RNA–Protein interactions for RNA: ENST00000416380.6

YIPF3-203, Transcript of Yip1 domain family member 3, humanhuman

TSL 5

Gene YIPF3, Length 1,005 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YIPF3-203ENST00000416380 SOX12O15370 315 aa17.49■□□□□ 0.39
YIPF3-203ENST00000416380 SMG6Q86US8 1419 aaKnown RBP17.48■□□□□ 0.39
YIPF3-203ENST00000416380 KNSTRNQ9Y448 316 aa17.48■□□□□ 0.39
YIPF3-203ENST00000416380 ONECUT3O60422 494 aaPredicted RBP17.47■□□□□ 0.39
YIPF3-203ENST00000416380 RRS1Q15050 365 aaKnown RBP17.47■□□□□ 0.39
YIPF3-203ENST00000416380 IP6K1Q92551 441 aa17.47■□□□□ 0.39
YIPF3-203ENST00000416380 POLKQ9UBT6 870 aa17.47■□□□□ 0.39
YIPF3-203ENST00000416380 TRPC5Q9UL62 973 aaPredicted RBP17.47■□□□□ 0.39
YIPF3-203ENST00000416380 SPATA31A5Q5VU36 1347 aa17.47■□□□□ 0.39
YIPF3-203ENST00000416380 SPATA31A7Q8IWB4 1347 aa17.47■□□□□ 0.39
YIPF3-203ENST00000416380 LTN1O94822 1766 aa17.46■□□□□ 0.39
YIPF3-203ENST00000416380 LARP1Q6PKG0 1096 aaKnown RBP17.46■□□□□ 0.39
YIPF3-203ENST00000416380 GJD4Q96KN9 370 aaPredicted RBP17.46■□□□□ 0.39
YIPF3-203ENST00000416380 EMILIN1Q9Y6C2 1016 aa17.46■□□□□ 0.39
YIPF3-203ENST00000416380 HOXC9P31274 260 aa17.45■□□□□ 0.38
YIPF3-203ENST00000416380 CDK12Q9NYV4 1490 aaPredicted RBP17.44■□□□□ 0.38
YIPF3-203ENST00000416380 RTL1A6NKG5 1358 aa17.44■□□□□ 0.38
YIPF3-203ENST00000416380 KIF24Q5T7B8 1368 aa17.44■□□□□ 0.38
YIPF3-203ENST00000416380 BLMP54132 1417 aaPredicted RBP17.44■□□□□ 0.38
YIPF3-203ENST00000416380 ERBB3P21860 1342 aa17.44■□□□□ 0.38
YIPF3-203ENST00000416380 SPATA31A1Q5TZJ5 1347 aa17.44■□□□□ 0.38
YIPF3-203ENST00000416380 RGPD5Q99666 1765 aa17.43■□□□□ 0.38
YIPF3-203ENST00000416380 ZNF316A6NFI3 1004 aaPredicted RBP17.43■□□□□ 0.38
YIPF3-203ENST00000416380 RBM6P78332 1123 aaKnown RBP17.43■□□□□ 0.38
YIPF3-203ENST00000416380 RGS12O14924 1447 aa17.43■□□□□ 0.38
YIPF3-203ENST00000416380 WDR17Q8IZU2 1322 aa17.43■□□□□ 0.38
YIPF3-203ENST00000416380 DDX10Q13206 875 aaKnown RBP17.42■□□□□ 0.38
YIPF3-203ENST00000416380 HSP90AB2PQ58FF8 381 aa17.42■□□□□ 0.38
YIPF3-203ENST00000416380 INSRP06213 1382 aa17.41■□□□□ 0.38
YIPF3-203ENST00000416380 CRB1P82279 1406 aa17.41■□□□□ 0.38
YIPF3-203ENST00000416380 RXRBP28702 533 aa17.41■□□□□ 0.38
YIPF3-203ENST00000416380 EP400Q96L91 3159 aa17.41■□□□□ 0.38
YIPF3-203ENST00000416380 THSD7AQ9UPZ6 1657 aa17.4■□□□□ 0.38
YIPF3-203ENST00000416380 CC2D1BQ5T0F9 858 aaKnown RBP17.4■□□□□ 0.38
YIPF3-203ENST00000416380 MORC1Q86VD1 984 aa17.4■□□□□ 0.38
YIPF3-203ENST00000416380 FLT4P35916 1363 aa17.4■□□□□ 0.38
YIPF3-203ENST00000416380 DISP2A7MBM2 1401 aa17.39■□□□□ 0.38
YIPF3-203ENST00000416380 NCAPD2Q15021 1401 aa17.39■□□□□ 0.38
YIPF3-203ENST00000416380 ZBTB7CA1YPR0 619 aa17.39■□□□□ 0.37
YIPF3-203ENST00000416380 STRN4Q9NRL3 753 aa17.39■□□□□ 0.37
YIPF3-203ENST00000416380 PARD3Q8TEW0 1356 aa17.39■□□□□ 0.37
YIPF3-203ENST00000416380 TNNT2P45379 298 aaPredicted RBP17.38■□□□□ 0.37
YIPF3-203ENST00000416380 ANKRD24Q8TF21 1146 aa17.38■□□□□ 0.37
YIPF3-203ENST00000416380 CARD10Q9BWT7 1032 aa17.38■□□□□ 0.37
YIPF3-203ENST00000416380 FAM208AQ9UK61 1670 aaKnown RBP17.38■□□□□ 0.37
YIPF3-203ENST00000416380 BARGINQ6ZT62 677 aa17.37■□□□□ 0.37
YIPF3-203ENST00000416380 COL3A1P02461 1466 aaPredicted RBP17.37■□□□□ 0.37
YIPF3-203ENST00000416380 AMPHP49418 695 aa17.36■□□□□ 0.37
YIPF3-203ENST00000416380 MAP2P11137 1827 aaKnown RBP17.35■□□□□ 0.37
YIPF3-203ENST00000416380 EVA1CP58658 441 aa17.34■□□□□ 0.37
YIPF3-203ENST00000416380 FAM98CQ17RN3 349 aaKnown RBP17.34■□□□□ 0.37
YIPF3-203ENST00000416380 NBPF6Q5VWK0 638 aa17.34■□□□□ 0.37
YIPF3-203ENST00000416380 NBPF4Q96M43 638 aa17.34■□□□□ 0.37
YIPF3-203ENST00000416380 EIF4A2Q14240 407 aaKnown RBP17.33■□□□□ 0.36
YIPF3-203ENST00000416380 TCP11L2Q8N4U5 519 aa17.33■□□□□ 0.36
YIPF3-203ENST00000416380 THRAP3Q9Y2W1 955 aaKnown RBP17.33■□□□□ 0.36
YIPF3-203ENST00000416380 PPP2R1AP30153 589 aa17.32■□□□□ 0.36
YIPF3-203ENST00000416380 MTHFSP49914 203 aa17.32■□□□□ 0.36
YIPF3-203ENST00000416380 SEPT12Q8IYM1 358 aa17.32■□□□□ 0.36
YIPF3-203ENST00000416380 RGPD1P0DJD0 1748 aa17.31■□□□□ 0.36
YIPF3-203ENST00000416380 IL13P35225 146 aa17.31■□□□□ 0.36
YIPF3-203ENST00000416380 TOM1L2Q6ZVM7 507 aa17.31■□□□□ 0.36
YIPF3-203ENST00000416380 WNK3Q9BYP7 1800 aa17.31■□□□□ 0.36
YIPF3-203ENST00000416380 RGPD2P0DJD1 1756 aa17.3■□□□□ 0.36
YIPF3-203ENST00000416380 LTV1Q96GA3 475 aaPredicted RBP17.3■□□□□ 0.36
YIPF3-203ENST00000416380 USP35Q9P2H5 1018 aa17.3■□□□□ 0.36
YIPF3-203ENST00000416380 PARP4Q9UKK3 1724 aaKnown RBP17.3■□□□□ 0.36
YIPF3-203ENST00000416380 EYA1Q99502 592 aa17.29■□□□□ 0.36
YIPF3-203ENST00000416380 BRWD3Q6RI45 1802 aa17.28■□□□□ 0.36
YIPF3-203ENST00000416380 IGSF1Q8N6C5 1336 aa17.28■□□□□ 0.36
YIPF3-203ENST00000416380 MEGF6O75095 1541 aa17.28■□□□□ 0.36
YIPF3-203ENST00000416380 PPM1GO15355 546 aaPredicted RBP17.28■□□□□ 0.36
YIPF3-203ENST00000416380 NLRP2Q9NX02 1062 aa17.28■□□□□ 0.36
YIPF3-203ENST00000416380 CCDC9Q9Y3X0 531 aaKnown RBP17.28■□□□□ 0.36
YIPF3-203ENST00000416380 LRRC37A3O60309 1634 aa17.28■□□□□ 0.36
YIPF3-203ENST00000416380 CNGB1Q14028 1251 aaPredicted RBP17.27■□□□□ 0.36
YIPF3-203ENST00000416380 CSB-PGBD3P0DP91 1061 aa17.26■□□□□ 0.35
YIPF3-203ENST00000416380 USHBP1Q8N6Y0 703 aa17.26■□□□□ 0.35
YIPF3-203ENST00000416380 PRKRIP1Q9H875 184 aaPredicted RBP17.26■□□□□ 0.35
YIPF3-203ENST00000416380 KDRP35968 1356 aa17.26■□□□□ 0.35
YIPF3-203ENST00000416380 OVOS2A0A0G2JMS6 1433 aa17.24■□□□□ 0.35
YIPF3-203ENST00000416380 RALBP1Q15311 655 aa17.24■□□□□ 0.35
YIPF3-203ENST00000416380 TNS2Q63HR2 1409 aa17.22■□□□□ 0.35
YIPF3-203ENST00000416380 SHANK3Q9BYB0 1731 aa17.22■□□□□ 0.35
YIPF3-203ENST00000416380 IL2RBP14784 551 aa17.22■□□□□ 0.35
YIPF3-203ENST00000416380 AEBP1Q8IUX7 1158 aa17.22■□□□□ 0.35
YIPF3-203ENST00000416380 MARCH10Q8NA82 808 aaPredicted RBP17.22■□□□□ 0.35
YIPF3-203ENST00000416380 CDCA7Q9BWT1 371 aaPredicted RBP17.22■□□□□ 0.35
YIPF3-203ENST00000416380 BCL9O00512 1426 aa17.21■□□□□ 0.35
YIPF3-203ENST00000416380 KRT27Q7Z3Y8 459 aa17.21■□□□□ 0.35
YIPF3-203ENST00000416380 FAM182BQ5T319 152 aa17.2■□□□□ 0.34
YIPF3-203ENST00000416380 PLEKHG2Q9H7P9 1386 aa17.19■□□□□ 0.34
YIPF3-203ENST00000416380 DIAPH1O60610 1272 aaKnown RBP17.18■□□□□ 0.34
YIPF3-203ENST00000416380 DDB1Q16531 1140 aa17.18■□□□□ 0.34
YIPF3-203ENST00000416380 PKD1L3Q7Z443 1732 aa17.18■□□□□ 0.34
YIPF3-203ENST00000416380 MYBBP1AQ9BQG0 1328 aaKnown RBP17.18■□□□□ 0.34
YIPF3-203ENST00000416380 SOCS7O14512 581 aa17.17■□□□□ 0.34
YIPF3-203ENST00000416380 UPF1Q92900 1129 aaKnown RBP eCLIP17.16■□□□□ 0.34
YIPF3-203ENST00000416380 EXOC5O00471 708 aa17.15■□□□□ 0.34
YIPF3-203ENST00000416380 CYP27B1O15528 508 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms