RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 NR6A1Q15406 480 aa3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 CRTC2Q53ET0 693 aaPredicted RBP3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 SLF2Q8IX21 1173 aa3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 ASB16Q96NS5 453 aa3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 VTI1BQ9UEU0 232 aa3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 USP46P62068 366 aa3.18□□□□□ -1.9
CCDC88A-208ENST00000444458 EPS8L1Q8TE68 723 aa3.18□□□□□ -1.9
CCDC88A-208ENST00000444458 CUEDC1Q9NWM3 386 aaPredicted RBP3.18□□□□□ -1.9
CCDC88A-208ENST00000444458 TRIM35Q9UPQ4 493 aa3.18□□□□□ -1.9
CCDC88A-208ENST00000444458 PCDHGA10Q9Y5H3 936 aa3.18□□□□□ -1.9
CCDC88A-208ENST00000444458 DPYDQ12882 1025 aa3.18□□□□□ -1.9
CCDC88A-208ENST00000444458 AAMPQ13685 434 aa3.18□□□□□ -1.9
CCDC88A-208ENST00000444458 RNF34Q969K3 372 aa3.18□□□□□ -1.9
CCDC88A-208ENST00000444458 OCEL1Q9H607 264 aa3.18□□□□□ -1.9
CCDC88A-208ENST00000444458 PSME1Q06323 249 aa3.18□□□□□ -1.9
CCDC88A-208ENST00000444458 NR1H3Q13133 447 aa3.18□□□□□ -1.9
CCDC88A-208ENST00000444458 CCDC181Q5TID7 509 aa3.18□□□□□ -1.9
CCDC88A-208ENST00000444458 FBXO33Q7Z6M2 555 aa3.18□□□□□ -1.9
CCDC88A-208ENST00000444458 MORC4Q8TE76 937 aa3.18□□□□□ -1.9
CCDC88A-208ENST00000444458 PEX14O75381 377 aa3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 FMNL1O95466 1100 aaPredicted RBP3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 NCOA4Q13772 614 aa3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 SWI5Q1ZZU3 235 aa3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 VPS37DQ86XT2 251 aa3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 VTI1AQ96AJ9 217 aa3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 KLHL42Q9P2K6 505 aa3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 MAPK8P45983 427 aa3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 FGD1P98174 961 aa3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 SOGA3Q5TF21 947 aa3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 RNF135Q8IUD6 432 aa3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 PRIMPOLQ96LW4 560 aa3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 MKNK1Q9BUB5 465 aa3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 ICMTO60725 284 aa3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 STK10O94804 968 aaKnown RBP3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 DNAJB2P25686 324 aa3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 BMS1Q14692 1282 aaKnown RBP3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 C6orf132Q5T0Z8 1188 aa3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 OGFOD1Q8N543 542 aa3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 NFATC2IPQ8NCF5 419 aa3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 EGFL7Q9UHF1 273 aa3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 ATP1A2P50993 1020 aa3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 IRX6P78412 446 aaPredicted RBP3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 HINFPQ9BQA5 517 aa3.17□□□□□ -1.9
CCDC88A-208ENST00000444458 C21orf2O43822 256 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 PRSS12P56730 875 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 ATP2B2Q01814 1243 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 GUCA2AQ02747 115 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 PSMD2Q13200 908 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 PTK7Q13308 1070 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 PDE3BQ13370 1112 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 EML3Q32P44 896 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 TMED8Q6PL24 325 aaPredicted RBP3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 TRIM50Q86XT4 487 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 CDCA7LQ96GN5 454 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 NLRP2Q9NX02 1062 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 INPP5FQ9Y2H2 1132 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 HOXA2O43364 376 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 ZNF76P36508 570 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 ARID5AQ03989 594 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 GRIPAP1Q4V328 841 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 PLEKHM2Q8IWE5 1019 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 MRFAP1L1Q96HT8 127 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 PRDM16Q9HAZ2 1276 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 ZBBXA8MT70 800 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 SORBS3O60504 671 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 GPR37L1O60883 481 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 NEFLP07196 543 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 GTF3C2Q8WUA4 911 aaPredicted RBP3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 MARVELD3Q96A59 401 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 FAM161BQ96MY7 647 aa3.16□□□□□ -1.9
CCDC88A-208ENST00000444458 PPP1R12AO14974 1030 aaPredicted RBP3.15□□□□□ -1.9
CCDC88A-208ENST00000444458 NDUFB5O43674 189 aa3.15□□□□□ -1.9
CCDC88A-208ENST00000444458 FKBP4Q02790 459 aaKnown RBP eCLIP3.15□□□□□ -1.9
CCDC88A-208ENST00000444458 GPR153Q6NV75 609 aa3.15□□□□□ -1.9
CCDC88A-208ENST00000444458 CCAR1Q8IX12 1150 aaKnown RBP3.15□□□□□ -1.9
CCDC88A-208ENST00000444458 ZNF454Q8N9F8 522 aa3.15□□□□□ -1.9
CCDC88A-208ENST00000444458 TGIF2Q9GZN2 237 aa3.15□□□□□ -1.9
CCDC88A-208ENST00000444458 ANO8Q9HCE9 1232 aaPredicted RBP3.15□□□□□ -1.9
CCDC88A-208ENST00000444458 A0A0U1RQG5 324 aaPredicted RBP3.15□□□□□ -1.91
CCDC88A-208ENST00000444458 PLCG2P16885 1265 aa3.15□□□□□ -1.91
CCDC88A-208ENST00000444458 COL19A1Q14993 1142 aa3.15□□□□□ -1.91
CCDC88A-208ENST00000444458 PTCD2Q8WV60 388 aaKnown RBP3.15□□□□□ -1.91
CCDC88A-208ENST00000444458 KCNB2Q92953 911 aa3.15□□□□□ -1.91
CCDC88A-208ENST00000444458 SPACA7Q96KW9 195 aa3.15□□□□□ -1.91
CCDC88A-208ENST00000444458 DNAAF2Q9NVR5 837 aaKnown RBP3.15□□□□□ -1.91
CCDC88A-208ENST00000444458 NOD1Q9Y239 953 aa3.15□□□□□ -1.91
CCDC88A-208ENST00000444458 NOP58Q9Y2X3 529 aaKnown RBP3.15□□□□□ -1.91
CCDC88A-208ENST00000444458 SUGT1Q9Y2Z0 365 aa3.15□□□□□ -1.91
CCDC88A-208ENST00000444458 LDHBP07195 334 aaKnown RBP3.15□□□□□ -1.91
CCDC88A-208ENST00000444458 FBXO45P0C2W1 286 aa3.15□□□□□ -1.91
CCDC88A-208ENST00000444458 SF3B2Q13435 895 aaKnown RBP3.15□□□□□ -1.91
CCDC88A-208ENST00000444458 MTMR3Q13615 1198 aa3.15□□□□□ -1.91
CCDC88A-208ENST00000444458 RGL4Q8IZJ4 473 aa3.15□□□□□ -1.91
CCDC88A-208ENST00000444458 PRPF38AQ8NAV1 312 aaKnown RBP3.15□□□□□ -1.91
CCDC88A-208ENST00000444458 ACBD3Q9H3P7 528 aa3.15□□□□□ -1.91
CCDC88A-208ENST00000444458 SLAIN2Q9P270 581 aa3.15□□□□□ -1.91
CCDC88A-208ENST00000444458 NBPF26B4DH59 902 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 SLC4A3P48751 1232 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 FILIP1Q7Z7B0 1213 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 ZDHHC16Q969W1 377 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms