RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 SPATA31A5Q5VU36 1347 aa25.72■■□□□ 1.71
SHH-202ENST00000430104 SPATA31A7Q8IWB4 1347 aa25.72■■□□□ 1.71
SHH-202ENST00000430104 A0A0G2JS52 829 aa25.72■■□□□ 1.71
SHH-202ENST00000430104 FBLN1P23142 703 aa25.72■■□□□ 1.71
SHH-202ENST00000430104 MYT1Q01538 1121 aa25.72■■□□□ 1.71
SHH-202ENST00000430104 LARP1Q6PKG0 1096 aaKnown RBP25.72■■□□□ 1.71
SHH-202ENST00000430104 AXIN2Q9Y2T1 843 aa25.72■■□□□ 1.71
SHH-202ENST00000430104 COL5A2P05997 1499 aaPredicted RBP25.71■■□□□ 1.71
SHH-202ENST00000430104 FAM98CQ17RN3 349 aaKnown RBP25.7■■□□□ 1.7
SHH-202ENST00000430104 CGNL1Q0VF96 1302 aa25.68■■□□□ 1.7
SHH-202ENST00000430104 SPATA31A1Q5TZJ5 1347 aa25.68■■□□□ 1.7
SHH-202ENST00000430104 CCDC7Q96M83 1385 aa25.68■■□□□ 1.7
SHH-202ENST00000430104 BRWD3Q6RI45 1802 aa25.67■■□□□ 1.7
SHH-202ENST00000430104 CSB-PGBD3P0DP91 1061 aa25.67■■□□□ 1.7
SHH-202ENST00000430104 SEPT12Q8IYM1 358 aa25.67■■□□□ 1.7
SHH-202ENST00000430104 WASHC2AQ641Q2 1341 aa25.66■■□□□ 1.7
SHH-202ENST00000430104 TOM1L2Q6ZVM7 507 aa25.65■■□□□ 1.7
SHH-202ENST00000430104 RRS1Q15050 365 aaKnown RBP25.64■■□□□ 1.7
SHH-202ENST00000430104 MAP3K19Q56UN5 1328 aa25.63■■□□□ 1.69
SHH-202ENST00000430104 ONECUT3O60422 494 aaPredicted RBP25.63■■□□□ 1.69
SHH-202ENST00000430104 AMPHP49418 695 aa25.63■■□□□ 1.69
SHH-202ENST00000430104 CRB1P82279 1406 aa25.63■■□□□ 1.69
SHH-202ENST00000430104 ANKRD26Q9UPS8 1709 aa25.62■■□□□ 1.69
SHH-202ENST00000430104 ABCC6O95255 1503 aa25.62■■□□□ 1.69
SHH-202ENST00000430104 WDR17Q8IZU2 1322 aa25.62■■□□□ 1.69
SHH-202ENST00000430104 TCP11L2Q8N4U5 519 aa25.61■■□□□ 1.69
SHH-202ENST00000430104 KNSTRNQ9Y448 316 aa25.61■■□□□ 1.69
SHH-202ENST00000430104 ZEB1P37275 1124 aaPredicted RBP25.6■■□□□ 1.69
SHH-202ENST00000430104 IP6K1Q92551 441 aa25.6■■□□□ 1.69
SHH-202ENST00000430104 LTV1Q96GA3 475 aaPredicted RBP25.6■■□□□ 1.69
SHH-202ENST00000430104 TNNT2P45379 298 aaPredicted RBP25.59■■□□□ 1.69
SHH-202ENST00000430104 ANKRD24Q8TF21 1146 aa25.59■■□□□ 1.69
SHH-202ENST00000430104 HOXC9P31274 260 aa25.58■■□□□ 1.69
SHH-202ENST00000430104 MAP2P11137 1827 aaKnown RBP25.57■■□□□ 1.68
SHH-202ENST00000430104 THSD7AQ9UPZ6 1657 aa25.57■■□□□ 1.68
SHH-202ENST00000430104 BARGINQ6ZT62 677 aa25.56■■□□□ 1.68
SHH-202ENST00000430104 KRT27Q7Z3Y8 459 aa25.56■■□□□ 1.68
SHH-202ENST00000430104 NLRP2Q9NX02 1062 aa25.56■■□□□ 1.68
SHH-202ENST00000430104 THRAP3Q9Y2W1 955 aaKnown RBP25.56■■□□□ 1.68
SHH-202ENST00000430104 BLMP54132 1417 aaPredicted RBP25.55■■□□□ 1.68
SHH-202ENST00000430104 PPM1GO15355 546 aaPredicted RBP25.55■■□□□ 1.68
SHH-202ENST00000430104 ERBB3P21860 1342 aa25.55■■□□□ 1.68
SHH-202ENST00000430104 CNGB1Q14028 1251 aaPredicted RBP25.53■■□□□ 1.68
SHH-202ENST00000430104 MORC1Q86VD1 984 aa25.53■■□□□ 1.68
SHH-202ENST00000430104 UPF1Q92900 1129 aaKnown RBP eCLIP25.53■■□□□ 1.68
SHH-202ENST00000430104 CARD10Q9BWT7 1032 aa25.53■■□□□ 1.68
SHH-202ENST00000430104 EMILIN1Q9Y6C2 1016 aa25.53■■□□□ 1.68
SHH-202ENST00000430104 PEAK1Q9H792 1746 aa25.53■■□□□ 1.68
SHH-202ENST00000430104 NSD2O96028 1365 aa25.52■■□□□ 1.68
SHH-202ENST00000430104 RGPD2P0DJD1 1756 aa25.51■■□□□ 1.67
SHH-202ENST00000430104 WNK3Q9BYP7 1800 aa25.51■■□□□ 1.67
SHH-202ENST00000430104 FAM182BQ5T319 152 aa25.51■■□□□ 1.67
SHH-202ENST00000430104 RTL1A6NKG5 1358 aa25.51■■□□□ 1.67
SHH-202ENST00000430104 PER1O15534 1290 aaPredicted RBP25.5■■□□□ 1.67
SHH-202ENST00000430104 HSP90AB2PQ58FF8 381 aa25.49■■□□□ 1.67
SHH-202ENST00000430104 AMER1Q5JTC6 1135 aaPredicted RBP25.49■■□□□ 1.67
SHH-202ENST00000430104 PDE3BQ13370 1112 aa25.48■■□□□ 1.67
SHH-202ENST00000430104 CC2D1BQ5T0F9 858 aaKnown RBP25.48■■□□□ 1.67
SHH-202ENST00000430104 PARP4Q9UKK3 1724 aaKnown RBP25.48■■□□□ 1.67
SHH-202ENST00000430104 FAM208AQ9UK61 1670 aaKnown RBP25.48■■□□□ 1.67
SHH-202ENST00000430104 FLT4P35916 1363 aa25.47■■□□□ 1.67
SHH-202ENST00000430104 POLKQ9UBT6 870 aa25.47■■□□□ 1.67
SHH-202ENST00000430104 INSRP06213 1382 aa25.44■■□□□ 1.66
SHH-202ENST00000430104 DDB1Q16531 1140 aa25.44■■□□□ 1.66
SHH-202ENST00000430104 SMG6Q86US8 1419 aaKnown RBP25.44■■□□□ 1.66
SHH-202ENST00000430104 LRRC37A3O60309 1634 aa25.44■■□□□ 1.66
SHH-202ENST00000430104 KIF24Q5T7B8 1368 aa25.44■■□□□ 1.66
SHH-202ENST00000430104 CDCA7Q9BWT1 371 aaPredicted RBP25.43■■□□□ 1.66
SHH-202ENST00000430104 USHBP1Q8N6Y0 703 aa25.41■■□□□ 1.66
SHH-202ENST00000430104 DISP2A7MBM2 1401 aa25.4■■□□□ 1.66
SHH-202ENST00000430104 IL2RBP14784 551 aa25.4■■□□□ 1.66
SHH-202ENST00000430104 NBPF6Q5VWK0 638 aa25.4■■□□□ 1.66
SHH-202ENST00000430104 NBPF4Q96M43 638 aa25.4■■□□□ 1.66
SHH-202ENST00000430104 EXOC5O00471 708 aa25.39■■□□□ 1.66
SHH-202ENST00000430104 FAM196AQ6ZSG2 479 aa25.36■■□□□ 1.65
SHH-202ENST00000430104 SF3B2Q13435 895 aaKnown RBP25.35■■□□□ 1.65
SHH-202ENST00000430104 CCDC125Q86Z20 511 aa25.34■■□□□ 1.65
SHH-202ENST00000430104 NPC1L1Q9UHC9 1359 aa25.33■■□□□ 1.65
SHH-202ENST00000430104 EIF4A2Q14240 407 aaKnown RBP25.33■■□□□ 1.65
SHH-202ENST00000430104 MARCH10Q8NA82 808 aaPredicted RBP25.33■■□□□ 1.65
SHH-202ENST00000430104 DDX10Q13206 875 aaKnown RBP25.32■■□□□ 1.64
SHH-202ENST00000430104 TNS2Q63HR2 1409 aa25.31■■□□□ 1.64
SHH-202ENST00000430104 TRIM37O94972 964 aa25.31■■□□□ 1.64
SHH-202ENST00000430104 MTHFSP49914 203 aa25.31■■□□□ 1.64
SHH-202ENST00000430104 RGPD1P0DJD0 1748 aa25.31■■□□□ 1.64
SHH-202ENST00000430104 OVOS2A0A0G2JMS6 1433 aa25.3■■□□□ 1.64
SHH-202ENST00000430104 RAPGEF4Q8WZA2 1011 aa25.3■■□□□ 1.64
SHH-202ENST00000430104 EYA1Q99502 592 aa25.3■■□□□ 1.64
SHH-202ENST00000430104 EP400Q96L91 3159 aa25.3■■□□□ 1.64
SHH-202ENST00000430104 MEGF6O75095 1541 aa25.29■■□□□ 1.64
SHH-202ENST00000430104 TATP17735 454 aaPredicted RBP25.28■■□□□ 1.64
SHH-202ENST00000430104 DEFB132Q7Z7B7 95 aa25.28■■□□□ 1.64
SHH-202ENST00000430104 DDX54Q8TDD1 881 aaKnown RBP25.28■■□□□ 1.64
SHH-202ENST00000430104 SBF2Q86WG5 1849 aa25.27■■□□□ 1.64
SHH-202ENST00000430104 TNS1Q9HBL0 1735 aaKnown RBP25.26■■□□□ 1.63
SHH-202ENST00000430104 ZCRB1Q8TBF4 217 aaKnown RBP25.25■■□□□ 1.63
SHH-202ENST00000430104 KAT6BQ8WYB5 2073 aa25.24■■□□□ 1.63
SHH-202ENST00000430104 BAG6P46379 1132 aa25.23■■□□□ 1.63
SHH-202ENST00000430104 SHANK3Q9BYB0 1731 aa25.23■■□□□ 1.63
SHH-202ENST00000430104 APBA3O96018 575 aa25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 202.1 ms