RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 MYBBP1AQ9BQG0 1328 aaKnown RBP11.41□□□□□ -0.58
TRIM48-201ENST00000417545 U3KPZ7 1027 aaPredicted RBP11.41□□□□□ -0.58
TRIM48-201ENST00000417545 SMG6Q86US8 1419 aaKnown RBP11.4□□□□□ -0.58
TRIM48-201ENST00000417545 KIAA0232Q92628 1395 aa11.4□□□□□ -0.58
TRIM48-201ENST00000417545 PRKRIP1Q9H875 184 aaPredicted RBP11.4□□□□□ -0.58
TRIM48-201ENST00000417545 PLCH1Q4KWH8 1693 aa11.39□□□□□ -0.59
TRIM48-201ENST00000417545 AATKQ6ZMQ8 1374 aa11.39□□□□□ -0.59
TRIM48-201ENST00000417545 C8orf37Q96NL8 207 aa11.39□□□□□ -0.59
TRIM48-201ENST00000417545 RTL1A6NKG5 1358 aa11.38□□□□□ -0.59
TRIM48-201ENST00000417545 FLT4P35916 1363 aa11.38□□□□□ -0.59
TRIM48-201ENST00000417545 MAP3K19Q56UN5 1328 aa11.38□□□□□ -0.59
TRIM48-201ENST00000417545 PPP2R1AP30153 589 aa11.38□□□□□ -0.59
TRIM48-201ENST00000417545 CHRNA2Q15822 529 aa11.38□□□□□ -0.59
TRIM48-201ENST00000417545 NGLY1Q96IV0 654 aa11.38□□□□□ -0.59
TRIM48-201ENST00000417545 EMILIN1Q9Y6C2 1016 aa11.38□□□□□ -0.59
TRIM48-201ENST00000417545 RGPD5Q99666 1765 aa11.38□□□□□ -0.59
TRIM48-201ENST00000417545 CPDO75976 1380 aa11.37□□□□□ -0.59
TRIM48-201ENST00000417545 NPM3O75607 178 aaKnown RBP11.37□□□□□ -0.59
TRIM48-201ENST00000417545 CSB-PGBD3P0DP91 1061 aa11.37□□□□□ -0.59
TRIM48-201ENST00000417545 FBLN1P23142 703 aa11.37□□□□□ -0.59
TRIM48-201ENST00000417545 MTHFSP49914 203 aa11.37□□□□□ -0.59
TRIM48-201ENST00000417545 EVA1CP58658 441 aa11.37□□□□□ -0.59
TRIM48-201ENST00000417545 ILDR1Q86SU0 546 aaPredicted RBP11.37□□□□□ -0.59
TRIM48-201ENST00000417545 ABCC6O95255 1503 aa11.37□□□□□ -0.59
TRIM48-201ENST00000417545 LRP6O75581 1613 aa11.37□□□□□ -0.59
TRIM48-201ENST00000417545 ARHGEF25Q86VW2 580 aa11.36□□□□□ -0.59
TRIM48-201ENST00000417545 LTV1Q96GA3 475 aaPredicted RBP11.36□□□□□ -0.59
TRIM48-201ENST00000417545 POLKQ9UBT6 870 aa11.36□□□□□ -0.59
TRIM48-201ENST00000417545 CDK12Q9NYV4 1490 aaPredicted RBP11.36□□□□□ -0.59
TRIM48-201ENST00000417545 KIF24Q5T7B8 1368 aa11.36□□□□□ -0.59
TRIM48-201ENST00000417545 PEAK1Q9H792 1746 aa11.36□□□□□ -0.59
TRIM48-201ENST00000417545 NWD2Q9ULI1 1742 aa11.36□□□□□ -0.59
TRIM48-201ENST00000417545 STRN4Q9NRL3 753 aa11.35□□□□□ -0.59
TRIM48-201ENST00000417545 FAM208AQ9UK61 1670 aaKnown RBP11.35□□□□□ -0.59
TRIM48-201ENST00000417545 BLMP54132 1417 aaPredicted RBP11.35□□□□□ -0.59
TRIM48-201ENST00000417545 HOXC9P31274 260 aa11.35□□□□□ -0.59
TRIM48-201ENST00000417545 IP6K1Q92551 441 aa11.35□□□□□ -0.59
TRIM48-201ENST00000417545 BTG4Q9NY30 223 aa11.35□□□□□ -0.59
TRIM48-201ENST00000417545 NUDCQ9Y266 331 aa11.35□□□□□ -0.59
TRIM48-201ENST00000417545 CCDC9Q9Y3X0 531 aaKnown RBP11.35□□□□□ -0.59
TRIM48-201ENST00000417545 WDR43Q15061 677 aaKnown RBP eCLIP11.34□□□□□ -0.59
TRIM48-201ENST00000417545 ANKRD24Q8TF21 1146 aa11.34□□□□□ -0.59
TRIM48-201ENST00000417545 MRS2Q9HD23 443 aa11.34□□□□□ -0.59
TRIM48-201ENST00000417545 INSRP06213 1382 aa11.33□□□□□ -0.6
TRIM48-201ENST00000417545 LMO7Q8WWI1 1683 aa11.33□□□□□ -0.6
TRIM48-201ENST00000417545 COL18A1P39060 1754 aa11.33□□□□□ -0.6
TRIM48-201ENST00000417545 FAM83GA6ND36 823 aa11.33□□□□□ -0.6
TRIM48-201ENST00000417545 DIAPH1O60610 1272 aaKnown RBP11.33□□□□□ -0.6
TRIM48-201ENST00000417545 AFF2P51816 1311 aa11.32□□□□□ -0.6
TRIM48-201ENST00000417545 U2SURPO15042 1029 aaKnown RBP11.32□□□□□ -0.6
TRIM48-201ENST00000417545 HSP90AB2PQ58FF8 381 aa11.32□□□□□ -0.6
TRIM48-201ENST00000417545 TOM1L2Q6ZVM7 507 aa11.32□□□□□ -0.6
TRIM48-201ENST00000417545 NLRP2Q9NX02 1062 aa11.32□□□□□ -0.6
TRIM48-201ENST00000417545 USP21Q9UK80 565 aa11.32□□□□□ -0.6
TRIM48-201ENST00000417545 NRAPQ86VF7 1730 aa11.32□□□□□ -0.6
TRIM48-201ENST00000417545 MIER1Q8N108 512 aa11.31□□□□□ -0.6
TRIM48-201ENST00000417545 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.31□□□□□ -0.6
TRIM48-201ENST00000417545 COL5A2P05997 1499 aaPredicted RBP11.31□□□□□ -0.6
TRIM48-201ENST00000417545 CAMTA1Q9Y6Y1 1673 aa11.31□□□□□ -0.6
TRIM48-201ENST00000417545 NEFMP07197 916 aa11.3□□□□□ -0.6
TRIM48-201ENST00000417545 RGPD2P0DJD1 1756 aa11.3□□□□□ -0.6
TRIM48-201ENST00000417545 ERBB3P21860 1342 aa11.3□□□□□ -0.6
TRIM48-201ENST00000417545 WDR17Q8IZU2 1322 aa11.3□□□□□ -0.6
TRIM48-201ENST00000417545 A0A0G2JS52 829 aa11.29□□□□□ -0.6
TRIM48-201ENST00000417545 MYT1Q01538 1121 aa11.29□□□□□ -0.6
TRIM48-201ENST00000417545 EIF4A2Q14240 407 aaKnown RBP11.29□□□□□ -0.6
TRIM48-201ENST00000417545 UNC5CLQ8IV45 518 aa11.29□□□□□ -0.6
TRIM48-201ENST00000417545 USP35Q9P2H5 1018 aa11.29□□□□□ -0.6
TRIM48-201ENST00000417545 AXIN2Q9Y2T1 843 aa11.29□□□□□ -0.6
TRIM48-201ENST00000417545 SLIT2O94813 1529 aa11.29□□□□□ -0.6
TRIM48-201ENST00000417545 CCER2I3L3R5 266 aa11.28□□□□□ -0.6
TRIM48-201ENST00000417545 U2AF1L5P0DN76 240 aaPredicted RBP11.28□□□□□ -0.6
TRIM48-201ENST00000417545 U2AF1Q01081 240 aaKnown RBP eCLIP11.28□□□□□ -0.6
TRIM48-201ENST00000417545 ZNF772Q68DY9 489 aaPredicted RBP11.28□□□□□ -0.6
TRIM48-201ENST00000417545 CRB1P82279 1406 aa11.28□□□□□ -0.6
TRIM48-201ENST00000417545 LARP1Q6PKG0 1096 aaKnown RBP11.27□□□□□ -0.6
TRIM48-201ENST00000417545 TRPC5Q9UL62 973 aaPredicted RBP11.27□□□□□ -0.6
TRIM48-201ENST00000417545 COL3A1P02461 1466 aaPredicted RBP11.27□□□□□ -0.61
TRIM48-201ENST00000417545 FNBP4Q8N3X1 1017 aaPredicted RBP11.26□□□□□ -0.61
TRIM48-201ENST00000417545 USHBP1Q8N6Y0 703 aa11.26□□□□□ -0.61
TRIM48-201ENST00000417545 PNNQ9H307 717 aaKnown RBP11.26□□□□□ -0.61
TRIM48-201ENST00000417545 IL13P35225 146 aa11.26□□□□□ -0.61
TRIM48-201ENST00000417545 FAM9BQ8IZU0 186 aa11.26□□□□□ -0.61
TRIM48-201ENST00000417545 RAPGEF4Q8WZA2 1011 aa11.26□□□□□ -0.61
TRIM48-201ENST00000417545 PARP4Q9UKK3 1724 aaKnown RBP11.26□□□□□ -0.61
TRIM48-201ENST00000417545 WNK3Q9BYP7 1800 aa11.25□□□□□ -0.61
TRIM48-201ENST00000417545 HMOX1P09601 288 aa11.25□□□□□ -0.61
TRIM48-201ENST00000417545 TATP17735 454 aaPredicted RBP11.25□□□□□ -0.61
TRIM48-201ENST00000417545 VPS72Q15906 364 aa11.25□□□□□ -0.61
TRIM48-201ENST00000417545 SULT6B1Q6IMI4 303 aa11.25□□□□□ -0.61
TRIM48-201ENST00000417545 CARD10Q9BWT7 1032 aa11.25□□□□□ -0.61
TRIM48-201ENST00000417545 QTRT2Q9H974 415 aaKnown RBP11.25□□□□□ -0.61
TRIM48-201ENST00000417545 BCL9LQ86UU0 1499 aa11.25□□□□□ -0.61
TRIM48-201ENST00000417545 MAPK8IP3Q9UPT6 1336 aa11.24□□□□□ -0.61
TRIM48-201ENST00000417545 RGPD1P0DJD0 1748 aa11.24□□□□□ -0.61
TRIM48-201ENST00000417545 NBPF6Q5VWK0 638 aa11.24□□□□□ -0.61
TRIM48-201ENST00000417545 TCP11L2Q8N4U5 519 aa11.24□□□□□ -0.61
TRIM48-201ENST00000417545 NBPF4Q96M43 638 aa11.24□□□□□ -0.61
TRIM48-201ENST00000417545 EYA1Q99502 592 aa11.24□□□□□ -0.61
TRIM48-201ENST00000417545 CCDC184Q52MB2 194 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms