RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 FLT4P35916 1363 aa21.27■■□□□ 1
USP40-206ENST00000443711 HOXC9P31274 260 aa21.27■■□□□ 1
USP40-206ENST00000443711 ABCC6O95255 1503 aa21.27■■□□□ 1
USP40-206ENST00000443711 PEAK1Q9H792 1746 aa21.26■□□□□ 0.99
USP40-206ENST00000443711 NGLY1Q96IV0 654 aa21.26■□□□□ 0.99
USP40-206ENST00000443711 CFAP53Q96M91 514 aa21.26■□□□□ 0.99
USP40-206ENST00000443711 C8orf37Q96NL8 207 aa21.25■□□□□ 0.99
USP40-206ENST00000443711 RGPD5Q99666 1765 aa21.25■□□□□ 0.99
USP40-206ENST00000443711 CDK12Q9NYV4 1490 aaPredicted RBP21.25■□□□□ 0.99
USP40-206ENST00000443711 BLMP54132 1417 aaPredicted RBP21.24■□□□□ 0.99
USP40-206ENST00000443711 AXIN2Q9Y2T1 843 aa21.24■□□□□ 0.99
USP40-206ENST00000443711 LMO7Q8WWI1 1683 aa21.24■□□□□ 0.99
USP40-206ENST00000443711 INSRP06213 1382 aa21.23■□□□□ 0.99
USP40-206ENST00000443711 HSP90AB2PQ58FF8 381 aa21.23■□□□□ 0.99
USP40-206ENST00000443711 PLCH1Q4KWH8 1693 aa21.22■□□□□ 0.99
USP40-206ENST00000443711 CAMTA1Q9Y6Y1 1673 aa21.22■□□□□ 0.99
USP40-206ENST00000443711 BTG4Q9NY30 223 aa21.22■□□□□ 0.99
USP40-206ENST00000443711 MIER1Q8N108 512 aa21.21■□□□□ 0.99
USP40-206ENST00000443711 NWD2Q9ULI1 1742 aa21.21■□□□□ 0.99
USP40-206ENST00000443711 EVA1CP58658 441 aa21.2■□□□□ 0.98
USP40-206ENST00000443711 SLIT2O94813 1529 aa21.19■□□□□ 0.98
USP40-206ENST00000443711 FNBP4Q8N3X1 1017 aaPredicted RBP21.19■□□□□ 0.98
USP40-206ENST00000443711 ANKRD24Q8TF21 1146 aa21.19■□□□□ 0.98
USP40-206ENST00000443711 LTV1Q96GA3 475 aaPredicted RBP21.19■□□□□ 0.98
USP40-206ENST00000443711 DIAPH1O60610 1272 aaKnown RBP21.18■□□□□ 0.98
USP40-206ENST00000443711 CSB-PGBD3P0DP91 1061 aa21.17■□□□□ 0.98
USP40-206ENST00000443711 EIF4A2Q14240 407 aaKnown RBP21.17■□□□□ 0.98
USP40-206ENST00000443711 STRN4Q9NRL3 753 aa21.17■□□□□ 0.98
USP40-206ENST00000443711 AFF2P51816 1311 aa21.17■□□□□ 0.98
USP40-206ENST00000443711 COL5A2P05997 1499 aaPredicted RBP21.16■□□□□ 0.98
USP40-206ENST00000443711 ERBB3P21860 1342 aa21.16■□□□□ 0.98
USP40-206ENST00000443711 CCER2I3L3R5 266 aa21.16■□□□□ 0.98
USP40-206ENST00000443711 UNC5CLQ8IV45 518 aa21.16■□□□□ 0.98
USP40-206ENST00000443711 USP21Q9UK80 565 aa21.16■□□□□ 0.98
USP40-206ENST00000443711 COL3A1P02461 1466 aaPredicted RBP21.15■□□□□ 0.98
USP40-206ENST00000443711 WDR17Q8IZU2 1322 aa21.15■□□□□ 0.98
USP40-206ENST00000443711 NUDCQ9Y266 331 aa21.15■□□□□ 0.98
USP40-206ENST00000443711 NRAPQ86VF7 1730 aa21.15■□□□□ 0.98
USP40-206ENST00000443711 IL13P35225 146 aa21.14■□□□□ 0.97
USP40-206ENST00000443711 MRS2Q9HD23 443 aa21.14■□□□□ 0.97
USP40-206ENST00000443711 FAM208AQ9UK61 1670 aaKnown RBP21.14■□□□□ 0.97
USP40-206ENST00000443711 BCL9LQ86UU0 1499 aa21.13■□□□□ 0.97
USP40-206ENST00000443711 CCDC184Q52MB2 194 aa21.13■□□□□ 0.97
USP40-206ENST00000443711 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.12■□□□□ 0.97
USP40-206ENST00000443711 LARP1Q6PKG0 1096 aaKnown RBP21.12■□□□□ 0.97
USP40-206ENST00000443711 TOM1L2Q6ZVM7 507 aa21.12■□□□□ 0.97
USP40-206ENST00000443711 NLRP2Q9NX02 1062 aa21.12■□□□□ 0.97
USP40-206ENST00000443711 RGPD2P0DJD1 1756 aa21.11■□□□□ 0.97
USP40-206ENST00000443711 U2SURPO15042 1029 aaKnown RBP21.1■□□□□ 0.97
USP40-206ENST00000443711 EYA1Q99502 592 aa21.1■□□□□ 0.97
USP40-206ENST00000443711 CRB1P82279 1406 aa21.1■□□□□ 0.97
USP40-206ENST00000443711 VPS72Q15906 364 aa21.09■□□□□ 0.97
USP40-206ENST00000443711 NBPF6Q5VWK0 638 aa21.09■□□□□ 0.97
USP40-206ENST00000443711 ZNF772Q68DY9 489 aaPredicted RBP21.09■□□□□ 0.97
USP40-206ENST00000443711 NBPF4Q96M43 638 aa21.09■□□□□ 0.97
USP40-206ENST00000443711 CARD10Q9BWT7 1032 aa21.09■□□□□ 0.97
USP40-206ENST00000443711 CCDC9Q9Y3X0 531 aaKnown RBP21.09■□□□□ 0.97
USP40-206ENST00000443711 WDR43Q15061 677 aaKnown RBP eCLIP21.08■□□□□ 0.97
USP40-206ENST00000443711 TRPC5Q9UL62 973 aaPredicted RBP21.08■□□□□ 0.97
USP40-206ENST00000443711 IGSF1Q8N6C5 1336 aa21.07■□□□□ 0.96
USP40-206ENST00000443711 U2AF1L5P0DN76 240 aaPredicted RBP21.07■□□□□ 0.96
USP40-206ENST00000443711 U2AF1Q01081 240 aaKnown RBP eCLIP21.07■□□□□ 0.96
USP40-206ENST00000443711 PHF23Q9BUL5 403 aaPredicted RBP21.07■□□□□ 0.96
USP40-206ENST00000443711 RGPD1P0DJD0 1748 aa21.07■□□□□ 0.96
USP40-206ENST00000443711 SPATA31A5Q5VU36 1347 aa21.06■□□□□ 0.96
USP40-206ENST00000443711 SPATA31A7Q8IWB4 1347 aa21.06■□□□□ 0.96
USP40-206ENST00000443711 QTRT2Q9H974 415 aaKnown RBP21.06■□□□□ 0.96
USP40-206ENST00000443711 USHBP1Q8N6Y0 703 aa21.05■□□□□ 0.96
USP40-206ENST00000443711 PNISRQ8TF01 805 aaKnown RBP21.05■□□□□ 0.96
USP40-206ENST00000443711 SPATA31A1Q5TZJ5 1347 aa21.04■□□□□ 0.96
USP40-206ENST00000443711 ATRNO75882 1429 aa21.04■□□□□ 0.96
USP40-206ENST00000443711 SULT6B1Q6IMI4 303 aa21.04■□□□□ 0.96
USP40-206ENST00000443711 USP35Q9P2H5 1018 aa21.04■□□□□ 0.96
USP40-206ENST00000443711 TCP11L2Q8N4U5 519 aa21.03■□□□□ 0.96
USP40-206ENST00000443711 THRAP3Q9Y2W1 955 aaKnown RBP21.03■□□□□ 0.96
USP40-206ENST00000443711 NCAPD2Q15021 1401 aa21.03■□□□□ 0.96
USP40-206ENST00000443711 HMOX1P09601 288 aa21.02■□□□□ 0.96
USP40-206ENST00000443711 GJD4Q96KN9 370 aaPredicted RBP21.02■□□□□ 0.96
USP40-206ENST00000443711 FCHSD2O94868 740 aa21.01■□□□□ 0.95
USP40-206ENST00000443711 PNNQ9H307 717 aaKnown RBP21.01■□□□□ 0.95
USP40-206ENST00000443711 KDRP35968 1356 aa21■□□□□ 0.95
USP40-206ENST00000443711 AEBP1Q8IUX7 1158 aa21■□□□□ 0.95
USP40-206ENST00000443711 RAPGEF4Q8WZA2 1011 aa21■□□□□ 0.95
USP40-206ENST00000443711 RGS17Q9UGC6 210 aaPredicted RBP21■□□□□ 0.95
USP40-206ENST00000443711 ADAMTS8Q9UP79 889 aa21■□□□□ 0.95
USP40-206ENST00000443711 BARGINQ6ZT62 677 aa20.99■□□□□ 0.95
USP40-206ENST00000443711 FAM9BQ8IZU0 186 aa20.99■□□□□ 0.95
USP40-206ENST00000443711 IL2RBP14784 551 aa20.98■□□□□ 0.95
USP40-206ENST00000443711 TATP17735 454 aaPredicted RBP20.98■□□□□ 0.95
USP40-206ENST00000443711 ILDR2Q71H61 639 aa20.98■□□□□ 0.95
USP40-206ENST00000443711 CDCA7Q9BWT1 371 aaPredicted RBP20.98■□□□□ 0.95
USP40-206ENST00000443711 RSPH6AQ9H0K4 717 aa20.97■□□□□ 0.95
USP40-206ENST00000443711 GLI3P10071 1580 aa20.97■□□□□ 0.95
USP40-206ENST00000443711 RBM6P78332 1123 aaKnown RBP20.96■□□□□ 0.95
USP40-206ENST00000443711 WNK3Q9BYP7 1800 aa20.96■□□□□ 0.95
USP40-206ENST00000443711 NEFMP07197 916 aa20.95■□□□□ 0.94
USP40-206ENST00000443711 PRKAR2BP31323 418 aa20.95■□□□□ 0.94
USP40-206ENST00000443711 FAM98CQ17RN3 349 aaKnown RBP20.95■□□□□ 0.94
USP40-206ENST00000443711 RXRBP28702 533 aa20.94■□□□□ 0.94
USP40-206ENST00000443711 POTEAQ6S8J7 498 aa20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms