RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 ITPKCQ96DU7 683 aa8.58□□□□□ -1.04
USP40-209ENST00000452724 ZFP42Q96MM3 310 aa8.58□□□□□ -1.04
USP40-209ENST00000452724 ZFAND3Q9H8U3 227 aa8.57□□□□□ -1.04
USP40-209ENST00000452724 PGPEP1Q9NXJ5 209 aa8.57□□□□□ -1.04
USP40-209ENST00000452724 DHX9Q08211 1270 aaKnown RBP8.56□□□□□ -1.04
USP40-209ENST00000452724 PURBQ96QR8 312 aaKnown RBP8.56□□□□□ -1.04
USP40-209ENST00000452724 HMX1Q9NP08 348 aaPredicted RBP8.56□□□□□ -1.04
USP40-209ENST00000452724 TERTO14746 1132 aaKnown RBP8.55□□□□□ -1.04
USP40-209ENST00000452724 NBPF20Q3BBV1 942 aa8.55□□□□□ -1.04
USP40-209ENST00000452724 SLC16A10Q8TF71 515 aa8.55□□□□□ -1.04
USP40-209ENST00000452724 KCTD15Q96SI1 283 aaPredicted RBP8.55□□□□□ -1.04
USP40-209ENST00000452724 ADAM32Q8TC27 787 aa8.54□□□□□ -1.04
USP40-209ENST00000452724 EPS8L1Q8TE68 723 aa8.54□□□□□ -1.04
USP40-209ENST00000452724 BMP2P12643 396 aa8.53□□□□□ -1.04
USP40-209ENST00000452724 MEIOBQ8N635 442 aa8.53□□□□□ -1.04
USP40-209ENST00000452724 TRIM52Q96A61 297 aa8.53□□□□□ -1.04
USP40-209ENST00000452724 APBB1O00213 710 aa8.52□□□□□ -1.05
USP40-209ENST00000452724 NFX1Q12986 1120 aaKnown RBP8.52□□□□□ -1.05
USP40-209ENST00000452724 C6orf118Q5T5N4 469 aa8.52□□□□□ -1.05
USP40-209ENST00000452724 PPP1R26Q5T8A7 1209 aaPredicted RBP8.52□□□□□ -1.05
USP40-209ENST00000452724 DZIP3Q86Y13 1208 aaKnown RBP8.52□□□□□ -1.05
USP40-209ENST00000452724 NPAS3Q8IXF0 933 aa8.52□□□□□ -1.05
USP40-209ENST00000452724 LINC00528Q8N1L1 170 aa8.52□□□□□ -1.05
USP40-209ENST00000452724 BANK1Q8NDB2 785 aa8.52□□□□□ -1.05
USP40-209ENST00000452724 TSEN34Q9BSV6 310 aaKnown RBP8.52□□□□□ -1.05
USP40-209ENST00000452724 NXF1Q9UBU9 619 aaKnown RBP8.52□□□□□ -1.05
USP40-209ENST00000452724 MAN1A2O60476 641 aa8.5□□□□□ -1.05
USP40-209ENST00000452724 OCSTAMPQ9BR26 566 aa8.5□□□□□ -1.05
USP40-209ENST00000452724 TRIM34Q9BYJ4 488 aa8.5□□□□□ -1.05
USP40-209ENST00000452724 SOCS7O14512 581 aa8.49□□□□□ -1.05
USP40-209ENST00000452724 INTS6LQ5JSJ4 861 aaKnown RBP8.49□□□□□ -1.05
USP40-209ENST00000452724 LCE2AQ5TA79 106 aaPredicted RBP8.49□□□□□ -1.05
USP40-209ENST00000452724 ZNF592Q92610 1267 aa8.49□□□□□ -1.05
USP40-209ENST00000452724 ZBBXA8MT70 800 aa8.48□□□□□ -1.05
USP40-209ENST00000452724 Q6ZVU0 165 aa8.47□□□□□ -1.05
USP40-209ENST00000452724 IRF7Q92985 503 aa8.47□□□□□ -1.05
USP40-209ENST00000452724 ZNF330Q9Y3S2 320 aaPredicted RBP8.47□□□□□ -1.05
USP40-209ENST00000452724 RAB15P59190 212 aa8.46□□□□□ -1.06
USP40-209ENST00000452724 GJD4Q96KN9 370 aaPredicted RBP8.46□□□□□ -1.06
USP40-209ENST00000452724 WIPF1O43516 503 aa8.45□□□□□ -1.06
USP40-209ENST00000452724 MCCD1P59942 119 aaPredicted RBP8.45□□□□□ -1.06
USP40-209ENST00000452724 INSM1Q01101 510 aaPredicted RBP8.45□□□□□ -1.06
USP40-209ENST00000452724 CCDC125Q86Z20 511 aa8.45□□□□□ -1.06
USP40-209ENST00000452724 SEPT12Q8IYM1 358 aa8.45□□□□□ -1.06
USP40-209ENST00000452724 PCDHB9Q9Y5E1 797 aa8.45□□□□□ -1.06
USP40-209ENST00000452724 NDUFB9Q9Y6M9 179 aa8.45□□□□□ -1.06
USP40-209ENST00000452724 H3BM21 787 aa8.44□□□□□ -1.06
USP40-209ENST00000452724 CBLBQ13191 982 aa8.44□□□□□ -1.06
USP40-209ENST00000452724 PRM3Q9NNZ6 103 aa8.44□□□□□ -1.06
USP40-209ENST00000452724 GTF3C3Q9Y5Q9 886 aa8.44□□□□□ -1.06
USP40-209ENST00000452724 SOS2Q07890 1332 aaPredicted RBP8.44□□□□□ -1.06
USP40-209ENST00000452724 TTLL8A6PVC2 850 aa8.43□□□□□ -1.06
USP40-209ENST00000452724 SOBPA7XYQ1 873 aa8.43□□□□□ -1.06
USP40-209ENST00000452724 FBXO45P0C2W1 286 aa8.43□□□□□ -1.06
USP40-209ENST00000452724 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.43□□□□□ -1.06
USP40-209ENST00000452724 ESPNB1AK53 854 aa8.42□□□□□ -1.06
USP40-209ENST00000452724 NR1H3Q13133 447 aa8.42□□□□□ -1.06
USP40-209ENST00000452724 RNF20Q5VTR2 975 aa8.42□□□□□ -1.06
USP40-209ENST00000452724 ERVH48-1M5A8F1 160 aa8.41□□□□□ -1.06
USP40-209ENST00000452724 SPINT1O43278 529 aa8.41□□□□□ -1.06
USP40-209ENST00000452724 VEGFBP49765 207 aa8.41□□□□□ -1.06
USP40-209ENST00000452724 ZNF784Q8NCA9 323 aaPredicted RBP8.41□□□□□ -1.06
USP40-209ENST00000452724 MTMR14Q8NCE2 650 aa8.41□□□□□ -1.06
USP40-209ENST00000452724 RELBQ01201 579 aa8.4□□□□□ -1.06
USP40-209ENST00000452724 TMPRSS4Q9NRS4 437 aa8.4□□□□□ -1.06
USP40-209ENST00000452724 DNMT3LQ9UJW3 386 aa8.4□□□□□ -1.06
USP40-209ENST00000452724 ADH1AP07327 375 aa8.39□□□□□ -1.07
USP40-209ENST00000452724 AGBL1Q96MI9 1066 aa8.39□□□□□ -1.07
USP40-209ENST00000452724 SNRKQ9NRH2 765 aa8.39□□□□□ -1.07
USP40-209ENST00000452724 POLMQ9NP87 494 aaPredicted RBP8.38□□□□□ -1.07
USP40-209ENST00000452724 GIGYF1O75420 1035 aaPredicted RBP8.37□□□□□ -1.07
USP40-209ENST00000452724 GMPRP36959 345 aa8.37□□□□□ -1.07
USP40-209ENST00000452724 ESF1Q9H501 851 aaKnown RBP8.37□□□□□ -1.07
USP40-209ENST00000452724 STK17AQ9UEE5 414 aa8.37□□□□□ -1.07
USP40-209ENST00000452724 FIGNL2A6NMB9 653 aa8.36□□□□□ -1.07
USP40-209ENST00000452724 LILRA1O75019 489 aa8.36□□□□□ -1.07
USP40-209ENST00000452724 PPFIA3O75145 1194 aa8.36□□□□□ -1.07
USP40-209ENST00000452724 PTGIRP43119 386 aa8.36□□□□□ -1.07
USP40-209ENST00000452724 LCE2CQ5TA81 110 aa8.36□□□□□ -1.07
USP40-209ENST00000452724 INSM2Q96T92 566 aaPredicted RBP8.36□□□□□ -1.07
USP40-209ENST00000452724 CYLDQ9NQC7 956 aa8.36□□□□□ -1.07
USP40-209ENST00000452724 FAM181BA6NEQ2 426 aa8.35□□□□□ -1.07
USP40-209ENST00000452724 VSIG8P0DPA2 414 aa8.35□□□□□ -1.07
USP40-209ENST00000452724 ZNF395Q9H8N7 513 aaPredicted RBP8.35□□□□□ -1.07
USP40-209ENST00000452724 CTSOP43234 321 aaPredicted RBP8.34□□□□□ -1.07
USP40-209ENST00000452724 PTSQ03393 145 aa8.34□□□□□ -1.07
USP40-209ENST00000452724 ERBB4Q15303 1308 aa8.33□□□□□ -1.08
USP40-209ENST00000452724 ATP5J2-PTCD1G3V325 749 aa8.33□□□□□ -1.08
USP40-209ENST00000452724 ADD1P35611 737 aaKnown RBP8.33□□□□□ -1.08
USP40-209ENST00000452724 CC2D2BQ6DHV5 1058 aa8.33□□□□□ -1.08
USP40-209ENST00000452724 EIF4G2P78344 907 aaKnown RBP eCLIP8.32□□□□□ -1.08
USP40-209ENST00000452724 PCDHB11Q9Y5F2 797 aa8.32□□□□□ -1.08
USP40-209ENST00000452724 GPR37L1O60883 481 aa8.31□□□□□ -1.08
USP40-209ENST00000452724 ERVK-9P63128 1117 aa8.31□□□□□ -1.08
USP40-209ENST00000452724 FLIIQ13045 1269 aa8.31□□□□□ -1.08
USP40-209ENST00000452724 CCDC155Q8N6L0 562 aa8.31□□□□□ -1.08
USP40-209ENST00000452724 ZSCAN1Q8NBB4 408 aa8.31□□□□□ -1.08
USP40-209ENST00000452724 RNF217Q8TC41 542 aa8.31□□□□□ -1.08
USP40-209ENST00000452724 TBC1D2BQ9UPU7 963 aa8.31□□□□□ -1.08
USP40-209ENST00000452724 CYP2U1Q7Z449 544 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms