RNA–Protein interactions for RNA: ENST00000451893.5

C9orf3-208, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 514 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-208ENST00000451893 ARHGEF25Q86VW2 580 aa30.34■■■□□ 2.45
C9orf3-208ENST00000451893 TNS1Q9HBL0 1735 aaKnown RBP30.33■■■□□ 2.45
C9orf3-208ENST00000451893 PARP4Q9UKK3 1724 aaKnown RBP30.33■■■□□ 2.45
C9orf3-208ENST00000451893 WDR17Q8IZU2 1322 aa30.33■■■□□ 2.45
C9orf3-208ENST00000451893 NME9Q86XW9 330 aa30.32■■■□□ 2.44
C9orf3-208ENST00000451893 PUS7Q96PZ0 661 aaKnown RBP30.32■■■□□ 2.44
C9orf3-208ENST00000451893 COL18A1P39060 1754 aa30.32■■■□□ 2.44
C9orf3-208ENST00000451893 EDC4Q6P2E9 1401 aaKnown RBP30.31■■■□□ 2.44
C9orf3-208ENST00000451893 APBA3O96018 575 aa30.31■■■□□ 2.44
C9orf3-208ENST00000451893 DDB1Q16531 1140 aa30.3■■■□□ 2.44
C9orf3-208ENST00000451893 AXIN2Q9Y2T1 843 aa30.3■■■□□ 2.44
C9orf3-208ENST00000451893 A0A1W2PP64 1363 aa30.29■■■□□ 2.44
C9orf3-208ENST00000451893 NINLQ9Y2I6 1382 aa30.29■■■□□ 2.44
C9orf3-208ENST00000451893 C11orf95C9JLR9 678 aaPredicted RBP30.29■■■□□ 2.44
C9orf3-208ENST00000451893 CD163L1Q9NR16 1453 aa30.29■■■□□ 2.44
C9orf3-208ENST00000451893 NFAT5O94916 1531 aa30.28■■■□□ 2.44
C9orf3-208ENST00000451893 USP47Q96K76 1375 aa30.28■■■□□ 2.44
C9orf3-208ENST00000451893 TMF1P82094 1093 aa30.27■■■□□ 2.44
C9orf3-208ENST00000451893 USP31Q70CQ4 1352 aa30.27■■■□□ 2.44
C9orf3-208ENST00000451893 LTN1O94822 1766 aa30.26■■■□□ 2.44
C9orf3-208ENST00000451893 PSDA5PKW4 1024 aaPredicted RBP30.26■■■□□ 2.43
C9orf3-208ENST00000451893 CDCA7Q9BWT1 371 aaPredicted RBP30.26■■■□□ 2.43
C9orf3-208ENST00000451893 WNK3Q9BYP7 1800 aa30.26■■■□□ 2.43
C9orf3-208ENST00000451893 DISP2A7MBM2 1401 aa30.25■■■□□ 2.43
C9orf3-208ENST00000451893 EZH2Q15910 746 aaKnown RBP30.25■■■□□ 2.43
C9orf3-208ENST00000451893 TESK2Q96S53 571 aa30.25■■■□□ 2.43
C9orf3-208ENST00000451893 USP54Q70EL1 1684 aa30.24■■■□□ 2.43
C9orf3-208ENST00000451893 OVOS2A0A0G2JMS6 1433 aa30.24■■■□□ 2.43
C9orf3-208ENST00000451893 OVOS2A0A0J9YW53 1432 aa30.24■■■□□ 2.43
C9orf3-208ENST00000451893 OVOS2Q6IE36 1432 aa30.24■■■□□ 2.43
C9orf3-208ENST00000451893 LRRC37A3O60309 1634 aa30.24■■■□□ 2.43
C9orf3-208ENST00000451893 ABCC6O95255 1503 aa30.23■■■□□ 2.43
C9orf3-208ENST00000451893 CARD10Q9BWT7 1032 aa30.23■■■□□ 2.43
C9orf3-208ENST00000451893 CCDC7Q96M83 1385 aa30.2■■■□□ 2.43
C9orf3-208ENST00000451893 CDCA8Q53HL2 280 aa30.2■■■□□ 2.43
C9orf3-208ENST00000451893 PARD3Q8TEW0 1356 aa30.19■■■□□ 2.42
C9orf3-208ENST00000451893 COG3Q96JB2 828 aa30.19■■■□□ 2.42
C9orf3-208ENST00000451893 NLRP2Q9NX02 1062 aa30.19■■■□□ 2.42
C9orf3-208ENST00000451893 TIMELESSQ9UNS1 1208 aa30.19■■■□□ 2.42
C9orf3-208ENST00000451893 EXOC5O00471 708 aa30.16■■■□□ 2.42
C9orf3-208ENST00000451893 R3HDM1Q15032 1099 aaKnown RBP30.16■■■□□ 2.42
C9orf3-208ENST00000451893 CAMKK2Q96RR4 588 aa30.16■■■□□ 2.42
C9orf3-208ENST00000451893 ANKRD36BQ8N2N9 1353 aa30.15■■■□□ 2.42
C9orf3-208ENST00000451893 NBPF14Q5TI25 921 aa30.14■■■□□ 2.42
C9orf3-208ENST00000451893 ERBB3P21860 1342 aa30.14■■■□□ 2.42
C9orf3-208ENST00000451893 ANKRD24Q8TF21 1146 aa30.13■■■□□ 2.41
C9orf3-208ENST00000451893 SBF2Q86WG5 1849 aa30.11■■■□□ 2.41
C9orf3-208ENST00000451893 PEAK1Q9H792 1746 aa30.1■■■□□ 2.41
C9orf3-208ENST00000451893 AMPHP49418 695 aa30.09■■■□□ 2.41
C9orf3-208ENST00000451893 LTV1Q96GA3 475 aaPredicted RBP30.09■■■□□ 2.41
C9orf3-208ENST00000451893 RREB1Q92766 1687 aa30.08■■■□□ 2.41
C9orf3-208ENST00000451893 MARCH10Q8NA82 808 aaPredicted RBP30.08■■■□□ 2.41
C9orf3-208ENST00000451893 IL2RBP14784 551 aa30.07■■■□□ 2.4
C9orf3-208ENST00000451893 LRP5O75197 1615 aa30.07■■■□□ 2.4
C9orf3-208ENST00000451893 NUP188Q5SRE5 1749 aa30.06■■■□□ 2.4
C9orf3-208ENST00000451893 TNS2Q63HR2 1409 aa30.05■■■□□ 2.4
C9orf3-208ENST00000451893 IP6K1Q92551 441 aa30.05■■■□□ 2.4
C9orf3-208ENST00000451893 BCL11BQ9C0K0 894 aaPredicted RBP30.05■■■□□ 2.4
C9orf3-208ENST00000451893 KAT6BQ8WYB5 2073 aa30.04■■■□□ 2.4
C9orf3-208ENST00000451893 FAM208AQ9UK61 1670 aaKnown RBP30.04■■■□□ 2.4
C9orf3-208ENST00000451893 POLR3GLQ9BT43 218 aa30.03■■■□□ 2.4
C9orf3-208ENST00000451893 KIF20BQ96Q89 1820 aa30.02■■■□□ 2.4
C9orf3-208ENST00000451893 GGNBP2Q9H3C7 697 aa30.02■■■□□ 2.4
C9orf3-208ENST00000451893 MAP3K19Q56UN5 1328 aa30■■■□□ 2.39
C9orf3-208ENST00000451893 RGPD3A6NKT7 1758 aaPredicted RBP30■■■□□ 2.39
C9orf3-208ENST00000451893 RGPD4Q7Z3J3 1758 aa30■■■□□ 2.39
C9orf3-208ENST00000451893 PLSCR1O15162 318 aa29.98■■■□□ 2.39
C9orf3-208ENST00000451893 BCL9O00512 1426 aa29.97■■■□□ 2.39
C9orf3-208ENST00000451893 SRCAPQ6ZRS2 3230 aa29.97■■■□□ 2.39
C9orf3-208ENST00000451893 HOXC9P31274 260 aa29.97■■■□□ 2.39
C9orf3-208ENST00000451893 FYB1O15117 783 aa29.96■■■□□ 2.39
C9orf3-208ENST00000451893 SMG6Q86US8 1419 aaKnown RBP29.96■■■□□ 2.39
C9orf3-208ENST00000451893 FBLN1P23142 703 aa29.95■■■□□ 2.39
C9orf3-208ENST00000451893 RRS1Q15050 365 aaKnown RBP29.95■■■□□ 2.39
C9orf3-208ENST00000451893 ACSBG1Q96GR2 724 aa29.95■■■□□ 2.39
C9orf3-208ENST00000451893 RTL1A6NKG5 1358 aa29.93■■■□□ 2.38
C9orf3-208ENST00000451893 MYOM1P52179 1685 aa29.92■■■□□ 2.38
C9orf3-208ENST00000451893 PTF1AQ7RTS3 328 aa29.92■■■□□ 2.38
C9orf3-208ENST00000451893 NSD3Q9BZ95 1437 aa29.92■■■□□ 2.38
C9orf3-208ENST00000451893 DDX54Q8TDD1 881 aaKnown RBP29.91■■■□□ 2.38
C9orf3-208ENST00000451893 EIF4G2P78344 907 aaKnown RBP eCLIP29.9■■■□□ 2.38
C9orf3-208ENST00000451893 NHSQ6T4R5 1651 aa29.9■■■□□ 2.38
C9orf3-208ENST00000451893 RGPD2P0DJD1 1756 aa29.89■■■□□ 2.38
C9orf3-208ENST00000451893 KCNQ2O43526 872 aa29.87■■■□□ 2.37
C9orf3-208ENST00000451893 PPP1R1BQ9UD71 204 aaPredicted RBP29.86■■■□□ 2.37
C9orf3-208ENST00000451893 TXNRD1Q16881 649 aa29.85■■■□□ 2.37
C9orf3-208ENST00000451893 STK32BQ9NY57 414 aa29.85■■■□□ 2.37
C9orf3-208ENST00000451893 CGNL1Q0VF96 1302 aa29.84■■■□□ 2.37
C9orf3-208ENST00000451893 RAPGEF4Q8WZA2 1011 aa29.83■■■□□ 2.37
C9orf3-208ENST00000451893 FLT4P35916 1363 aa29.82■■■□□ 2.36
C9orf3-208ENST00000451893 PPM1GO15355 546 aaPredicted RBP29.82■■■□□ 2.36
C9orf3-208ENST00000451893 SYTL4Q96C24 671 aaPredicted RBP29.82■■■□□ 2.36
C9orf3-208ENST00000451893 CARD14Q9BXL6 1004 aa29.82■■■□□ 2.36
C9orf3-208ENST00000451893 SPON1Q9HCB6 807 aa29.82■■■□□ 2.36
C9orf3-208ENST00000451893 BTAF1O14981 1849 aa29.82■■■□□ 2.36
C9orf3-208ENST00000451893 HSPA5P11021 654 aaKnown RBP29.8■■■□□ 2.36
C9orf3-208ENST00000451893 USHBP1Q8N6Y0 703 aa29.8■■■□□ 2.36
C9orf3-208ENST00000451893 ZCRB1Q8TBF4 217 aaKnown RBP29.8■■■□□ 2.36
C9orf3-208ENST00000451893 ANO8Q9HCE9 1232 aaPredicted RBP29.8■■■□□ 2.36
C9orf3-208ENST00000451893 TATP17735 454 aaPredicted RBP29.78■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms