RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 ATP1A2P50993 1020 aa10.36□□□□□ -0.75
USP54-206ENST00000433394 NBPF20Q3BBV1 942 aa10.36□□□□□ -0.75
USP54-206ENST00000433394 SH3BP5LQ7L8J4 393 aa10.36□□□□□ -0.75
USP54-206ENST00000433394 CCDC125Q86Z20 511 aa10.36□□□□□ -0.75
USP54-206ENST00000433394 DEPDC4Q8N2C3 294 aa10.36□□□□□ -0.75
USP54-206ENST00000433394 ZNF516Q92618 1163 aa10.36□□□□□ -0.75
USP54-206ENST00000433394 TRIM52Q96A61 297 aa10.36□□□□□ -0.75
USP54-206ENST00000433394 CDV3Q9UKY7 258 aaKnown RBP10.36□□□□□ -0.75
USP54-206ENST00000433394 FCF1Q9Y324 198 aaKnown RBP10.36□□□□□ -0.75
USP54-206ENST00000433394 S1PR4O95977 384 aa10.35□□□□□ -0.75
USP54-206ENST00000433394 NCOA4Q13772 614 aa10.35□□□□□ -0.75
USP54-206ENST00000433394 KANK4Q5T7N3 995 aaPredicted RBP10.35□□□□□ -0.75
USP54-206ENST00000433394 SIRT1Q96EB6 747 aa10.35□□□□□ -0.75
USP54-206ENST00000433394 GZF1Q9H116 711 aaPredicted RBP10.35□□□□□ -0.75
USP54-206ENST00000433394 PLA2G2EQ9NZK7 142 aa10.35□□□□□ -0.75
USP54-206ENST00000433394 NOVA2Q9UNW9 492 aaKnown RBP10.35□□□□□ -0.75
USP54-206ENST00000433394 NOD1Q9Y239 953 aa10.35□□□□□ -0.75
USP54-206ENST00000433394 PTCRAQ6ISU1 281 aaPredicted RBP10.34□□□□□ -0.75
USP54-206ENST00000433394 ZNF511Q8NB15 262 aa10.34□□□□□ -0.75
USP54-206ENST00000433394 BAP1Q92560 729 aa10.34□□□□□ -0.75
USP54-206ENST00000433394 DOLKQ9UPQ8 538 aa10.34□□□□□ -0.75
USP54-206ENST00000433394 LINC01559Q495D7 138 aa10.33□□□□□ -0.76
USP54-206ENST00000433394 FAM174AQ8TBP5 190 aa10.33□□□□□ -0.76
USP54-206ENST00000433394 FAM200AQ8TCP9 573 aa10.33□□□□□ -0.76
USP54-206ENST00000433394 USP17L15C9J2P7 530 aa10.32□□□□□ -0.76
USP54-206ENST00000433394 USP17L10C9JJH3 530 aa10.32□□□□□ -0.76
USP54-206ENST00000433394 USP17L13C9JLJ4 530 aa10.32□□□□□ -0.76
USP54-206ENST00000433394 USP17L12C9JPN9 530 aa10.32□□□□□ -0.76
USP54-206ENST00000433394 USP17L11C9JVI0 530 aa10.32□□□□□ -0.76
USP54-206ENST00000433394 USP17L21D6R901 530 aa10.32□□□□□ -0.76
USP54-206ENST00000433394 USP17L18D6R9N7 530 aa10.32□□□□□ -0.76
USP54-206ENST00000433394 USP17L22D6RA61 530 aa10.32□□□□□ -0.76
USP54-206ENST00000433394 USP17L17D6RBQ6 530 aa10.32□□□□□ -0.76
USP54-206ENST00000433394 USP17L19D6RCP7 530 aa10.32□□□□□ -0.76
USP54-206ENST00000433394 USP17L20D6RJB6 530 aa10.32□□□□□ -0.76
USP54-206ENST00000433394 KCNC4Q03721 635 aa10.32□□□□□ -0.76
USP54-206ENST00000433394 USP17L24Q0WX57 530 aa10.32□□□□□ -0.76
USP54-206ENST00000433394 ESF1Q9H501 851 aaKnown RBP10.32□□□□□ -0.76
USP54-206ENST00000433394 OCSTAMPQ9BR26 566 aa10.31□□□□□ -0.76
USP54-206ENST00000433394 ERFEQ4G0M1 354 aa10.3□□□□□ -0.76
USP54-206ENST00000433394 SH3RF1Q7Z6J0 888 aa10.3□□□□□ -0.76
USP54-206ENST00000433394 CDCA7Q9BWT1 371 aaPredicted RBP10.3□□□□□ -0.76
USP54-206ENST00000433394 TMEM88BA6NKF7 163 aa10.29□□□□□ -0.76
USP54-206ENST00000433394 OXLD1Q5BKU9 147 aa10.29□□□□□ -0.76
USP54-206ENST00000433394 SEPT12Q8IYM1 358 aa10.29□□□□□ -0.76
USP54-206ENST00000433394 PHTF2Q8N3S3 785 aa10.29□□□□□ -0.76
USP54-206ENST00000433394 TMEM164Q5U3C3 297 aa10.28□□□□□ -0.76
USP54-206ENST00000433394 NPM2Q86SE8 214 aaKnown RBP10.28□□□□□ -0.76
USP54-206ENST00000433394 OGFOD1Q8N543 542 aa10.28□□□□□ -0.76
USP54-206ENST00000433394 NKX2-3Q8TAU0 364 aa10.28□□□□□ -0.76
USP54-206ENST00000433394 CCER1Q8TC90 406 aaPredicted RBP10.28□□□□□ -0.76
USP54-206ENST00000433394 FOXJ1Q92949 421 aa10.28□□□□□ -0.76
USP54-206ENST00000433394 DNAAF2Q9NVR5 837 aaKnown RBP10.28□□□□□ -0.76
USP54-206ENST00000433394 PSME1Q06323 249 aa10.27□□□□□ -0.77
USP54-206ENST00000433394 USP4Q13107 963 aa10.27□□□□□ -0.77
USP54-206ENST00000433394 ANKMY2Q8IV38 441 aa10.27□□□□□ -0.77
USP54-206ENST00000433394 MYCP01106 439 aaPredicted RBP10.26□□□□□ -0.77
USP54-206ENST00000433394 PTK7Q13308 1070 aa10.26□□□□□ -0.77
USP54-206ENST00000433394 CRTC2Q53ET0 693 aaPredicted RBP10.26□□□□□ -0.77
USP54-206ENST00000433394 LARGE2Q8N3Y3 721 aa10.26□□□□□ -0.77
USP54-206ENST00000433394 STK32AQ8WU08 396 aa10.26□□□□□ -0.77
USP54-206ENST00000433394 CHIC2Q9UKJ5 165 aa10.26□□□□□ -0.77
USP54-206ENST00000433394 MTMR7Q9Y216 660 aa10.26□□□□□ -0.77
USP54-206ENST00000433394 GIGYF1O75420 1035 aaPredicted RBP10.25□□□□□ -0.77
USP54-206ENST00000433394 ANKLE1Q8NAG6 615 aa10.25□□□□□ -0.77
USP54-206ENST00000433394 ZNF594Q96JF6 807 aaPredicted RBP10.25□□□□□ -0.77
USP54-206ENST00000433394 ZMIZ1Q9ULJ6 1067 aa10.25□□□□□ -0.77
USP54-206ENST00000433394 IVNS1ABPQ9Y6Y0 642 aa10.25□□□□□ -0.77
USP54-206ENST00000433394 CARNS1A5YM72 827 aa10.24□□□□□ -0.77
USP54-206ENST00000433394 VARSP26640 1264 aaKnown RBP10.24□□□□□ -0.77
USP54-206ENST00000433394 WNT7BP56706 349 aa10.24□□□□□ -0.77
USP54-206ENST00000433394 SWI5Q1ZZU3 235 aa10.24□□□□□ -0.77
USP54-206ENST00000433394 TRAF7Q6Q0C0 670 aa10.24□□□□□ -0.77
USP54-206ENST00000433394 TRMT44Q8IYL2 757 aaKnown RBP10.24□□□□□ -0.77
USP54-206ENST00000433394 PCDHB11Q9Y5F2 797 aa10.24□□□□□ -0.77
USP54-206ENST00000433394 MFAP1P55081 439 aaKnown RBP10.23□□□□□ -0.77
USP54-206ENST00000433394 SH3BP2P78314 561 aa10.23□□□□□ -0.77
USP54-206ENST00000433394 GTF2IP78347 998 aa10.23□□□□□ -0.77
USP54-206ENST00000433394 TRIM32Q13049 653 aa10.23□□□□□ -0.77
USP54-206ENST00000433394 CD2BP2O95400 341 aaKnown RBP10.22□□□□□ -0.77
USP54-206ENST00000433394 DPYDQ12882 1025 aa10.22□□□□□ -0.77
USP54-206ENST00000433394 C1QTNF2Q9BXJ5 285 aa10.22□□□□□ -0.77
USP54-206ENST00000433394 ARID4AP29374 1257 aaPredicted RBP10.21□□□□□ -0.77
USP54-206ENST00000433394 SEC13P55735 322 aa10.21□□□□□ -0.77
USP54-206ENST00000433394 VASH1Q7L8A9 365 aaPredicted RBP10.21□□□□□ -0.77
USP54-206ENST00000433394 CCDC85AQ96PX6 553 aaPredicted RBP10.21□□□□□ -0.77
USP54-206ENST00000433394 KCTD15Q96SI1 283 aaPredicted RBP10.21□□□□□ -0.77
USP54-206ENST00000433394 RNF223E7ERA6 249 aa10.2□□□□□ -0.78
USP54-206ENST00000433394 ITGBL1O95965 494 aaPredicted RBP10.2□□□□□ -0.78
USP54-206ENST00000433394 RPIAP49247 311 aa10.2□□□□□ -0.78
USP54-206ENST00000433394 RAB15P59190 212 aa10.2□□□□□ -0.78
USP54-206ENST00000433394 CCDC27Q2M243 656 aa10.2□□□□□ -0.78
USP54-206ENST00000433394 EHBP1Q8NDI1 1231 aa10.2□□□□□ -0.78
USP54-206ENST00000433394 CLP1Q92989 425 aaKnown RBP10.2□□□□□ -0.78
USP54-206ENST00000433394 GNEQ9Y223 722 aaKnown RBP10.2□□□□□ -0.78
USP54-206ENST00000433394 ESPNB1AK53 854 aa10.19□□□□□ -0.78
USP54-206ENST00000433394 PPEF1O14829 653 aaPredicted RBP10.19□□□□□ -0.78
USP54-206ENST00000433394 C4orf48Q5BLP8 95 aa10.19□□□□□ -0.78
USP54-206ENST00000433394 CCDC102BQ68D86 513 aa10.19□□□□□ -0.78
USP54-206ENST00000433394 SIX5Q8N196 739 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms