RNA–Protein interactions for RNA: ENST00000422379.2

HPS4-204, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 5

Gene HPS4, Length 1,942 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-204ENST00000422379 CFAP53Q96M91 514 aa11.98□□□□□ -0.49
HPS4-204ENST00000422379 AXIN2Q9Y2T1 843 aa11.98□□□□□ -0.49
HPS4-204ENST00000422379 ABCA3Q99758 1704 aa11.97□□□□□ -0.49
HPS4-204ENST00000422379 FLT4P35916 1363 aa11.97□□□□□ -0.49
HPS4-204ENST00000422379 ZBTB22O15209 634 aa11.97□□□□□ -0.49
HPS4-204ENST00000422379 PHLPP1O60346 1717 aa11.96□□□□□ -0.49
HPS4-204ENST00000422379 HNRNPUQ00839 825 aaKnown RBP eCLIP11.96□□□□□ -0.49
HPS4-204ENST00000422379 WDR43Q15061 677 aaKnown RBP eCLIP11.96□□□□□ -0.49
HPS4-204ENST00000422379 KCNH5Q8NCM2 988 aa11.96□□□□□ -0.49
HPS4-204ENST00000422379 ZBTB7CA1YPR0 619 aa11.96□□□□□ -0.5
HPS4-204ENST00000422379 U2SURPO15042 1029 aaKnown RBP11.96□□□□□ -0.5
HPS4-204ENST00000422379 AMPHP49418 695 aa11.96□□□□□ -0.5
HPS4-204ENST00000422379 RGPD1P0DJD0 1748 aa11.95□□□□□ -0.5
HPS4-204ENST00000422379 KIAA0232Q92628 1395 aa11.95□□□□□ -0.5
HPS4-204ENST00000422379 U2AF1L5P0DN76 240 aaPredicted RBP11.95□□□□□ -0.5
HPS4-204ENST00000422379 U2AF1Q01081 240 aaKnown RBP eCLIP11.95□□□□□ -0.56e-11■■■■□ 21.2
HPS4-204ENST00000422379 CHRNA2Q15822 529 aa11.95□□□□□ -0.5
HPS4-204ENST00000422379 AEBP1Q8IUX7 1158 aa11.95□□□□□ -0.5
HPS4-204ENST00000422379 IP6K1Q92551 441 aa11.95□□□□□ -0.5
HPS4-204ENST00000422379 COL18A1P39060 1754 aa11.95□□□□□ -0.5
HPS4-204ENST00000422379 LRRC59Q96AG4 307 aaKnown RBP11.94□□□□□ -0.5
HPS4-204ENST00000422379 RTL1A6NKG5 1358 aa11.94□□□□□ -0.5
HPS4-204ENST00000422379 KIF24Q5T7B8 1368 aa11.94□□□□□ -0.5
HPS4-204ENST00000422379 COL22A1Q8NFW1 1626 aaPredicted RBP11.94□□□□□ -0.5
HPS4-204ENST00000422379 HMOX1P09601 288 aa11.94□□□□□ -0.5
HPS4-204ENST00000422379 PLEKHF1Q96S99 279 aa11.94□□□□□ -0.5
HPS4-204ENST00000422379 LTV1Q96GA3 475 aaPredicted RBP11.93□□□□□ -0.5
HPS4-204ENST00000422379 RSPH6AQ9H0K4 717 aa11.93□□□□□ -0.5
HPS4-204ENST00000422379 CPDO75976 1380 aa11.93□□□□□ -0.5
HPS4-204ENST00000422379 PELP1Q8IZL8 1130 aaKnown RBP11.92□□□□□ -0.5
HPS4-204ENST00000422379 EYA1Q99502 592 aa11.92□□□□□ -0.5
HPS4-204ENST00000422379 SALL2Q9Y467 1007 aaPredicted RBP11.92□□□□□ -0.5
HPS4-204ENST00000422379 RGPD5Q99666 1765 aa11.91□□□□□ -0.5
HPS4-204ENST00000422379 APAF1O14727 1248 aa11.91□□□□□ -0.5
HPS4-204ENST00000422379 PHACTR3Q96KR7 559 aa11.91□□□□□ -0.5
HPS4-204ENST00000422379 LMO7Q8WWI1 1683 aa11.91□□□□□ -0.5
HPS4-204ENST00000422379 IGSF1Q8N6C5 1336 aa11.91□□□□□ -0.5
HPS4-204ENST00000422379 CAMTA1Q9Y6Y1 1673 aa11.9□□□□□ -0.5
HPS4-204ENST00000422379 NBPF6Q5VWK0 638 aa11.9□□□□□ -0.5
HPS4-204ENST00000422379 USHBP1Q8N6Y0 703 aa11.9□□□□□ -0.5
HPS4-204ENST00000422379 NBPF4Q96M43 638 aa11.9□□□□□ -0.5
HPS4-204ENST00000422379 NUDCQ9Y266 331 aa11.9□□□□□ -0.5
HPS4-204ENST00000422379 FAM83GA6ND36 823 aa11.9□□□□□ -0.51
HPS4-204ENST00000422379 HSPA1LP34931 641 aa11.9□□□□□ -0.51
HPS4-204ENST00000422379 SULT6B1Q6IMI4 303 aa11.9□□□□□ -0.51
HPS4-204ENST00000422379 RRP7AQ9Y3A4 280 aaKnown RBP11.9□□□□□ -0.51
HPS4-204ENST00000422379 RGPD2P0DJD1 1756 aa11.89□□□□□ -0.51
HPS4-204ENST00000422379 KDRP35968 1356 aa11.89□□□□□ -0.51
HPS4-204ENST00000422379 PRKAR2BP31323 418 aa11.89□□□□□ -0.51
HPS4-204ENST00000422379 ANKRD24Q8TF21 1146 aa11.89□□□□□ -0.51
HPS4-204ENST00000422379 RUNDC1Q96C34 613 aa11.89□□□□□ -0.51
HPS4-204ENST00000422379 ERBB3P21860 1342 aa11.89□□□□□ -0.51
HPS4-204ENST00000422379 ZBED9Q6R2W3 1325 aa11.89□□□□□ -0.51
HPS4-204ENST00000422379 TCP11L2Q8N4U5 519 aa11.88□□□□□ -0.51
HPS4-204ENST00000422379 PRDM11Q9NQV5 511 aa11.88□□□□□ -0.51
HPS4-204ENST00000422379 FCHSD2O94868 740 aa11.88□□□□□ -0.51
HPS4-204ENST00000422379 SUPT16HQ9Y5B9 1047 aaKnown RBP11.88□□□□□ -0.51
HPS4-204ENST00000422379 ZNF521Q96K83 1311 aa11.87□□□□□ -0.51
HPS4-204ENST00000422379 NCAPD2Q15021 1401 aa11.87□□□□□ -0.51
HPS4-204ENST00000422379 ABCC6O95255 1503 aa11.87□□□□□ -0.51
HPS4-204ENST00000422379 COL5A2P05997 1499 aaPredicted RBP11.86□□□□□ -0.51
HPS4-204ENST00000422379 HAP1P54257 671 aaPredicted RBP11.86□□□□□ -0.51
HPS4-204ENST00000422379 ADAMTS2O95450 1211 aa11.86□□□□□ -0.51
HPS4-204ENST00000422379 LRP6O75581 1613 aa11.85□□□□□ -0.51
HPS4-204ENST00000422379 NUTM2BA6NNL0 878 aaPredicted RBP11.85□□□□□ -0.51
HPS4-204ENST00000422379 NUTM2EB1AL46 878 aaPredicted RBP11.85□□□□□ -0.51
HPS4-204ENST00000422379 NEUROD2Q15784 382 aa11.85□□□□□ -0.51
HPS4-204ENST00000422379 NUTM2AQ8IVF1 878 aaPredicted RBP11.85□□□□□ -0.51
HPS4-204ENST00000422379 CDCA7LQ96GN5 454 aa11.85□□□□□ -0.51
HPS4-204ENST00000422379 FAM208AQ9UK61 1670 aaKnown RBP11.85□□□□□ -0.51
HPS4-204ENST00000422379 JCADQ9P266 1359 aa11.85□□□□□ -0.51
HPS4-204ENST00000422379 TMPOP42166 694 aaKnown RBP11.84□□□□□ -0.51
HPS4-204ENST00000422379 SPINK5Q9NQ38 1064 aaPredicted RBP11.84□□□□□ -0.51
HPS4-204ENST00000422379 TRIM35Q9UPQ4 493 aa11.84□□□□□ -0.51
HPS4-204ENST00000422379 LARP1Q6PKG0 1096 aaKnown RBP11.83□□□□□ -0.52
HPS4-204ENST00000422379 BTG4Q9NY30 223 aa11.83□□□□□ -0.52
HPS4-204ENST00000422379 WWC1Q8IX03 1113 aa11.82□□□□□ -0.52
HPS4-204ENST00000422379 COL14A1Q05707 1796 aaKnown RBP11.82□□□□□ -0.52
HPS4-204ENST00000422379 MEGF6O75095 1541 aa11.82□□□□□ -0.52
HPS4-204ENST00000422379 WDR17Q8IZU2 1322 aa11.82□□□□□ -0.52
HPS4-204ENST00000422379 MAPK8IP3Q9UPT6 1336 aa11.82□□□□□ -0.52
HPS4-204ENST00000422379 MTHFSDQ2M296 383 aaKnown RBP11.82□□□□□ -0.52
HPS4-204ENST00000422379 NLRP2Q9NX02 1062 aa11.82□□□□□ -0.52
HPS4-204ENST00000422379 NFE2L2Q16236 605 aa11.81□□□□□ -0.52
HPS4-204ENST00000422379 THUMPD2Q9BTF0 503 aaKnown RBP11.81□□□□□ -0.52
HPS4-204ENST00000422379 STRN4Q9NRL3 753 aa11.81□□□□□ -0.52
HPS4-204ENST00000422379 PLCH1Q4KWH8 1693 aa11.81□□□□□ -0.52
HPS4-204ENST00000422379 CSB-PGBD3P0DP91 1061 aa11.8□□□□□ -0.52
HPS4-204ENST00000422379 RIPK4P57078 832 aa11.8□□□□□ -0.52
HPS4-204ENST00000422379 FKBP8Q14318 412 aa11.8□□□□□ -0.52
HPS4-204ENST00000422379 SLIT2O94813 1529 aa11.8□□□□□ -0.52
HPS4-204ENST00000422379 NRAPQ86VF7 1730 aa11.79□□□□□ -0.52
HPS4-204ENST00000422379 DCTN1Q14203 1278 aa11.79□□□□□ -0.52
HPS4-204ENST00000422379 CCDC27Q2M243 656 aa11.79□□□□□ -0.52
HPS4-204ENST00000422379 DLG5Q8TDM6 1919 aa11.78□□□□□ -0.52
HPS4-204ENST00000422379 SPATA31A6Q5VVP1 1343 aa11.78□□□□□ -0.52
HPS4-204ENST00000422379 NEFLP07196 543 aa11.78□□□□□ -0.52
HPS4-204ENST00000422379 TOM1L2Q6ZVM7 507 aa11.78□□□□□ -0.52
HPS4-204ENST00000422379 PNNQ9H307 717 aaKnown RBP11.78□□□□□ -0.52
HPS4-204ENST00000422379 BCL9LQ86UU0 1499 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms