RNA–Protein interactions for RNA: ENST00000439008.1

LINC00399-201, long intergenic non-protein coding RNA 399, humanhuman

TSL 2 BASIC

Gene LINC00399, Length 414 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00399-201ENST00000439008 SPATA31A1Q5TZJ5 1347 aa18.49■□□□□ 0.55
LINC00399-201ENST00000439008 SEPT12Q8IYM1 358 aa18.49■□□□□ 0.55
LINC00399-201ENST00000439008 KCNH5Q8NCM2 988 aa18.49■□□□□ 0.55
LINC00399-201ENST00000439008 UPF1Q92900 1129 aaKnown RBP eCLIP18.49■□□□□ 0.55
LINC00399-201ENST00000439008 POLR3GLQ9BT43 218 aa18.49■□□□□ 0.55
LINC00399-201ENST00000439008 THSD7AQ9UPZ6 1657 aa18.48■□□□□ 0.55
LINC00399-201ENST00000439008 GGNBP2Q9H3C7 697 aa18.48■□□□□ 0.55
LINC00399-201ENST00000439008 KIF20BQ96Q89 1820 aa18.47■□□□□ 0.55
LINC00399-201ENST00000439008 NSD3Q9BZ95 1437 aa18.46■□□□□ 0.55
LINC00399-201ENST00000439008 EVA1CP58658 441 aa18.45■□□□□ 0.54
LINC00399-201ENST00000439008 USP35Q9P2H5 1018 aa18.45■□□□□ 0.54
LINC00399-201ENST00000439008 COG3Q96JB2 828 aa18.43■□□□□ 0.54
LINC00399-201ENST00000439008 KIF7Q2M1P5 1343 aa18.43■□□□□ 0.54
LINC00399-201ENST00000439008 CRB1P82279 1406 aa18.41■□□□□ 0.54
LINC00399-201ENST00000439008 ABCC6O95255 1503 aa18.41■□□□□ 0.54
LINC00399-201ENST00000439008 FAM182BQ5T319 152 aa18.41■□□□□ 0.54
LINC00399-201ENST00000439008 PANK3Q9H999 370 aa18.41■□□□□ 0.54
LINC00399-201ENST00000439008 MAP3K19Q56UN5 1328 aa18.41■□□□□ 0.54
LINC00399-201ENST00000439008 WDR17Q8IZU2 1322 aa18.41■□□□□ 0.54
LINC00399-201ENST00000439008 A0A0G2JS52 829 aa18.39■□□□□ 0.53
LINC00399-201ENST00000439008 MYT1Q01538 1121 aa18.39■□□□□ 0.53
LINC00399-201ENST00000439008 RRS1Q15050 365 aaKnown RBP18.39■□□□□ 0.53
LINC00399-201ENST00000439008 BARGINQ6ZT62 677 aa18.39■□□□□ 0.53
LINC00399-201ENST00000439008 KRT27Q7Z3Y8 459 aa18.39■□□□□ 0.53
LINC00399-201ENST00000439008 TCP11L2Q8N4U5 519 aa18.39■□□□□ 0.53
LINC00399-201ENST00000439008 PEAK1Q9H792 1746 aa18.39■□□□□ 0.53
LINC00399-201ENST00000439008 WNK3Q9BYP7 1800 aa18.38■□□□□ 0.53
LINC00399-201ENST00000439008 TOM1L2Q6ZVM7 507 aa18.37■□□□□ 0.53
LINC00399-201ENST00000439008 IP6K1Q92551 441 aa18.37■□□□□ 0.53
LINC00399-201ENST00000439008 ERBB3P21860 1342 aa18.37■□□□□ 0.53
LINC00399-201ENST00000439008 RGPD2P0DJD1 1756 aa18.36■□□□□ 0.53
LINC00399-201ENST00000439008 WASHC2AQ641Q2 1341 aa18.36■□□□□ 0.53
LINC00399-201ENST00000439008 PARP4Q9UKK3 1724 aaKnown RBP18.36■□□□□ 0.53
LINC00399-201ENST00000439008 HOXC9P31274 260 aa18.35■□□□□ 0.53
LINC00399-201ENST00000439008 ANKRD24Q8TF21 1146 aa18.35■□□□□ 0.53
LINC00399-201ENST00000439008 ANKRD26Q9UPS8 1709 aa18.35■□□□□ 0.53
LINC00399-201ENST00000439008 DISP2A7MBM2 1401 aa18.34■□□□□ 0.53
LINC00399-201ENST00000439008 CCDC7Q96M83 1385 aa18.34■□□□□ 0.53
LINC00399-201ENST00000439008 CGNL1Q0VF96 1302 aa18.34■□□□□ 0.53
LINC00399-201ENST00000439008 CARD10Q9BWT7 1032 aa18.34■□□□□ 0.53
LINC00399-201ENST00000439008 THRAP3Q9Y2W1 955 aaKnown RBP18.34■□□□□ 0.53
LINC00399-201ENST00000439008 LRRC37A3O60309 1634 aa18.34■□□□□ 0.53
LINC00399-201ENST00000439008 CSB-PGBD3P0DP91 1061 aa18.33■□□□□ 0.52
LINC00399-201ENST00000439008 MAP2P11137 1827 aaKnown RBP18.33■□□□□ 0.52
LINC00399-201ENST00000439008 BLMP54132 1417 aaPredicted RBP18.32■□□□□ 0.52
LINC00399-201ENST00000439008 LTV1Q96GA3 475 aaPredicted RBP18.32■□□□□ 0.52
LINC00399-201ENST00000439008 EMILIN1Q9Y6C2 1016 aa18.32■□□□□ 0.52
LINC00399-201ENST00000439008 PER1O15534 1290 aaPredicted RBP18.3■□□□□ 0.52
LINC00399-201ENST00000439008 AMPHP49418 695 aa18.3■□□□□ 0.52
LINC00399-201ENST00000439008 NLRP2Q9NX02 1062 aa18.3■□□□□ 0.52
LINC00399-201ENST00000439008 FAM208AQ9UK61 1670 aaKnown RBP18.3■□□□□ 0.52
LINC00399-201ENST00000439008 HSP90AB2PQ58FF8 381 aa18.29■□□□□ 0.52
LINC00399-201ENST00000439008 RTL1A6NKG5 1358 aa18.29■□□□□ 0.52
LINC00399-201ENST00000439008 TNNT2P45379 298 aaPredicted RBP18.28■□□□□ 0.52
LINC00399-201ENST00000439008 AMER1Q5JTC6 1135 aaPredicted RBP18.28■□□□□ 0.52
LINC00399-201ENST00000439008 POLKQ9UBT6 870 aa18.28■□□□□ 0.52
LINC00399-201ENST00000439008 TNS1Q9HBL0 1735 aaKnown RBP18.26■□□□□ 0.51
LINC00399-201ENST00000439008 NBPF6Q5VWK0 638 aa18.26■□□□□ 0.51
LINC00399-201ENST00000439008 DEFB132Q7Z7B7 95 aa18.26■□□□□ 0.51
LINC00399-201ENST00000439008 MARCH10Q8NA82 808 aaPredicted RBP18.26■□□□□ 0.51
LINC00399-201ENST00000439008 NBPF4Q96M43 638 aa18.26■□□□□ 0.51
LINC00399-201ENST00000439008 INSRP06213 1382 aa18.26■□□□□ 0.51
LINC00399-201ENST00000439008 PDE3BQ13370 1112 aa18.25■□□□□ 0.51
LINC00399-201ENST00000439008 DDB1Q16531 1140 aa18.25■□□□□ 0.51
LINC00399-201ENST00000439008 FLT4P35916 1363 aa18.25■□□□□ 0.51
LINC00399-201ENST00000439008 SBF2Q86WG5 1849 aa18.25■□□□□ 0.51
LINC00399-201ENST00000439008 USHBP1Q8N6Y0 703 aa18.24■□□□□ 0.51
LINC00399-201ENST00000439008 KNSTRNQ9Y448 316 aa18.24■□□□□ 0.51
LINC00399-201ENST00000439008 NSD2O96028 1365 aa18.23■□□□□ 0.51
LINC00399-201ENST00000439008 TRIM37O94972 964 aa18.23■□□□□ 0.51
LINC00399-201ENST00000439008 CCDC125Q86Z20 511 aa18.23■□□□□ 0.51
LINC00399-201ENST00000439008 KIF24Q5T7B8 1368 aa18.22■□□□□ 0.51
LINC00399-201ENST00000439008 PPM1GO15355 546 aaPredicted RBP18.22■□□□□ 0.51
LINC00399-201ENST00000439008 FAM196AQ6ZSG2 479 aa18.22■□□□□ 0.51
LINC00399-201ENST00000439008 PTF1AQ7RTS3 328 aa18.22■□□□□ 0.51
LINC00399-201ENST00000439008 CDCA7Q9BWT1 371 aaPredicted RBP18.22■□□□□ 0.51
LINC00399-201ENST00000439008 RGPD1P0DJD0 1748 aa18.22■□□□□ 0.51
LINC00399-201ENST00000439008 TNS2Q63HR2 1409 aa18.22■□□□□ 0.51
LINC00399-201ENST00000439008 IL2RBP14784 551 aa18.21■□□□□ 0.51
LINC00399-201ENST00000439008 MEGF6O75095 1541 aa18.21■□□□□ 0.51
LINC00399-201ENST00000439008 SHANK3Q9BYB0 1731 aa18.2■□□□□ 0.5
LINC00399-201ENST00000439008 EXOC5O00471 708 aa18.19■□□□□ 0.5
LINC00399-201ENST00000439008 SMG6Q86US8 1419 aaKnown RBP18.19■□□□□ 0.5
LINC00399-201ENST00000439008 MORC1Q86VD1 984 aa18.19■□□□□ 0.5
LINC00399-201ENST00000439008 OVOS2A0A0G2JMS6 1433 aa18.18■□□□□ 0.5
LINC00399-201ENST00000439008 CC2D1BQ5T0F9 858 aaKnown RBP18.18■□□□□ 0.5
LINC00399-201ENST00000439008 NCAPD2Q15021 1401 aa18.17■□□□□ 0.5
LINC00399-201ENST00000439008 EN1Q05925 392 aaPredicted RBP18.17■□□□□ 0.5
LINC00399-201ENST00000439008 EIF4A2Q14240 407 aaKnown RBP18.16■□□□□ 0.5
LINC00399-201ENST00000439008 EYA1Q99502 592 aa18.16■□□□□ 0.5
LINC00399-201ENST00000439008 BCL9O00512 1426 aa18.15■□□□□ 0.5
LINC00399-201ENST00000439008 CNGB1Q14028 1251 aaPredicted RBP18.15■□□□□ 0.5
LINC00399-201ENST00000439008 SF3B2Q13435 895 aaKnown RBP18.14■□□□□ 0.49
LINC00399-201ENST00000439008 NPC1L1Q9UHC9 1359 aa18.14■□□□□ 0.49
LINC00399-201ENST00000439008 KCNQ2O43526 872 aa18.13■□□□□ 0.49
LINC00399-201ENST00000439008 CAMKK2Q96RR4 588 aa18.13■□□□□ 0.49
LINC00399-201ENST00000439008 APBA3O96018 575 aa18.12■□□□□ 0.49
LINC00399-201ENST00000439008 BAG6P46379 1132 aa18.12■□□□□ 0.49
LINC00399-201ENST00000439008 EZH2Q15910 746 aaKnown RBP18.12■□□□□ 0.49
LINC00399-201ENST00000439008 KAT6BQ8WYB5 2073 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms