RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 DIAPH1O60610 1272 aaKnown RBP27.69■■■□□ 2.02
CHD3-204ENST00000439235 HOXC9P31274 260 aa27.69■■■□□ 2.02
CHD3-204ENST00000439235 ZC3H6P61129 1189 aaKnown RBP27.69■■■□□ 2.02
CHD3-204ENST00000439235 NUDCQ9Y266 331 aa27.69■■■□□ 2.02
CHD3-204ENST00000439235 IP6K1Q92551 441 aa27.68■■■□□ 2.02
CHD3-204ENST00000439235 KIAA0232Q92628 1395 aa27.67■■■□□ 2.02
CHD3-204ENST00000439235 BLMP54132 1417 aaPredicted RBP27.67■■■□□ 2.02
CHD3-204ENST00000439235 FAM9BQ8IZU0 186 aa27.66■■■□□ 2.02
CHD3-204ENST00000439235 HSP90AB2PQ58FF8 381 aa27.65■■■□□ 2.02
CHD3-204ENST00000439235 PHF23Q9BUL5 403 aaPredicted RBP27.64■■■□□ 2.02
CHD3-204ENST00000439235 PRDM11Q9NQV5 511 aa27.64■■■□□ 2.02
CHD3-204ENST00000439235 IL13P35225 146 aa27.61■■■□□ 2.01
CHD3-204ENST00000439235 EIF4A2Q14240 407 aaKnown RBP27.61■■■□□ 2.01
CHD3-204ENST00000439235 SPATA31A6Q5VVP1 1343 aa27.61■■■□□ 2.01
CHD3-204ENST00000439235 U2SURPO15042 1029 aaKnown RBP27.6■■■□□ 2.01
CHD3-204ENST00000439235 COL18A1P39060 1754 aa27.58■■■□□ 2.01
CHD3-204ENST00000439235 CHRNA2Q15822 529 aa27.58■■■□□ 2.01
CHD3-204ENST00000439235 U2AF1L5P0DN76 240 aaPredicted RBP27.57■■■□□ 2
CHD3-204ENST00000439235 U2AF1Q01081 240 aaKnown RBP eCLIP27.57■■■□□ 2
CHD3-204ENST00000439235 LMO7Q8WWI1 1683 aa27.56■■■□□ 2
CHD3-204ENST00000439235 COL14A1Q05707 1796 aaKnown RBP27.56■■■□□ 2
CHD3-204ENST00000439235 ADAMTS8Q9UP79 889 aa27.56■■■□□ 2
CHD3-204ENST00000439235 NUTM2BA6NNL0 878 aaPredicted RBP27.55■■■□□ 2
CHD3-204ENST00000439235 NUTM2EB1AL46 878 aaPredicted RBP27.55■■■□□ 2
CHD3-204ENST00000439235 NUTM2AQ8IVF1 878 aaPredicted RBP27.55■■■□□ 2
CHD3-204ENST00000439235 ANKRD24Q8TF21 1146 aa27.54■■■□□ 2
CHD3-204ENST00000439235 LTV1Q96GA3 475 aaPredicted RBP27.54■■■□□ 2
CHD3-204ENST00000439235 AXIN2Q9Y2T1 843 aa27.54■■■□□ 2
CHD3-204ENST00000439235 ERBB3P21860 1342 aa27.53■■■□□ 2
CHD3-204ENST00000439235 RGPD1P0DJD0 1748 aa27.53■■■□□ 2
CHD3-204ENST00000439235 IGSF1Q8N6C5 1336 aa27.51■■□□□ 1.99
CHD3-204ENST00000439235 FAM83GA6ND36 823 aa27.51■■□□□ 1.99
CHD3-204ENST00000439235 PNNQ9H307 717 aaKnown RBP27.51■■□□□ 1.99
CHD3-204ENST00000439235 CAMTA1Q9Y6Y1 1673 aa27.5■■□□□ 1.99
CHD3-204ENST00000439235 ADAMTS2O95450 1211 aa27.5■■□□□ 1.99
CHD3-204ENST00000439235 FAM208AQ9UK61 1670 aaKnown RBP27.49■■□□□ 1.99
CHD3-204ENST00000439235 COL5A2P05997 1499 aaPredicted RBP27.49■■□□□ 1.99
CHD3-204ENST00000439235 FCHSD2O94868 740 aa27.48■■□□□ 1.99
CHD3-204ENST00000439235 EYA1Q99502 592 aa27.48■■□□□ 1.99
CHD3-204ENST00000439235 RGPD5Q99666 1765 aa27.48■■□□□ 1.99
CHD3-204ENST00000439235 CSB-PGBD3P0DP91 1061 aa27.47■■□□□ 1.99
CHD3-204ENST00000439235 LRP6O75581 1613 aa27.45■■□□□ 1.99
CHD3-204ENST00000439235 SULT6B1Q6IMI4 303 aa27.45■■□□□ 1.98
CHD3-204ENST00000439235 RUNDC1Q96C34 613 aa27.45■■□□□ 1.98
CHD3-204ENST00000439235 RSPH6AQ9H0K4 717 aa27.45■■□□□ 1.98
CHD3-204ENST00000439235 PLCH1Q4KWH8 1693 aa27.45■■□□□ 1.98
CHD3-204ENST00000439235 KDRP35968 1356 aa27.45■■□□□ 1.98
CHD3-204ENST00000439235 WDR17Q8IZU2 1322 aa27.44■■□□□ 1.98
CHD3-204ENST00000439235 NEFMP07197 916 aa27.44■■□□□ 1.98
CHD3-204ENST00000439235 HMOX1P09601 288 aa27.44■■□□□ 1.98
CHD3-204ENST00000439235 YTHDC1Q96MU7 727 aaKnown RBP27.44■■□□□ 1.98
CHD3-204ENST00000439235 BTG4Q9NY30 223 aa27.44■■□□□ 1.98
CHD3-204ENST00000439235 NCAPD2Q15021 1401 aa27.43■■□□□ 1.98
CHD3-204ENST00000439235 EVA1CP58658 441 aa27.43■■□□□ 1.98
CHD3-204ENST00000439235 PRKAR2BP31323 418 aa27.42■■□□□ 1.98
CHD3-204ENST00000439235 NBPF6Q5VWK0 638 aa27.42■■□□□ 1.98
CHD3-204ENST00000439235 CCDC146Q8IYE0 955 aa27.42■■□□□ 1.98
CHD3-204ENST00000439235 NBPF4Q96M43 638 aa27.42■■□□□ 1.98
CHD3-204ENST00000439235 MAPK8IP3Q9UPT6 1336 aa27.41■■□□□ 1.98
CHD3-204ENST00000439235 HNRNPUQ00839 825 aaKnown RBP eCLIP27.41■■□□□ 1.98
CHD3-204ENST00000439235 AEBP1Q8IUX7 1158 aa27.41■■□□□ 1.98
CHD3-204ENST00000439235 STRN4Q9NRL3 753 aa27.41■■□□□ 1.98
CHD3-204ENST00000439235 NLRP2Q9NX02 1062 aa27.41■■□□□ 1.98
CHD3-204ENST00000439235 NWD2Q9ULI1 1742 aa27.41■■□□□ 1.98
CHD3-204ENST00000439235 MEX3CQ5U5Q3 659 aaKnown RBP27.4■■□□□ 1.98
CHD3-204ENST00000439235 SLIT2O94813 1529 aa27.4■■□□□ 1.98
CHD3-204ENST00000439235 PLEKHF1Q96S99 279 aa27.39■■□□□ 1.98
CHD3-204ENST00000439235 TOM1L2Q6ZVM7 507 aa27.38■■□□□ 1.97
CHD3-204ENST00000439235 C8orf37Q96NL8 207 aa27.38■■□□□ 1.97
CHD3-204ENST00000439235 CRB1P82279 1406 aa27.37■■□□□ 1.97
CHD3-204ENST00000439235 NRAPQ86VF7 1730 aa27.37■■□□□ 1.97
CHD3-204ENST00000439235 USHBP1Q8N6Y0 703 aa27.37■■□□□ 1.97
CHD3-204ENST00000439235 RGPD2P0DJD1 1756 aa27.36■■□□□ 1.97
CHD3-204ENST00000439235 NGLY1Q96IV0 654 aa27.36■■□□□ 1.97
CHD3-204ENST00000439235 CARD10Q9BWT7 1032 aa27.35■■□□□ 1.97
CHD3-204ENST00000439235 LARP1Q6PKG0 1096 aaKnown RBP27.34■■□□□ 1.97
CHD3-204ENST00000439235 NGEFQ8N5V2 710 aa27.34■■□□□ 1.97
CHD3-204ENST00000439235 APAF1O14727 1248 aa27.33■■□□□ 1.97
CHD3-204ENST00000439235 PLEKHG2Q9H7P9 1386 aa27.33■■□□□ 1.97
CHD3-204ENST00000439235 FNBP4Q8N3X1 1017 aaPredicted RBP27.32■■□□□ 1.96
CHD3-204ENST00000439235 TCP11L2Q8N4U5 519 aa27.32■■□□□ 1.96
CHD3-204ENST00000439235 RAPGEF4Q8WZA2 1011 aa27.3■■□□□ 1.96
CHD3-204ENST00000439235 NCBP3Q53F19 620 aaKnown RBP27.29■■□□□ 1.96
CHD3-204ENST00000439235 UNC5CLQ8IV45 518 aa27.29■■□□□ 1.96
CHD3-204ENST00000439235 RGS17Q9UGC6 210 aaPredicted RBP27.29■■□□□ 1.96
CHD3-204ENST00000439235 ZBED9Q6R2W3 1325 aa27.29■■□□□ 1.96
CHD3-204ENST00000439235 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.28■■□□□ 1.96
CHD3-204ENST00000439235 PHACTR3Q96KR7 559 aa27.28■■□□□ 1.96
CHD3-204ENST00000439235 BCL9LQ86UU0 1499 aa27.27■■□□□ 1.96
CHD3-204ENST00000439235 TATP17735 454 aaPredicted RBP27.27■■□□□ 1.96
CHD3-204ENST00000439235 TMPOP42166 694 aaKnown RBP27.27■■□□□ 1.96
CHD3-204ENST00000439235 NFE2L2Q16236 605 aa27.27■■□□□ 1.96
CHD3-204ENST00000439235 GAS2L2Q8NHY3 880 aa27.26■■□□□ 1.95
CHD3-204ENST00000439235 USP21Q9UK80 565 aa27.26■■□□□ 1.95
CHD3-204ENST00000439235 MEGF6O75095 1541 aa27.25■■□□□ 1.95
CHD3-204ENST00000439235 AMOTQ4VCS5 1084 aa27.24■■□□□ 1.95
CHD3-204ENST00000439235 PLEKHO1Q53GL0 409 aaPredicted RBP27.24■■□□□ 1.95
CHD3-204ENST00000439235 RRP7AQ9Y3A4 280 aaKnown RBP27.24■■□□□ 1.95
CHD3-204ENST00000439235 PARP4Q9UKK3 1724 aaKnown RBP27.24■■□□□ 1.95
CHD3-204ENST00000439235 AFF2P51816 1311 aa27.23■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms