-214ENST00000455548 SBF2Q86WG5 1849 aa22.23■■□□□ 1.15
SMPD4-214ENST00000455548 TNNT2P45379 298 aaPredicted RBP22.23■■□□□ 1.15
SMPD4-214ENST00000455548 BCL9O00512 1426 aa22.23■■□□□ 1.15
SMPD4-214ENST00000455548 AMER1Q5JTC6 1135 aaPredicted RBP22.21■■□□□ 1.15
SMPD4-214ENST00000455548 NBPF6Q5VWK0 638 aa22.2■■□□□ 1.14
SMPD4-214ENST00000455548 NBPF4Q96M43 638 aa22.2■■□□□ 1.14
SMPD4-214ENST00000455548 PER1O15534 1290 aaPredicted RBP22.19■■□□□ 1.14
SMPD4-214ENST00000455548 APBA3O96018 575 aa22.18■■□□□ 1.14
SMPD4-214ENST00000455548 EN1Q05925 392 aaPredicted RBP22.17■■□□□ 1.14
SMPD4-214ENST00000455548 USHBP1Q8N6Y0 703 aa22.16■■□□□ 1.14
SMPD4-214ENST00000455548 RAPGEF4Q8WZA2 1011 aa22.16■■□□□ 1.14
SMPD4-214ENST00000455548 PARD3Q8TEW0 1356 aa22.15■■□□□ 1.14
SMPD4-214ENST00000455548 NPC1L1Q9UHC9 1359 aa22.15■■□□□ 1.14
SMPD4-214ENST00000455548 BCL11BQ9C0K0 894 aaPredicted RBP22.15■■□□□ 1.14
SMPD4-214ENST00000455548 MEGF6O75095 1541 aa22.15■■□□□ 1.14
SMPD4-214ENST00000455548 ZCRB1Q8TBF4 217 aaKnown RBP22.14■■□□□ 1.13
SMPD4-214ENST00000455548 KAT6BQ8WYB5 2073 aa22.14■■□□□ 1.13
SMPD4-214ENST00000455548 NCAPD2Q15021 1401 aa22.14■■□□□ 1.13
SMPD4-214ENST00000455548 TATP17735 454 aaPredicted RBP22.13■■□□□ 1.13
SMPD4-214ENST00000455548 EIF4A2Q14240 407 aaKnown RBP22.12■■□□□ 1.13
SMPD4-214ENST00000455548 DDX54Q8TDD1 881 aaKnown RBP22.12■■□□□ 1.13
SMPD4-214ENST00000455548 CAMKK2Q96RR4 588 aa22.12■■□□□ 1.13
SMPD4-214ENST00000455548 RGPD3A6NKT7 1758 aaPredicted RBP22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms