RNA–Protein interactions for RNA: ENST00000442708.5

USP39-205, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-205ENST00000442708 PEAK1Q9H792 1746 aa21.97■■□□□ 1.11
USP39-205ENST00000442708 RRS1Q15050 365 aaKnown RBP21.97■■□□□ 1.11
USP39-205ENST00000442708 NSD2O96028 1365 aa21.97■■□□□ 1.11
USP39-205ENST00000442708 COL5A2P05997 1499 aaPredicted RBP21.96■■□□□ 1.11
USP39-205ENST00000442708 ABCC6O95255 1503 aa21.96■■□□□ 1.11
USP39-205ENST00000442708 GLI3P10071 1580 aa21.96■■□□□ 1.11
USP39-205ENST00000442708 TRPC5Q9UL62 973 aaPredicted RBP21.96■■□□□ 1.11
USP39-205ENST00000442708 STRN4Q9NRL3 753 aa21.95■■□□□ 1.1
USP39-205ENST00000442708 TNNT2P45379 298 aaPredicted RBP21.94■■□□□ 1.1
USP39-205ENST00000442708 DDX10Q13206 875 aaKnown RBP21.94■■□□□ 1.1
USP39-205ENST00000442708 VPS72Q15906 364 aa21.94■■□□□ 1.1
USP39-205ENST00000442708 ZNF316A6NFI3 1004 aaPredicted RBP21.93■■□□□ 1.1
USP39-205ENST00000442708 CC2D1BQ5T0F9 858 aaKnown RBP21.93■■□□□ 1.1
USP39-205ENST00000442708 NPC1L1Q9UHC9 1359 aa21.92■■□□□ 1.1
USP39-205ENST00000442708 LARP1Q6PKG0 1096 aaKnown RBP21.92■■□□□ 1.1
USP39-205ENST00000442708 MORC1Q86VD1 984 aa21.92■■□□□ 1.1
USP39-205ENST00000442708 GJD4Q96KN9 370 aaPredicted RBP21.92■■□□□ 1.1
USP39-205ENST00000442708 EMILIN1Q9Y6C2 1016 aa21.92■■□□□ 1.1
USP39-205ENST00000442708 RXRBP28702 533 aa21.91■■□□□ 1.1
USP39-205ENST00000442708 HOXC9P31274 260 aa21.91■■□□□ 1.1
USP39-205ENST00000442708 CNGB1Q14028 1251 aaPredicted RBP21.91■■□□□ 1.1
USP39-205ENST00000442708 IP6K1Q92551 441 aa21.91■■□□□ 1.1
USP39-205ENST00000442708 SPATA31A5Q5VU36 1347 aa21.9■■□□□ 1.1
USP39-205ENST00000442708 SPATA31A7Q8IWB4 1347 aa21.9■■□□□ 1.1
USP39-205ENST00000442708 EVA1CP58658 441 aa21.9■■□□□ 1.1
USP39-205ENST00000442708 RBM6P78332 1123 aaKnown RBP21.9■■□□□ 1.1
USP39-205ENST00000442708 AMPHP49418 695 aa21.89■■□□□ 1.09
USP39-205ENST00000442708 POLKQ9UBT6 870 aa21.89■■□□□ 1.09
USP39-205ENST00000442708 CCDC9Q9Y3X0 531 aaKnown RBP21.89■■□□□ 1.09
USP39-205ENST00000442708 RTL1A6NKG5 1358 aa21.88■■□□□ 1.09
USP39-205ENST00000442708 BLMP54132 1417 aaPredicted RBP21.88■■□□□ 1.09
USP39-205ENST00000442708 RGPD2P0DJD1 1756 aa21.87■■□□□ 1.09
USP39-205ENST00000442708 SPATA31A1Q5TZJ5 1347 aa21.87■■□□□ 1.09
USP39-205ENST00000442708 WDR17Q8IZU2 1322 aa21.87■■□□□ 1.09
USP39-205ENST00000442708 ERBB3P21860 1342 aa21.86■■□□□ 1.09
USP39-205ENST00000442708 ANKRD24Q8TF21 1146 aa21.86■■□□□ 1.09
USP39-205ENST00000442708 RGS12O14924 1447 aa21.86■■□□□ 1.09
USP39-205ENST00000442708 CRB1P82279 1406 aa21.86■■□□□ 1.09
USP39-205ENST00000442708 HSP90AB2PQ58FF8 381 aa21.85■■□□□ 1.09
USP39-205ENST00000442708 FLT4P35916 1363 aa21.85■■□□□ 1.09
USP39-205ENST00000442708 SMG6Q86US8 1419 aaKnown RBP21.84■■□□□ 1.09
USP39-205ENST00000442708 PPM1GO15355 546 aaPredicted RBP21.84■■□□□ 1.09
USP39-205ENST00000442708 LTV1Q96GA3 475 aaPredicted RBP21.84■■□□□ 1.09
USP39-205ENST00000442708 USP35Q9P2H5 1018 aa21.84■■□□□ 1.09
USP39-205ENST00000442708 KIF24Q5T7B8 1368 aa21.84■■□□□ 1.09
USP39-205ENST00000442708 CDK12Q9NYV4 1490 aaPredicted RBP21.83■■□□□ 1.09
USP39-205ENST00000442708 INSRP06213 1382 aa21.83■■□□□ 1.08
USP39-205ENST00000442708 BRWD3Q6RI45 1802 aa21.83■■□□□ 1.08
USP39-205ENST00000442708 THSD7AQ9UPZ6 1657 aa21.82■■□□□ 1.08
USP39-205ENST00000442708 CSB-PGBD3P0DP91 1061 aa21.82■■□□□ 1.08
USP39-205ENST00000442708 FAM98CQ17RN3 349 aaKnown RBP21.82■■□□□ 1.08
USP39-205ENST00000442708 TOM1L2Q6ZVM7 507 aa21.82■■□□□ 1.08
USP39-205ENST00000442708 WNK3Q9BYP7 1800 aa21.82■■□□□ 1.08
USP39-205ENST00000442708 FAM208AQ9UK61 1670 aaKnown RBP21.82■■□□□ 1.08
USP39-205ENST00000442708 ONECUT3O60422 494 aaPredicted RBP21.81■■□□□ 1.08
USP39-205ENST00000442708 TCP11L2Q8N4U5 519 aa21.79■■□□□ 1.08
USP39-205ENST00000442708 CARD10Q9BWT7 1032 aa21.79■■□□□ 1.08
USP39-205ENST00000442708 NLRP2Q9NX02 1062 aa21.78■■□□□ 1.08
USP39-205ENST00000442708 MTHFSP49914 203 aa21.77■■□□□ 1.08
USP39-205ENST00000442708 BARGINQ6ZT62 677 aa21.77■■□□□ 1.08
USP39-205ENST00000442708 SEPT12Q8IYM1 358 aa21.77■■□□□ 1.08
USP39-205ENST00000442708 PARD3Q8TEW0 1356 aa21.76■■□□□ 1.07
USP39-205ENST00000442708 NBPF6Q5VWK0 638 aa21.76■■□□□ 1.07
USP39-205ENST00000442708 NBPF4Q96M43 638 aa21.76■■□□□ 1.07
USP39-205ENST00000442708 THRAP3Q9Y2W1 955 aaKnown RBP21.76■■□□□ 1.07
USP39-205ENST00000442708 EIF4A2Q14240 407 aaKnown RBP21.75■■□□□ 1.07
USP39-205ENST00000442708 UPF1Q92900 1129 aaKnown RBP eCLIP21.75■■□□□ 1.07
USP39-205ENST00000442708 PARP4Q9UKK3 1724 aaKnown RBP21.75■■□□□ 1.07
USP39-205ENST00000442708 DISP2A7MBM2 1401 aa21.74■■□□□ 1.07
USP39-205ENST00000442708 PPP2R1AP30153 589 aa21.73■■□□□ 1.07
USP39-205ENST00000442708 USHBP1Q8N6Y0 703 aa21.73■■□□□ 1.07
USP39-205ENST00000442708 LRRC37A3O60309 1634 aa21.73■■□□□ 1.07
USP39-205ENST00000442708 COL3A1P02461 1466 aaPredicted RBP21.71■■□□□ 1.07
USP39-205ENST00000442708 A0A0G2JS52 829 aa21.71■■□□□ 1.07
USP39-205ENST00000442708 MYT1Q01538 1121 aa21.71■■□□□ 1.07
USP39-205ENST00000442708 RGPD1P0DJD0 1748 aa21.7■■□□□ 1.06
USP39-205ENST00000442708 EYA1Q99502 592 aa21.7■■□□□ 1.06
USP39-205ENST00000442708 NCAPD2Q15021 1401 aa21.7■■□□□ 1.06
USP39-205ENST00000442708 IL13P35225 146 aa21.68■■□□□ 1.06
USP39-205ENST00000442708 MEGF6O75095 1541 aa21.67■■□□□ 1.06
USP39-205ENST00000442708 IL2RBP14784 551 aa21.66■■□□□ 1.06
USP39-205ENST00000442708 FAM182BQ5T319 152 aa21.66■■□□□ 1.06
USP39-205ENST00000442708 IGSF1Q8N6C5 1336 aa21.65■■□□□ 1.06
USP39-205ENST00000442708 RALBP1Q15311 655 aa21.65■■□□□ 1.06
USP39-205ENST00000442708 KRT27Q7Z3Y8 459 aa21.65■■□□□ 1.06
USP39-205ENST00000442708 SHANK3Q9BYB0 1731 aa21.64■■□□□ 1.06
USP39-205ENST00000442708 CDCA7Q9BWT1 371 aaPredicted RBP21.64■■□□□ 1.05
USP39-205ENST00000442708 PRKRIP1Q9H875 184 aaPredicted RBP21.63■■□□□ 1.05
USP39-205ENST00000442708 EP400Q96L91 3159 aa21.63■■□□□ 1.05
USP39-205ENST00000442708 DDB1Q16531 1140 aa21.62■■□□□ 1.05
USP39-205ENST00000442708 OVOS2A0A0G2JMS6 1433 aa21.62■■□□□ 1.05
USP39-205ENST00000442708 TNS2Q63HR2 1409 aa21.62■■□□□ 1.05
USP39-205ENST00000442708 DIAPH1O60610 1272 aaKnown RBP21.61■■□□□ 1.05
USP39-205ENST00000442708 AEBP1Q8IUX7 1158 aa21.61■■□□□ 1.05
USP39-205ENST00000442708 MARCH10Q8NA82 808 aaPredicted RBP21.6■■□□□ 1.05
USP39-205ENST00000442708 EXOC5O00471 708 aa21.59■■□□□ 1.05
USP39-205ENST00000442708 PDE3BQ13370 1112 aa21.59■■□□□ 1.05
USP39-205ENST00000442708 PKD1L3Q7Z443 1732 aa21.59■■□□□ 1.05
USP39-205ENST00000442708 MYBBP1AQ9BQG0 1328 aaKnown RBP21.58■■□□□ 1.05
USP39-205ENST00000442708 RAPGEF4Q8WZA2 1011 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms