RNA–Protein interactions for RNA: ENST00000418660.1

LINC00404-201, long intergenic non-protein coding RNA 404, humanhuman

TSL 2 BASIC

Gene LINC00404, Length 428 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00404-201ENST00000418660 USP54Q70EL1 1684 aa23.06■■□□□ 1.28
LINC00404-201ENST00000418660 AXIN2Q9Y2T1 843 aa23.06■■□□□ 1.28
LINC00404-201ENST00000418660 SF3B2Q13435 895 aaKnown RBP23.05■■□□□ 1.28
LINC00404-201ENST00000418660 CDCA8Q53HL2 280 aa23.05■■□□□ 1.28
LINC00404-201ENST00000418660 EP400Q96L91 3159 aa23.04■■□□□ 1.28
LINC00404-201ENST00000418660 ANKRD36BQ8N2N9 1353 aa23.03■■□□□ 1.28
LINC00404-201ENST00000418660 WDR17Q8IZU2 1322 aa23.03■■□□□ 1.28
LINC00404-201ENST00000418660 FAM182BQ5T319 152 aa23.02■■□□□ 1.28
LINC00404-201ENST00000418660 TOM1L2Q6ZVM7 507 aa23.02■■□□□ 1.28
LINC00404-201ENST00000418660 ABCC6O95255 1503 aa23.01■■□□□ 1.27
LINC00404-201ENST00000418660 OVOS2A0A0J9YW53 1432 aa23■■□□□ 1.27
LINC00404-201ENST00000418660 OVOS2Q6IE36 1432 aa23■■□□□ 1.27
LINC00404-201ENST00000418660 PDE3BQ13370 1112 aa23■■□□□ 1.27
LINC00404-201ENST00000418660 DEFB132Q7Z7B7 95 aa22.99■■□□□ 1.27
LINC00404-201ENST00000418660 FAM196AQ6ZSG2 479 aa22.98■■□□□ 1.27
LINC00404-201ENST00000418660 CSB-PGBD3P0DP91 1061 aa22.97■■□□□ 1.27
LINC00404-201ENST00000418660 COG3Q96JB2 828 aa22.96■■□□□ 1.27
LINC00404-201ENST00000418660 CARD10Q9BWT7 1032 aa22.96■■□□□ 1.27
LINC00404-201ENST00000418660 RGPD5Q99666 1765 aa22.96■■□□□ 1.27
LINC00404-201ENST00000418660 BAG6P46379 1132 aa22.95■■□□□ 1.26
LINC00404-201ENST00000418660 PARP4Q9UKK3 1724 aaKnown RBP22.95■■□□□ 1.26
LINC00404-201ENST00000418660 EIF4G2P78344 907 aaKnown RBP eCLIP22.94■■□□□ 1.26
LINC00404-201ENST00000418660 RGPD1P0DJD0 1748 aa22.94■■□□□ 1.26
LINC00404-201ENST00000418660 CDCA7Q9BWT1 371 aaPredicted RBP22.93■■□□□ 1.26
LINC00404-201ENST00000418660 LTN1O94822 1766 aa22.92■■□□□ 1.26
LINC00404-201ENST00000418660 CCDC7Q96M83 1385 aa22.91■■□□□ 1.26
LINC00404-201ENST00000418660 ERBB3P21860 1342 aa22.91■■□□□ 1.26
LINC00404-201ENST00000418660 FYB1O15117 783 aa22.91■■□□□ 1.26
LINC00404-201ENST00000418660 DDB1Q16531 1140 aa22.91■■□□□ 1.26
LINC00404-201ENST00000418660 C11orf95C9JLR9 678 aaPredicted RBP22.9■■□□□ 1.26
LINC00404-201ENST00000418660 TRIM37O94972 964 aa22.9■■□□□ 1.26
LINC00404-201ENST00000418660 HSPA5P11021 654 aaKnown RBP22.89■■□□□ 1.25
LINC00404-201ENST00000418660 IP6K1Q92551 441 aa22.89■■□□□ 1.25
LINC00404-201ENST00000418660 MYOM1P52179 1685 aa22.89■■□□□ 1.25
LINC00404-201ENST00000418660 DISP2A7MBM2 1401 aa22.89■■□□□ 1.25
LINC00404-201ENST00000418660 ANKRD24Q8TF21 1146 aa22.88■■□□□ 1.25
LINC00404-201ENST00000418660 GGNBP2Q9H3C7 697 aa22.88■■□□□ 1.25
LINC00404-201ENST00000418660 LRRC37A3O60309 1634 aa22.88■■□□□ 1.25
LINC00404-201ENST00000418660 WNK3Q9BYP7 1800 aa22.87■■□□□ 1.25
LINC00404-201ENST00000418660 EN1Q05925 392 aaPredicted RBP22.87■■□□□ 1.25
LINC00404-201ENST00000418660 CARD14Q9BXL6 1004 aa22.87■■□□□ 1.25
LINC00404-201ENST00000418660 NLRP2Q9NX02 1062 aa22.87■■□□□ 1.25
LINC00404-201ENST00000418660 TNS1Q9HBL0 1735 aaKnown RBP22.87■■□□□ 1.25
LINC00404-201ENST00000418660 MAP3K19Q56UN5 1328 aa22.86■■□□□ 1.25
LINC00404-201ENST00000418660 OVOS2A0A0G2JMS6 1433 aa22.85■■□□□ 1.25
LINC00404-201ENST00000418660 FBLN1P23142 703 aa22.85■■□□□ 1.25
LINC00404-201ENST00000418660 EXOC5O00471 708 aa22.84■■□□□ 1.25
LINC00404-201ENST00000418660 APBA3O96018 575 aa22.83■■□□□ 1.25
LINC00404-201ENST00000418660 AMPHP49418 695 aa22.83■■□□□ 1.25
LINC00404-201ENST00000418660 POLR3GLQ9BT43 218 aa22.83■■□□□ 1.25
LINC00404-201ENST00000418660 NSD3Q9BZ95 1437 aa22.82■■□□□ 1.24
LINC00404-201ENST00000418660 PEAK1Q9H792 1746 aa22.82■■□□□ 1.24
LINC00404-201ENST00000418660 HOXC9P31274 260 aa22.82■■□□□ 1.24
LINC00404-201ENST00000418660 MARCH10Q8NA82 808 aaPredicted RBP22.82■■□□□ 1.24
LINC00404-201ENST00000418660 KIF20BQ96Q89 1820 aa22.81■■□□□ 1.24
LINC00404-201ENST00000418660 EZH2Q15910 746 aaKnown RBP22.81■■□□□ 1.24
LINC00404-201ENST00000418660 CAMKK2Q96RR4 588 aa22.81■■□□□ 1.24
LINC00404-201ENST00000418660 IL2RBP14784 551 aa22.8■■□□□ 1.24
LINC00404-201ENST00000418660 LTV1Q96GA3 475 aaPredicted RBP22.8■■□□□ 1.24
LINC00404-201ENST00000418660 RTL1A6NKG5 1358 aa22.79■■□□□ 1.24
LINC00404-201ENST00000418660 PARD3Q8TEW0 1356 aa22.79■■□□□ 1.24
LINC00404-201ENST00000418660 RRS1Q15050 365 aaKnown RBP22.79■■□□□ 1.24
LINC00404-201ENST00000418660 BCL9O00512 1426 aa22.79■■□□□ 1.24
LINC00404-201ENST00000418660 TNS2Q63HR2 1409 aa22.78■■□□□ 1.24
LINC00404-201ENST00000418660 FAM208AQ9UK61 1670 aaKnown RBP22.77■■□□□ 1.24
LINC00404-201ENST00000418660 CGNL1Q0VF96 1302 aa22.77■■□□□ 1.24
LINC00404-201ENST00000418660 BCL11BQ9C0K0 894 aaPredicted RBP22.75■■□□□ 1.23
LINC00404-201ENST00000418660 KIF24Q5T7B8 1368 aa22.75■■□□□ 1.23
LINC00404-201ENST00000418660 SBF2Q86WG5 1849 aa22.73■■□□□ 1.23
LINC00404-201ENST00000418660 INSRP06213 1382 aa22.72■■□□□ 1.23
LINC00404-201ENST00000418660 PLSCR1O15162 318 aa22.71■■□□□ 1.23
LINC00404-201ENST00000418660 PANK3Q9H999 370 aa22.71■■□□□ 1.23
LINC00404-201ENST00000418660 FLT4P35916 1363 aa22.71■■□□□ 1.23
LINC00404-201ENST00000418660 PSDA5PKW4 1024 aaPredicted RBP22.7■■□□□ 1.22
LINC00404-201ENST00000418660 HSP90AB2PQ58FF8 381 aa22.7■■□□□ 1.22
LINC00404-201ENST00000418660 PTF1AQ7RTS3 328 aa22.7■■□□□ 1.22
LINC00404-201ENST00000418660 SMG6Q86US8 1419 aaKnown RBP22.7■■□□□ 1.22
LINC00404-201ENST00000418660 RREB1Q92766 1687 aa22.69■■□□□ 1.22
LINC00404-201ENST00000418660 NBPF6Q5VWK0 638 aa22.68■■□□□ 1.22
LINC00404-201ENST00000418660 NBPF4Q96M43 638 aa22.68■■□□□ 1.22
LINC00404-201ENST00000418660 EMILIN1Q9Y6C2 1016 aa22.68■■□□□ 1.22
LINC00404-201ENST00000418660 R3HDM1Q15032 1099 aaKnown RBP22.67■■□□□ 1.22
LINC00404-201ENST00000418660 RGPD2P0DJD1 1756 aa22.66■■□□□ 1.22
LINC00404-201ENST00000418660 KCNQ2O43526 872 aa22.65■■□□□ 1.22
LINC00404-201ENST00000418660 NBPF14Q5TI25 921 aa22.65■■□□□ 1.22
LINC00404-201ENST00000418660 DDX54Q8TDD1 881 aaKnown RBP22.65■■□□□ 1.22
LINC00404-201ENST00000418660 RGPD3A6NKT7 1758 aaPredicted RBP22.65■■□□□ 1.22
LINC00404-201ENST00000418660 RGPD4Q7Z3J3 1758 aa22.65■■□□□ 1.22
LINC00404-201ENST00000418660 NUP188Q5SRE5 1749 aa22.65■■□□□ 1.22
LINC00404-201ENST00000418660 PPM1GO15355 546 aaPredicted RBP22.64■■□□□ 1.21
LINC00404-201ENST00000418660 USHBP1Q8N6Y0 703 aa22.63■■□□□ 1.21
LINC00404-201ENST00000418660 ZCRB1Q8TBF4 217 aaKnown RBP22.63■■□□□ 1.21
LINC00404-201ENST00000418660 ACSBG1Q96GR2 724 aa22.63■■□□□ 1.21
LINC00404-201ENST00000418660 POLKQ9UBT6 870 aa22.63■■□□□ 1.21
LINC00404-201ENST00000418660 NSD2O96028 1365 aa22.63■■□□□ 1.21
LINC00404-201ENST00000418660 ANKRD26Q9UPS8 1709 aa22.62■■□□□ 1.21
LINC00404-201ENST00000418660 MEGF6O75095 1541 aa22.62■■□□□ 1.21
LINC00404-201ENST00000418660 KIF7Q2M1P5 1343 aa22.62■■□□□ 1.21
LINC00404-201ENST00000418660 WASHC2AQ641Q2 1341 aa22.62■■□□□ 1.21
LINC00404-201ENST00000418660 NHSQ6T4R5 1651 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms