RNA–Protein interactions for RNA: ENST00000422544.2

PDGFC-202, Transcript of platelet derived growth factor C, humanhuman

TSL 5 BASIC

Gene PDGFC, Length 849 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-202ENST00000422544 OVOS2Q6IE36 1432 aa12.69□□□□□ -0.38
PDGFC-202ENST00000422544 CC2D1BQ5T0F9 858 aaKnown RBP12.68□□□□□ -0.38
PDGFC-202ENST00000422544 ARHGEF25Q86VW2 580 aa12.68□□□□□ -0.38
PDGFC-202ENST00000422544 TNNT2P45379 298 aaPredicted RBP12.67□□□□□ -0.38
PDGFC-202ENST00000422544 MORC1Q86VD1 984 aa12.67□□□□□ -0.38
PDGFC-202ENST00000422544 SLIT3O75094 1523 aa12.67□□□□□ -0.38
PDGFC-202ENST00000422544 BTG4Q9NY30 223 aa12.66□□□□□ -0.38
PDGFC-202ENST00000422544 CPDO75976 1380 aa12.66□□□□□ -0.38
PDGFC-202ENST00000422544 NRAPQ86VF7 1730 aa12.65□□□□□ -0.38
PDGFC-202ENST00000422544 BLMP54132 1417 aaPredicted RBP12.65□□□□□ -0.38
PDGFC-202ENST00000422544 RRS1Q15050 365 aaKnown RBP12.65□□□□□ -0.38
PDGFC-202ENST00000422544 GJD4Q96KN9 370 aaPredicted RBP12.65□□□□□ -0.38
PDGFC-202ENST00000422544 AXIN2Q9Y2T1 843 aa12.65□□□□□ -0.38
PDGFC-202ENST00000422544 TNS1Q9HBL0 1735 aaKnown RBP12.65□□□□□ -0.38
PDGFC-202ENST00000422544 NWD2Q9ULI1 1742 aa12.65□□□□□ -0.38
PDGFC-202ENST00000422544 CCDC125Q86Z20 511 aa12.64□□□□□ -0.39
PDGFC-202ENST00000422544 UNC5CLQ8IV45 518 aa12.64□□□□□ -0.39
PDGFC-202ENST00000422544 NSD2O96028 1365 aa12.64□□□□□ -0.39
PDGFC-202ENST00000422544 UTRNP46939 3433 aa12.63□□□□□ -0.39
PDGFC-202ENST00000422544 MAP3K19Q56UN5 1328 aa12.63□□□□□ -0.39
PDGFC-202ENST00000422544 EVA1CP58658 441 aa12.63□□□□□ -0.39
PDGFC-202ENST00000422544 STRN4Q9NRL3 753 aa12.63□□□□□ -0.39
PDGFC-202ENST00000422544 AATKQ6ZMQ8 1374 aa12.63□□□□□ -0.39
PDGFC-202ENST00000422544 NFAT5O94916 1531 aa12.62□□□□□ -0.39
PDGFC-202ENST00000422544 PHRF1Q9P1Y6 1649 aaKnown RBP12.62□□□□□ -0.39
PDGFC-202ENST00000422544 CRYBG1Q9Y4K1 1723 aa12.62□□□□□ -0.39
PDGFC-202ENST00000422544 NPC1L1Q9UHC9 1359 aa12.62□□□□□ -0.39
PDGFC-202ENST00000422544 PPM1GO15355 546 aaPredicted RBP12.62□□□□□ -0.39
PDGFC-202ENST00000422544 AMPHP49418 695 aa12.62□□□□□ -0.39
PDGFC-202ENST00000422544 IP6K1Q92551 441 aa12.62□□□□□ -0.39
PDGFC-202ENST00000422544 EMILIN1Q9Y6C2 1016 aa12.62□□□□□ -0.39
PDGFC-202ENST00000422544 POLKQ9UBT6 870 aa12.61□□□□□ -0.39
PDGFC-202ENST00000422544 CCDC9Q9Y3X0 531 aaKnown RBP12.61□□□□□ -0.39
PDGFC-202ENST00000422544 HOXC9P31274 260 aa12.6□□□□□ -0.39
PDGFC-202ENST00000422544 LARP1Q6PKG0 1096 aaKnown RBP12.6□□□□□ -0.39
PDGFC-202ENST00000422544 USP54Q70EL1 1684 aa12.59□□□□□ -0.39
PDGFC-202ENST00000422544 CAMTA1Q9Y6Y1 1673 aa12.59□□□□□ -0.39
PDGFC-202ENST00000422544 ONECUT3O60422 494 aaPredicted RBP12.59□□□□□ -0.39
PDGFC-202ENST00000422544 CSB-PGBD3P0DP91 1061 aa12.59□□□□□ -0.39
PDGFC-202ENST00000422544 VPS72Q15906 364 aa12.59□□□□□ -0.39
PDGFC-202ENST00000422544 HSP90AB2PQ58FF8 381 aa12.59□□□□□ -0.39
PDGFC-202ENST00000422544 LTV1Q96GA3 475 aaPredicted RBP12.59□□□□□ -0.39
PDGFC-202ENST00000422544 KIF20BQ96Q89 1820 aa12.59□□□□□ -0.39
PDGFC-202ENST00000422544 RGPD1P0DJD0 1748 aa12.58□□□□□ -0.4
PDGFC-202ENST00000422544 ANKRD24Q8TF21 1146 aa12.58□□□□□ -0.4
PDGFC-202ENST00000422544 COL14A1Q05707 1796 aaKnown RBP12.58□□□□□ -0.4
PDGFC-202ENST00000422544 PSDA5PKW4 1024 aaPredicted RBP12.57□□□□□ -0.4
PDGFC-202ENST00000422544 MTHFSP49914 203 aa12.57□□□□□ -0.4
PDGFC-202ENST00000422544 TOM1L2Q6ZVM7 507 aa12.57□□□□□ -0.4
PDGFC-202ENST00000422544 USP35Q9P2H5 1018 aa12.57□□□□□ -0.4
PDGFC-202ENST00000422544 SEPT12Q8IYM1 358 aa12.56□□□□□ -0.4
PDGFC-202ENST00000422544 COL5A2P05997 1499 aaPredicted RBP12.56□□□□□ -0.4
PDGFC-202ENST00000422544 SPATA31A5Q5VU36 1347 aa12.56□□□□□ -0.4
PDGFC-202ENST00000422544 SPATA31A7Q8IWB4 1347 aa12.56□□□□□ -0.4
PDGFC-202ENST00000422544 FLT4P35916 1363 aa12.56□□□□□ -0.4
PDGFC-202ENST00000422544 THSD7AQ9UPZ6 1657 aa12.55□□□□□ -0.4
PDGFC-202ENST00000422544 NLRP2Q9NX02 1062 aa12.55□□□□□ -0.4
PDGFC-202ENST00000422544 ERBB3P21860 1342 aa12.55□□□□□ -0.4
PDGFC-202ENST00000422544 SPATA31A1Q5TZJ5 1347 aa12.55□□□□□ -0.4
PDGFC-202ENST00000422544 WDR17Q8IZU2 1322 aa12.55□□□□□ -0.4
PDGFC-202ENST00000422544 RTL1A6NKG5 1358 aa12.55□□□□□ -0.4
PDGFC-202ENST00000422544 KIF24Q5T7B8 1368 aa12.55□□□□□ -0.4
PDGFC-202ENST00000422544 LMO7Q8WWI1 1683 aa12.54□□□□□ -0.4
PDGFC-202ENST00000422544 RREB1Q92766 1687 aa12.54□□□□□ -0.4
PDGFC-202ENST00000422544 COL18A1P39060 1754 aa12.54□□□□□ -0.4
PDGFC-202ENST00000422544 NPM3O75607 178 aaKnown RBP12.54□□□□□ -0.4
PDGFC-202ENST00000422544 PPP2R1AP30153 589 aa12.54□□□□□ -0.4
PDGFC-202ENST00000422544 INSRP06213 1382 aa12.54□□□□□ -0.4
PDGFC-202ENST00000422544 RALBP1Q15311 655 aa12.53□□□□□ -0.4
PDGFC-202ENST00000422544 FAM98CQ17RN3 349 aaKnown RBP12.53□□□□□ -0.4
PDGFC-202ENST00000422544 TCP11L2Q8N4U5 519 aa12.53□□□□□ -0.4
PDGFC-202ENST00000422544 CARD10Q9BWT7 1032 aa12.53□□□□□ -0.4
PDGFC-202ENST00000422544 RNF216Q9NWF9 866 aaPredicted RBP12.53□□□□□ -0.4
PDGFC-202ENST00000422544 NUP188Q5SRE5 1749 aa12.52□□□□□ -0.41
PDGFC-202ENST00000422544 EIF4A2Q14240 407 aaKnown RBP12.52□□□□□ -0.41
PDGFC-202ENST00000422544 NBPF6Q5VWK0 638 aa12.52□□□□□ -0.41
PDGFC-202ENST00000422544 NBPF4Q96M43 638 aa12.52□□□□□ -0.41
PDGFC-202ENST00000422544 PARD3Q8TEW0 1356 aa12.52□□□□□ -0.41
PDGFC-202ENST00000422544 CRB1P82279 1406 aa12.52□□□□□ -0.41
PDGFC-202ENST00000422544 ABCC6O95255 1503 aa12.52□□□□□ -0.41
PDGFC-202ENST00000422544 ANKRD26Q9UPS8 1709 aa12.51□□□□□ -0.41
PDGFC-202ENST00000422544 PRKRIP1Q9H875 184 aaPredicted RBP12.51□□□□□ -0.41
PDGFC-202ENST00000422544 PEAK1Q9H792 1746 aa12.51□□□□□ -0.41
PDGFC-202ENST00000422544 LTN1O94822 1766 aa12.51□□□□□ -0.41
PDGFC-202ENST00000422544 A0A0G2JS52 829 aa12.5□□□□□ -0.41
PDGFC-202ENST00000422544 MYT1Q01538 1121 aa12.5□□□□□ -0.41
PDGFC-202ENST00000422544 BARGINQ6ZT62 677 aa12.5□□□□□ -0.41
PDGFC-202ENST00000422544 USHBP1Q8N6Y0 703 aa12.5□□□□□ -0.41
PDGFC-202ENST00000422544 THRAP3Q9Y2W1 955 aaKnown RBP12.5□□□□□ -0.41
PDGFC-202ENST00000422544 SMG6Q86US8 1419 aaKnown RBP12.5□□□□□ -0.41
PDGFC-202ENST00000422544 DISP2A7MBM2 1401 aa12.49□□□□□ -0.41
PDGFC-202ENST00000422544 IL13P35225 146 aa12.49□□□□□ -0.41
PDGFC-202ENST00000422544 FAM182BQ5T319 152 aa12.49□□□□□ -0.41
PDGFC-202ENST00000422544 EYA1Q99502 592 aa12.49□□□□□ -0.41
PDGFC-202ENST00000422544 MAP2P11137 1827 aaKnown RBP12.48□□□□□ -0.41
PDGFC-202ENST00000422544 CEP350Q5VT06 3117 aa12.48□□□□□ -0.41
PDGFC-202ENST00000422544 ANP32CO43423 234 aa12.48□□□□□ -0.41
PDGFC-202ENST00000422544 DIAPH1O60610 1272 aaKnown RBP12.48□□□□□ -0.41
PDGFC-202ENST00000422544 EN1Q05925 392 aaPredicted RBP12.48□□□□□ -0.41
PDGFC-202ENST00000422544 KRT27Q7Z3Y8 459 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms