RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 OVOS2Q6IE36 1432 aa21.11■□□□□ 0.97
LIMS3-201ENST00000437679 BARGINQ6ZT62 677 aa21.1■□□□□ 0.97
LIMS3-201ENST00000437679 COG3Q96JB2 828 aa21.1■□□□□ 0.97
LIMS3-201ENST00000437679 POLR3GLQ9BT43 218 aa21.1■□□□□ 0.97
LIMS3-201ENST00000437679 AXIN2Q9Y2T1 843 aa21.1■□□□□ 0.97
LIMS3-201ENST00000437679 THSD7AQ9UPZ6 1657 aa21.09■□□□□ 0.97
LIMS3-201ENST00000437679 CCDC125Q86Z20 511 aa21.09■□□□□ 0.97
LIMS3-201ENST00000437679 THRAP3Q9Y2W1 955 aaKnown RBP21.09■□□□□ 0.97
LIMS3-201ENST00000437679 CRB1P82279 1406 aa21.09■□□□□ 0.97
LIMS3-201ENST00000437679 TOM1L2Q6ZVM7 507 aa21.08■□□□□ 0.97
LIMS3-201ENST00000437679 MYOM1P52179 1685 aa21.08■□□□□ 0.96
LIMS3-201ENST00000437679 ABCC6O95255 1503 aa21.08■□□□□ 0.96
LIMS3-201ENST00000437679 EP400Q96L91 3159 aa21.07■□□□□ 0.96
LIMS3-201ENST00000437679 WDR17Q8IZU2 1322 aa21.07■□□□□ 0.96
LIMS3-201ENST00000437679 CSB-PGBD3P0DP91 1061 aa21.07■□□□□ 0.96
LIMS3-201ENST00000437679 RGPD5Q99666 1765 aa21.07■□□□□ 0.96
LIMS3-201ENST00000437679 LTN1O94822 1766 aa21.06■□□□□ 0.96
LIMS3-201ENST00000437679 FYB1O15117 783 aa21.04■□□□□ 0.96
LIMS3-201ENST00000437679 GGNBP2Q9H3C7 697 aa21.04■□□□□ 0.96
LIMS3-201ENST00000437679 BLMP54132 1417 aaPredicted RBP21.04■□□□□ 0.96
LIMS3-201ENST00000437679 PDE3BQ13370 1112 aa21.02■□□□□ 0.96
LIMS3-201ENST00000437679 SF3B2Q13435 895 aaKnown RBP21.02■□□□□ 0.96
LIMS3-201ENST00000437679 CARD14Q9BXL6 1004 aa21.02■□□□□ 0.96
LIMS3-201ENST00000437679 NSD3Q9BZ95 1437 aa21.02■□□□□ 0.96
LIMS3-201ENST00000437679 KIF20BQ96Q89 1820 aa21.01■□□□□ 0.95
LIMS3-201ENST00000437679 CARD10Q9BWT7 1032 aa21.01■□□□□ 0.95
LIMS3-201ENST00000437679 FAM182BQ5T319 152 aa21■□□□□ 0.95
LIMS3-201ENST00000437679 IP6K1Q92551 441 aa20.99■□□□□ 0.95
LIMS3-201ENST00000437679 ERBB3P21860 1342 aa20.99■□□□□ 0.95
LIMS3-201ENST00000437679 AMPHP49418 695 aa20.98■□□□□ 0.95
LIMS3-201ENST00000437679 ANKRD24Q8TF21 1146 aa20.98■□□□□ 0.95
LIMS3-201ENST00000437679 CDCA7Q9BWT1 371 aaPredicted RBP20.98■□□□□ 0.95
LIMS3-201ENST00000437679 MAP3K19Q56UN5 1328 aa20.98■□□□□ 0.95
LIMS3-201ENST00000437679 PARP4Q9UKK3 1724 aaKnown RBP20.98■□□□□ 0.95
LIMS3-201ENST00000437679 CCDC7Q96M83 1385 aa20.97■□□□□ 0.95
LIMS3-201ENST00000437679 FAM196AQ6ZSG2 479 aa20.97■□□□□ 0.95
LIMS3-201ENST00000437679 NLRP2Q9NX02 1062 aa20.97■□□□□ 0.95
LIMS3-201ENST00000437679 CGNL1Q0VF96 1302 aa20.97■□□□□ 0.95
LIMS3-201ENST00000437679 FBLN1P23142 703 aa20.96■□□□□ 0.95
LIMS3-201ENST00000437679 C11orf95C9JLR9 678 aaPredicted RBP20.95■□□□□ 0.94
LIMS3-201ENST00000437679 DDB1Q16531 1140 aa20.95■□□□□ 0.94
LIMS3-201ENST00000437679 WNK3Q9BYP7 1800 aa20.94■□□□□ 0.94
LIMS3-201ENST00000437679 HOXC9P31274 260 aa20.94■□□□□ 0.94
LIMS3-201ENST00000437679 RRS1Q15050 365 aaKnown RBP20.94■□□□□ 0.94
LIMS3-201ENST00000437679 PANK3Q9H999 370 aa20.94■□□□□ 0.94
LIMS3-201ENST00000437679 LTV1Q96GA3 475 aaPredicted RBP20.93■□□□□ 0.94
LIMS3-201ENST00000437679 RTL1A6NKG5 1358 aa20.93■□□□□ 0.94
LIMS3-201ENST00000437679 RGPD1P0DJD0 1748 aa20.92■□□□□ 0.94
LIMS3-201ENST00000437679 BAG6P46379 1132 aa20.92■□□□□ 0.94
LIMS3-201ENST00000437679 DEFB132Q7Z7B7 95 aa20.92■□□□□ 0.94
LIMS3-201ENST00000437679 LRRC37A3O60309 1634 aa20.92■□□□□ 0.94
LIMS3-201ENST00000437679 FAM208AQ9UK61 1670 aaKnown RBP20.9■□□□□ 0.94
LIMS3-201ENST00000437679 DISP2A7MBM2 1401 aa20.9■□□□□ 0.94
LIMS3-201ENST00000437679 KIF7Q2M1P5 1343 aa20.89■□□□□ 0.93
LIMS3-201ENST00000437679 EXOC5O00471 708 aa20.89■□□□□ 0.93
LIMS3-201ENST00000437679 TRIM37O94972 964 aa20.89■□□□□ 0.93
LIMS3-201ENST00000437679 OVOS2A0A0G2JMS6 1433 aa20.88■□□□□ 0.93
LIMS3-201ENST00000437679 IL2RBP14784 551 aa20.88■□□□□ 0.93
LIMS3-201ENST00000437679 KIF24Q5T7B8 1368 aa20.87■□□□□ 0.93
LIMS3-201ENST00000437679 SMG6Q86US8 1419 aaKnown RBP20.87■□□□□ 0.93
LIMS3-201ENST00000437679 FLT4P35916 1363 aa20.86■□□□□ 0.93
LIMS3-201ENST00000437679 TNS1Q9HBL0 1735 aaKnown RBP20.85■□□□□ 0.93
LIMS3-201ENST00000437679 KNSTRNQ9Y448 316 aa20.85■□□□□ 0.93
LIMS3-201ENST00000437679 TNS2Q63HR2 1409 aa20.85■□□□□ 0.93
LIMS3-201ENST00000437679 INSRP06213 1382 aa20.85■□□□□ 0.93
LIMS3-201ENST00000437679 ANKRD26Q9UPS8 1709 aa20.84■□□□□ 0.93
LIMS3-201ENST00000437679 EN1Q05925 392 aaPredicted RBP20.84■□□□□ 0.93
LIMS3-201ENST00000437679 HSP90AB2PQ58FF8 381 aa20.84■□□□□ 0.93
LIMS3-201ENST00000437679 MARCH10Q8NA82 808 aaPredicted RBP20.84■□□□□ 0.93
LIMS3-201ENST00000437679 EMILIN1Q9Y6C2 1016 aa20.84■□□□□ 0.93
LIMS3-201ENST00000437679 NSD2O96028 1365 aa20.84■□□□□ 0.93
LIMS3-201ENST00000437679 PPM1GO15355 546 aaPredicted RBP20.83■□□□□ 0.93
LIMS3-201ENST00000437679 APBA3O96018 575 aa20.83■□□□□ 0.93
LIMS3-201ENST00000437679 PEAK1Q9H792 1746 aa20.83■□□□□ 0.92
LIMS3-201ENST00000437679 MAP2P11137 1827 aaKnown RBP20.83■□□□□ 0.92
LIMS3-201ENST00000437679 RGPD2P0DJD1 1756 aa20.82■□□□□ 0.92
LIMS3-201ENST00000437679 TNNT2P45379 298 aaPredicted RBP20.81■□□□□ 0.92
LIMS3-201ENST00000437679 BCL9O00512 1426 aa20.8■□□□□ 0.92
LIMS3-201ENST00000437679 SBF2Q86WG5 1849 aa20.79■□□□□ 0.92
LIMS3-201ENST00000437679 NBPF6Q5VWK0 638 aa20.79■□□□□ 0.92
LIMS3-201ENST00000437679 MORC1Q86VD1 984 aa20.79■□□□□ 0.92
LIMS3-201ENST00000437679 NBPF4Q96M43 638 aa20.79■□□□□ 0.92
LIMS3-201ENST00000437679 POLKQ9UBT6 870 aa20.79■□□□□ 0.92
LIMS3-201ENST00000437679 WASHC2AQ641Q2 1341 aa20.78■□□□□ 0.92
LIMS3-201ENST00000437679 PARD3Q8TEW0 1356 aa20.77■□□□□ 0.92
LIMS3-201ENST00000437679 EZH2Q15910 746 aaKnown RBP20.77■□□□□ 0.92
LIMS3-201ENST00000437679 USHBP1Q8N6Y0 703 aa20.77■□□□□ 0.92
LIMS3-201ENST00000437679 BCL11BQ9C0K0 894 aaPredicted RBP20.77■□□□□ 0.92
LIMS3-201ENST00000437679 RAPGEF4Q8WZA2 1011 aa20.76■□□□□ 0.91
LIMS3-201ENST00000437679 CAMKK2Q96RR4 588 aa20.76■□□□□ 0.91
LIMS3-201ENST00000437679 KAT6BQ8WYB5 2073 aa20.74■□□□□ 0.91
LIMS3-201ENST00000437679 AMER1Q5JTC6 1135 aaPredicted RBP20.74■□□□□ 0.91
LIMS3-201ENST00000437679 ZCRB1Q8TBF4 217 aaKnown RBP20.74■□□□□ 0.91
LIMS3-201ENST00000437679 DDX54Q8TDD1 881 aaKnown RBP20.74■□□□□ 0.91
LIMS3-201ENST00000437679 TATP17735 454 aaPredicted RBP20.73■□□□□ 0.91
LIMS3-201ENST00000437679 MEGF6O75095 1541 aa20.73■□□□□ 0.91
LIMS3-201ENST00000437679 PER1O15534 1290 aaPredicted RBP20.71■□□□□ 0.91
LIMS3-201ENST00000437679 ACSBG1Q96GR2 724 aa20.71■□□□□ 0.91
LIMS3-201ENST00000437679 PLSCR1O15162 318 aa20.7■□□□□ 0.9
LIMS3-201ENST00000437679 PTF1AQ7RTS3 328 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms