RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 CASKIN1Q8WXD9 1431 aa9.22□□□□□ -0.93
NEDD9-204ENST00000448183 CBFA2T2O43439 604 aa9.22□□□□□ -0.93
NEDD9-204ENST00000448183 NBPF8Q3BBV2 869 aa9.22□□□□□ -0.93
NEDD9-204ENST00000448183 ZSCAN31Q96LW9 406 aaPredicted RBP9.22□□□□□ -0.93
NEDD9-204ENST00000448183 NUP62CLQ9H1M0 184 aa9.22□□□□□ -0.93
NEDD9-204ENST00000448183 LUC7LQ9NQ29 371 aaKnown RBP9.22□□□□□ -0.93
NEDD9-204ENST00000448183 HFM1A2PYH4 1435 aa9.21□□□□□ -0.93
NEDD9-204ENST00000448183 TOP2BQ02880 1626 aa9.21□□□□□ -0.93
NEDD9-204ENST00000448183 KIAA0754O94854 1291 aa9.21□□□□□ -0.93
NEDD9-204ENST00000448183 HDGFL1Q5TGJ6 251 aa9.21□□□□□ -0.93
NEDD9-204ENST00000448183 BLOC1S2Q6QNY1 142 aa9.21□□□□□ -0.93
NEDD9-204ENST00000448183 PDCL2Q8N4E4 241 aa9.21□□□□□ -0.93
NEDD9-204ENST00000448183 GOLGA6L10A6NI86 522 aa9.21□□□□□ -0.94
NEDD9-204ENST00000448183 STK3Q13188 491 aa9.21□□□□□ -0.94
NEDD9-204ENST00000448183 ZNF428Q96B54 188 aa9.21□□□□□ -0.94
NEDD9-204ENST00000448183 CDK5RAP3Q96JB5 506 aa9.21□□□□□ -0.94
NEDD9-204ENST00000448183 SPATA32Q96LK8 384 aa9.21□□□□□ -0.94
NEDD9-204ENST00000448183 CFAP45Q9UL16 551 aa9.21□□□□□ -0.94
NEDD9-204ENST00000448183 ERLIN2O94905 339 aa9.21□□□□□ -0.94
NEDD9-204ENST00000448183 SKIDA1Q1XH10 827 aa9.21□□□□□ -0.94
NEDD9-204ENST00000448183 CCAR1Q8IX12 1150 aaKnown RBP9.21□□□□□ -0.94
NEDD9-204ENST00000448183 PODXL2Q9NZ53 605 aa9.21□□□□□ -0.94
NEDD9-204ENST00000448183 PPP6R1Q9UPN7 881 aa9.21□□□□□ -0.94
NEDD9-204ENST00000448183 FILIP1Q7Z7B0 1213 aa9.2□□□□□ -0.94
NEDD9-204ENST00000448183 TRIM22Q8IYM9 498 aa9.2□□□□□ -0.94
NEDD9-204ENST00000448183 EFCAB5A4FU69 1503 aa9.2□□□□□ -0.94
NEDD9-204ENST00000448183 MSH5O43196 834 aa9.2□□□□□ -0.94
NEDD9-204ENST00000448183 CCDC184Q52MB2 194 aa9.2□□□□□ -0.94
NEDD9-204ENST00000448183 SLC12A5Q9H2X9 1139 aa9.2□□□□□ -0.94
NEDD9-204ENST00000448183 MTMR7Q9Y216 660 aa9.2□□□□□ -0.94
NEDD9-204ENST00000448183 STIM1Q13586 685 aa9.2□□□□□ -0.94
NEDD9-204ENST00000448183 OSCARQ8IYS5 282 aa9.2□□□□□ -0.94
NEDD9-204ENST00000448183 FBXO3Q9UK99 471 aa9.2□□□□□ -0.94
NEDD9-204ENST00000448183 PLEKHO1Q53GL0 409 aaPredicted RBP9.2□□□□□ -0.94
NEDD9-204ENST00000448183 RPAP2Q8IXW5 612 aaPredicted RBP9.2□□□□□ -0.94
NEDD9-204ENST00000448183 TXLNBQ8N3L3 684 aa9.2□□□□□ -0.94
NEDD9-204ENST00000448183 CCDC158Q5M9N0 1113 aa9.19□□□□□ -0.94
NEDD9-204ENST00000448183 CCDC181Q5TID7 509 aa9.19□□□□□ -0.94
NEDD9-204ENST00000448183 FAM177A1Q8N128 213 aaPredicted RBP9.19□□□□□ -0.94
NEDD9-204ENST00000448183 SLC3A2P08195 630 aaKnown RBP9.19□□□□□ -0.94
NEDD9-204ENST00000448183 NUTM2GQ5VZR2 741 aa9.19□□□□□ -0.94
NEDD9-204ENST00000448183 UBXN4Q92575 508 aa9.19□□□□□ -0.94
NEDD9-204ENST00000448183 UPF3BQ9BZI7 483 aaKnown RBP9.19□□□□□ -0.94
NEDD9-204ENST00000448183 DEF6Q9H4E7 631 aa9.19□□□□□ -0.94
NEDD9-204ENST00000448183 PDRG1Q9NUG6 133 aa9.19□□□□□ -0.94
NEDD9-204ENST00000448183 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.19□□□□□ -0.94
NEDD9-204ENST00000448183 GOLGA6L7A0A1B0GV03 622 aa9.18□□□□□ -0.94
NEDD9-204ENST00000448183 SYCE3A1L190 88 aa9.18□□□□□ -0.94
NEDD9-204ENST00000448183 KIF2AO00139 706 aaPredicted RBP9.18□□□□□ -0.94
NEDD9-204ENST00000448183 USP8P40818 1118 aa9.18□□□□□ -0.94
NEDD9-204ENST00000448183 MAP3K11Q16584 847 aa9.18□□□□□ -0.94
NEDD9-204ENST00000448183 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.18□□□□□ -0.94
NEDD9-204ENST00000448183 KIAA1107Q9UPP5 1409 aa9.18□□□□□ -0.94
NEDD9-204ENST00000448183 SULT6B1Q6IMI4 303 aa9.18□□□□□ -0.94
NEDD9-204ENST00000448183 SAMD1Q6SPF0 538 aaPredicted RBP9.18□□□□□ -0.94
NEDD9-204ENST00000448183 JAKMIP1Q96N16 626 aaKnown RBP9.18□□□□□ -0.94
NEDD9-204ENST00000448183 SLFN5Q08AF3 891 aa9.18□□□□□ -0.94
NEDD9-204ENST00000448183 KRT32Q14532 448 aa9.18□□□□□ -0.94
NEDD9-204ENST00000448183 SYCP1Q15431 976 aa9.18□□□□□ -0.94
NEDD9-204ENST00000448183 KRT18P05783 430 aaKnown RBP9.17□□□□□ -0.94
NEDD9-204ENST00000448183 HSP90AB3PQ58FF7 597 aa9.17□□□□□ -0.94
NEDD9-204ENST00000448183 TOPBP1Q92547 1522 aa9.17□□□□□ -0.94
NEDD9-204ENST00000448183 SMTNL1A8MU46 457 aa9.17□□□□□ -0.94
NEDD9-204ENST00000448183 TTC39AQ5SRH9 613 aa9.17□□□□□ -0.94
NEDD9-204ENST00000448183 PRXQ9BXM0 1461 aa9.17□□□□□ -0.94
NEDD9-204ENST00000448183 IQCEQ6IPM2 695 aa9.17□□□□□ -0.94
NEDD9-204ENST00000448183 NACAP1Q9BZK3 213 aa9.17□□□□□ -0.94
NEDD9-204ENST00000448183 IKQ13123 557 aaPredicted RBP9.17□□□□□ -0.94
NEDD9-204ENST00000448183 CDKL5O76039 1030 aa9.16□□□□□ -0.94
NEDD9-204ENST00000448183 NEFHP12036 1026 aa9.16□□□□□ -0.94
NEDD9-204ENST00000448183 TAF3Q5VWG9 929 aa9.16□□□□□ -0.94
NEDD9-204ENST00000448183 SRGAP3O43295 1099 aa9.16□□□□□ -0.94
NEDD9-204ENST00000448183 MAP4K4O95819 1239 aaPredicted RBP9.16□□□□□ -0.94
NEDD9-204ENST00000448183 ABTB2Q8N961 1025 aa9.16□□□□□ -0.94
NEDD9-204ENST00000448183 NOL7Q9UMY1 257 aaKnown RBP9.16□□□□□ -0.94
NEDD9-204ENST00000448183 TMCO3Q6UWJ1 677 aa9.16□□□□□ -0.94
NEDD9-204ENST00000448183 PRAM1Q96QH2 718 aa9.16□□□□□ -0.94
NEDD9-204ENST00000448183 SIL1Q9H173 461 aa9.16□□□□□ -0.94
NEDD9-204ENST00000448183 CTNNA3Q9UI47 895 aa9.16□□□□□ -0.94
NEDD9-204ENST00000448183 ERBINQ96RT1 1412 aa9.15□□□□□ -0.94
NEDD9-204ENST00000448183 CWC27Q6UX04 472 aaKnown RBP9.15□□□□□ -0.94
NEDD9-204ENST00000448183 AACSQ86V21 672 aa9.15□□□□□ -0.94
NEDD9-204ENST00000448183 CCDC102AQ96A19 550 aa9.15□□□□□ -0.94
NEDD9-204ENST00000448183 CNNM1Q9NRU3 951 aa9.15□□□□□ -0.94
NEDD9-204ENST00000448183 ARAP1Q96P48 1450 aa9.15□□□□□ -0.94
NEDD9-204ENST00000448183 CCDC69A6NI79 296 aa9.15□□□□□ -0.94
NEDD9-204ENST00000448183 PTPN14Q15678 1187 aa9.15□□□□□ -0.94
NEDD9-204ENST00000448183 ARHGAP29Q52LW3 1261 aa9.15□□□□□ -0.94
NEDD9-204ENST00000448183 TMEM57Q8N5G2 664 aa9.15□□□□□ -0.94
NEDD9-204ENST00000448183 SFPQP23246 707 aaKnown RBP eCLIP9.15□□□□□ -0.944e-6■■□□□ 13.1
NEDD9-204ENST00000448183 KIF6Q6ZMV9 814 aa9.15□□□□□ -0.94
NEDD9-204ENST00000448183 PLCD4Q9BRC7 762 aa9.15□□□□□ -0.94
NEDD9-204ENST00000448183 GBP3Q9H0R5 595 aa9.15□□□□□ -0.94
NEDD9-204ENST00000448183 IL1RAPL2Q9NP60 686 aa9.15□□□□□ -0.94
NEDD9-204ENST00000448183 GPRASP1Q5JY77 1395 aa9.15□□□□□ -0.94
NEDD9-204ENST00000448183 SYNJ1O43426 1573 aa9.15□□□□□ -0.95
NEDD9-204ENST00000448183 EPB41L2O43491 1005 aaKnown RBP9.15□□□□□ -0.95
NEDD9-204ENST00000448183 ZRSR2Q15696 482 aaKnown RBP9.15□□□□□ -0.95
NEDD9-204ENST00000448183 ZNF692Q9BU19 519 aaPredicted RBP9.15□□□□□ -0.95
NEDD9-204ENST00000448183 GNL3LQ9NVN8 582 aaKnown RBP9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms