RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 CREBZFQ9NS37 354 aa12.52□□□□□ -0.41
HDAC1-202ENST00000428704 STK32BQ9NY57 414 aa12.52□□□□□ -0.41
HDAC1-202ENST00000428704 CHD4Q14839 1912 aa12.52□□□□□ -0.41
HDAC1-202ENST00000428704 PELP1Q8IZL8 1130 aaKnown RBP12.51□□□□□ -0.41
HDAC1-202ENST00000428704 TCP11L2Q8N4U5 519 aa12.51□□□□□ -0.41
HDAC1-202ENST00000428704 HSPA6P17066 643 aa12.5□□□□□ -0.41
HDAC1-202ENST00000428704 ZC3H6P61129 1189 aaKnown RBP12.5□□□□□ -0.41
HDAC1-202ENST00000428704 SAFB2Q14151 953 aaKnown RBP eCLIP12.5□□□□□ -0.41
HDAC1-202ENST00000428704 SSH2Q76I76 1423 aa12.5□□□□□ -0.41
HDAC1-202ENST00000428704 ANKARQ7Z5J8 1434 aa12.5□□□□□ -0.41
HDAC1-202ENST00000428704 YTHDC2Q9H6S0 1430 aaKnown RBP12.5□□□□□ -0.41
HDAC1-202ENST00000428704 OVOS2A0A0G2JMS6 1433 aa12.49□□□□□ -0.41
HDAC1-202ENST00000428704 OVOS2A0A0J9YW53 1432 aa12.49□□□□□ -0.41
HDAC1-202ENST00000428704 OVOS2Q6IE36 1432 aa12.49□□□□□ -0.41
HDAC1-202ENST00000428704 SIRT1Q96EB6 747 aa12.49□□□□□ -0.41
HDAC1-202ENST00000428704 DHX57Q6P158 1386 aaKnown RBP12.48□□□□□ -0.41
HDAC1-202ENST00000428704 MAP3K5Q99683 1374 aa12.48□□□□□ -0.41
HDAC1-202ENST00000428704 PRKAR2AP13861 404 aaKnown RBP12.48□□□□□ -0.41
HDAC1-202ENST00000428704 SLC15A2Q16348 729 aa12.48□□□□□ -0.41
HDAC1-202ENST00000428704 LARP1Q6PKG0 1096 aaKnown RBP12.48□□□□□ -0.41
HDAC1-202ENST00000428704 SGIP1Q9BQI5 828 aa12.48□□□□□ -0.41
HDAC1-202ENST00000428704 ADGRB1O14514 1584 aa12.47□□□□□ -0.41
HDAC1-202ENST00000428704 KLHL34Q8N239 644 aa12.47□□□□□ -0.41
HDAC1-202ENST00000428704 THRAP3Q9Y2W1 955 aaKnown RBP12.47□□□□□ -0.41
HDAC1-202ENST00000428704 RGPD8O14715 1765 aaPredicted RBP12.46□□□□□ -0.41
HDAC1-202ENST00000428704 TRPM3Q9HCF6 1732 aaPredicted RBP12.46□□□□□ -0.41
HDAC1-202ENST00000428704 ALS2Q96Q42 1657 aa12.46□□□□□ -0.41
HDAC1-202ENST00000428704 CHADLQ6NUI6 762 aa12.46□□□□□ -0.41
HDAC1-202ENST00000428704 NGDNQ8NEJ9 315 aaKnown RBP12.46□□□□□ -0.41
HDAC1-202ENST00000428704 PRAM1Q96QH2 718 aa12.46□□□□□ -0.41
HDAC1-202ENST00000428704 PTF1AQ7RTS3 328 aa12.45□□□□□ -0.42
HDAC1-202ENST00000428704 RGPD3A6NKT7 1758 aaPredicted RBP12.45□□□□□ -0.42
HDAC1-202ENST00000428704 RGPD4Q7Z3J3 1758 aa12.45□□□□□ -0.42
HDAC1-202ENST00000428704 SHANK3Q9BYB0 1731 aa12.45□□□□□ -0.42
HDAC1-202ENST00000428704 TXNRD1Q16881 649 aa12.44□□□□□ -0.42
HDAC1-202ENST00000428704 C14orf93Q9H972 538 aaKnown RBP12.44□□□□□ -0.42
HDAC1-202ENST00000428704 POGKQ9P215 609 aa12.44□□□□□ -0.42
HDAC1-202ENST00000428704 GOLGB1Q14789 3259 aaKnown RBP12.43□□□□□ -0.42
HDAC1-202ENST00000428704 CFAP70Q5T0N1 1121 aa12.43□□□□□ -0.42
HDAC1-202ENST00000428704 IFNLR1Q8IU57 520 aaPredicted RBP12.43□□□□□ -0.42
HDAC1-202ENST00000428704 GPBP1L1Q9HC44 474 aaPredicted RBP12.43□□□□□ -0.42
HDAC1-202ENST00000428704 ARHGEF28Q8N1W1 1705 aaKnown RBP12.42□□□□□ -0.42
HDAC1-202ENST00000428704 ATP10DQ9P241 1426 aa12.42□□□□□ -0.42
HDAC1-202ENST00000428704 KIAA1210Q9ULL0 1709 aa12.42□□□□□ -0.42
HDAC1-202ENST00000428704 CRYBG1Q9Y4K1 1723 aa12.42□□□□□ -0.42
HDAC1-202ENST00000428704 EIF3AQ14152 1382 aaKnown RBP12.42□□□□□ -0.42
HDAC1-202ENST00000428704 DDB1Q16531 1140 aa12.41□□□□□ -0.42
HDAC1-202ENST00000428704 NUTM2GQ5VZR2 741 aa12.41□□□□□ -0.42
HDAC1-202ENST00000428704 ZBTB47Q9UFB7 747 aaPredicted RBP12.41□□□□□ -0.42
HDAC1-202ENST00000428704 PRR36Q9H6K5 1346 aa12.4□□□□□ -0.42
HDAC1-202ENST00000428704 GRIN3BO60391 1043 aa12.4□□□□□ -0.42
HDAC1-202ENST00000428704 MNX1P50219 401 aaPredicted RBP12.4□□□□□ -0.42
HDAC1-202ENST00000428704 HIRIP3Q9BW71 556 aaPredicted RBP12.4□□□□□ -0.42
HDAC1-202ENST00000428704 ATP7BP35670 1465 aa12.4□□□□□ -0.43
HDAC1-202ENST00000428704 POLD1P28340 1107 aa12.39□□□□□ -0.43
HDAC1-202ENST00000428704 DCAF11Q8TEB1 546 aa12.39□□□□□ -0.43
HDAC1-202ENST00000428704 PEAK1Q9H792 1746 aa12.38□□□□□ -0.43
HDAC1-202ENST00000428704 PARP4Q9UKK3 1724 aaKnown RBP12.38□□□□□ -0.43
HDAC1-202ENST00000428704 ZNF526Q8TF50 670 aaPredicted RBP12.38□□□□□ -0.43
HDAC1-202ENST00000428704 MINK1Q8N4C8 1332 aaPredicted RBP12.37□□□□□ -0.43
HDAC1-202ENST00000428704 PHRF1Q9P1Y6 1649 aaKnown RBP12.37□□□□□ -0.43
HDAC1-202ENST00000428704 KDM2AQ9Y2K7 1162 aa12.37□□□□□ -0.43
HDAC1-202ENST00000428704 FARP1Q9Y4F1 1045 aaPredicted RBP12.37□□□□□ -0.43
HDAC1-202ENST00000428704 TULP4Q9NRJ4 1543 aa12.37□□□□□ -0.43
HDAC1-202ENST00000428704 CRB1P82279 1406 aa12.37□□□□□ -0.43
HDAC1-202ENST00000428704 CPDO75976 1380 aa12.36□□□□□ -0.43
HDAC1-202ENST00000428704 MARCH10Q8NA82 808 aaPredicted RBP12.36□□□□□ -0.43
HDAC1-202ENST00000428704 NLGN2Q8NFZ4 835 aa12.36□□□□□ -0.43
HDAC1-202ENST00000428704 ZNF316A6NFI3 1004 aaPredicted RBP12.35□□□□□ -0.43
HDAC1-202ENST00000428704 YBX3P16989 372 aaKnown RBP eCLIP12.35□□□□□ -0.43
HDAC1-202ENST00000428704 COL13A1Q5TAT6 717 aaPredicted RBP12.35□□□□□ -0.43
HDAC1-202ENST00000428704 STAC3Q96MF2 364 aa12.35□□□□□ -0.43
HDAC1-202ENST00000428704 COL5A2P05997 1499 aaPredicted RBP12.34□□□□□ -0.43
HDAC1-202ENST00000428704 AATKQ6ZMQ8 1374 aa12.34□□□□□ -0.43
HDAC1-202ENST00000428704 TRPM1Q7Z4N2 1603 aa12.34□□□□□ -0.43
HDAC1-202ENST00000428704 ZBTB7CA1YPR0 619 aa12.34□□□□□ -0.43
HDAC1-202ENST00000428704 WASLO00401 505 aaPredicted RBP12.34□□□□□ -0.43
HDAC1-202ENST00000428704 APLP1P51693 650 aa12.34□□□□□ -0.43
HDAC1-202ENST00000428704 PRELPP51888 382 aa12.34□□□□□ -0.43
HDAC1-202ENST00000428704 TIMELESSQ9UNS1 1208 aa12.34□□□□□ -0.43
HDAC1-202ENST00000428704 BCL9O00512 1426 aa12.34□□□□□ -0.43
HDAC1-202ENST00000428704 LRRC37A3O60309 1634 aa12.33□□□□□ -0.43
HDAC1-202ENST00000428704 TOM1L2Q6ZVM7 507 aa12.33□□□□□ -0.44
HDAC1-202ENST00000428704 TNS4Q8IZW8 715 aa12.33□□□□□ -0.44
HDAC1-202ENST00000428704 LMO7Q8WWI1 1683 aa12.32□□□□□ -0.44
HDAC1-202ENST00000428704 ABTB2Q8N961 1025 aa12.32□□□□□ -0.44
HDAC1-202ENST00000428704 SLC16A10Q8TF71 515 aa12.32□□□□□ -0.44
HDAC1-202ENST00000428704 SIN3AQ96ST3 1273 aa12.32□□□□□ -0.44
HDAC1-202ENST00000428704 GCP02774 474 aa12.31□□□□□ -0.44
HDAC1-202ENST00000428704 ZNF827Q17R98 1081 aa12.31□□□□□ -0.44
HDAC1-202ENST00000428704 POTEHQ6S545 545 aa12.31□□□□□ -0.44
HDAC1-202ENST00000428704 CDCA7Q9BWT1 371 aaPredicted RBP12.31□□□□□ -0.44
HDAC1-202ENST00000428704 TRAK1Q9UPV9 953 aa12.31□□□□□ -0.44
HDAC1-202ENST00000428704 SBF2Q86WG5 1849 aa12.31□□□□□ -0.44
HDAC1-202ENST00000428704 TOPAZ1Q8N9V7 1692 aa12.3□□□□□ -0.44
HDAC1-202ENST00000428704 SLC34A2O95436 690 aa12.3□□□□□ -0.44
HDAC1-202ENST00000428704 ITSN1Q15811 1721 aa12.3□□□□□ -0.44
HDAC1-202ENST00000428704 USP19O94966 1318 aa12.3□□□□□ -0.44
HDAC1-202ENST00000428704 ADCY9O60503 1353 aa12.3□□□□□ -0.44
HDAC1-202ENST00000428704 QRICH2Q9H0J4 1663 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms