RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 ZC3H6P61129 1189 aaKnown RBP12.93□□□□□ -0.34
RIF1-202ENST00000414861 COL18A1P39060 1754 aa12.93□□□□□ -0.34
RIF1-202ENST00000414861 KIF24Q5T7B8 1368 aa12.93□□□□□ -0.34
RIF1-202ENST00000414861 EIF4A2Q14240 407 aaKnown RBP12.93□□□□□ -0.34
RIF1-202ENST00000414861 HNRNPUQ00839 825 aaKnown RBP eCLIP12.92□□□□□ -0.34
RIF1-202ENST00000414861 LRRC59Q96AG4 307 aaKnown RBP12.92□□□□□ -0.34
RIF1-202ENST00000414861 U2SURPO15042 1029 aaKnown RBP12.92□□□□□ -0.34
RIF1-202ENST00000414861 RGPD2P0DJD1 1756 aa12.91□□□□□ -0.34
RIF1-202ENST00000414861 U2AF1L5P0DN76 240 aaPredicted RBP12.91□□□□□ -0.34
RIF1-202ENST00000414861 U2AF1Q01081 240 aaKnown RBP eCLIP12.91□□□□□ -0.345e-9■■■□□ 15.3
RIF1-202ENST00000414861 CCDC146Q8IYE0 955 aa12.91□□□□□ -0.34
RIF1-202ENST00000414861 KIAA0232Q92628 1395 aa12.91□□□□□ -0.34
RIF1-202ENST00000414861 IP6K1Q92551 441 aa12.9□□□□□ -0.34
RIF1-202ENST00000414861 NUDCQ9Y266 331 aa12.9□□□□□ -0.34
RIF1-202ENST00000414861 CPDO75976 1380 aa12.9□□□□□ -0.34
RIF1-202ENST00000414861 CHRNA2Q15822 529 aa12.89□□□□□ -0.35
RIF1-202ENST00000414861 AXIN2Q9Y2T1 843 aa12.89□□□□□ -0.35
RIF1-202ENST00000414861 LMO7Q8WWI1 1683 aa12.89□□□□□ -0.35
RIF1-202ENST00000414861 LTV1Q96GA3 475 aaPredicted RBP12.89□□□□□ -0.35
RIF1-202ENST00000414861 HMOX1P09601 288 aa12.88□□□□□ -0.35
RIF1-202ENST00000414861 ABCC6O95255 1503 aa12.88□□□□□ -0.35
RIF1-202ENST00000414861 HAP1P54257 671 aaPredicted RBP12.88□□□□□ -0.35
RIF1-202ENST00000414861 AEBP1Q8IUX7 1158 aa12.87□□□□□ -0.35
RIF1-202ENST00000414861 RSPH6AQ9H0K4 717 aa12.87□□□□□ -0.35
RIF1-202ENST00000414861 PRDM11Q9NQV5 511 aa12.86□□□□□ -0.35
RIF1-202ENST00000414861 CAMTA1Q9Y6Y1 1673 aa12.86□□□□□ -0.35
RIF1-202ENST00000414861 IGSF1Q8N6C5 1336 aa12.86□□□□□ -0.35
RIF1-202ENST00000414861 PLEKHF1Q96S99 279 aa12.86□□□□□ -0.35
RIF1-202ENST00000414861 EYA1Q99502 592 aa12.86□□□□□ -0.35
RIF1-202ENST00000414861 ERBB3P21860 1342 aa12.85□□□□□ -0.35
RIF1-202ENST00000414861 APAF1O14727 1248 aa12.85□□□□□ -0.35
RIF1-202ENST00000414861 PRKAR2BP31323 418 aa12.85□□□□□ -0.35
RIF1-202ENST00000414861 HSPA1LP34931 641 aa12.85□□□□□ -0.35
RIF1-202ENST00000414861 SULT6B1Q6IMI4 303 aa12.85□□□□□ -0.35
RIF1-202ENST00000414861 ANKRD24Q8TF21 1146 aa12.85□□□□□ -0.35
RIF1-202ENST00000414861 SALL2Q9Y467 1007 aaPredicted RBP12.85□□□□□ -0.35
RIF1-202ENST00000414861 ZBED9Q6R2W3 1325 aa12.84□□□□□ -0.35
RIF1-202ENST00000414861 RUNDC1Q96C34 613 aa12.84□□□□□ -0.35
RIF1-202ENST00000414861 KDRP35968 1356 aa12.84□□□□□ -0.35
RIF1-202ENST00000414861 FCHSD2O94868 740 aa12.84□□□□□ -0.35
RIF1-202ENST00000414861 USHBP1Q8N6Y0 703 aa12.84□□□□□ -0.35
RIF1-202ENST00000414861 FAM208AQ9UK61 1670 aaKnown RBP12.83□□□□□ -0.35
RIF1-202ENST00000414861 COL14A1Q05707 1796 aaKnown RBP12.83□□□□□ -0.36
RIF1-202ENST00000414861 FAM83GA6ND36 823 aa12.83□□□□□ -0.36
RIF1-202ENST00000414861 NBPF6Q5VWK0 638 aa12.83□□□□□ -0.36
RIF1-202ENST00000414861 NBPF4Q96M43 638 aa12.83□□□□□ -0.36
RIF1-202ENST00000414861 JCADQ9P266 1359 aa12.83□□□□□ -0.36
RIF1-202ENST00000414861 COL5A2P05997 1499 aaPredicted RBP12.83□□□□□ -0.36
RIF1-202ENST00000414861 PLCH1Q4KWH8 1693 aa12.83□□□□□ -0.36
RIF1-202ENST00000414861 NCAPD2Q15021 1401 aa12.82□□□□□ -0.36
RIF1-202ENST00000414861 TCP11L2Q8N4U5 519 aa12.82□□□□□ -0.36
RIF1-202ENST00000414861 PHACTR3Q96KR7 559 aa12.82□□□□□ -0.36
RIF1-202ENST00000414861 RRP7AQ9Y3A4 280 aaKnown RBP12.82□□□□□ -0.36
RIF1-202ENST00000414861 DLG5Q8TDM6 1919 aa12.82□□□□□ -0.36
RIF1-202ENST00000414861 NUTM2BA6NNL0 878 aaPredicted RBP12.81□□□□□ -0.36
RIF1-202ENST00000414861 NUTM2EB1AL46 878 aaPredicted RBP12.81□□□□□ -0.36
RIF1-202ENST00000414861 NUTM2AQ8IVF1 878 aaPredicted RBP12.81□□□□□ -0.36
RIF1-202ENST00000414861 ADAMTS2O95450 1211 aa12.81□□□□□ -0.36
RIF1-202ENST00000414861 MAPK8IP3Q9UPT6 1336 aa12.8□□□□□ -0.36
RIF1-202ENST00000414861 LRP6O75581 1613 aa12.8□□□□□ -0.36
RIF1-202ENST00000414861 NEUROD2Q15784 382 aa12.8□□□□□ -0.36
RIF1-202ENST00000414861 NRAPQ86VF7 1730 aa12.79□□□□□ -0.36
RIF1-202ENST00000414861 TMPOP42166 694 aaKnown RBP12.79□□□□□ -0.36
RIF1-202ENST00000414861 ZNF521Q96K83 1311 aa12.78□□□□□ -0.36
RIF1-202ENST00000414861 CSB-PGBD3P0DP91 1061 aa12.78□□□□□ -0.36
RIF1-202ENST00000414861 NLRP2Q9NX02 1062 aa12.78□□□□□ -0.36
RIF1-202ENST00000414861 PNNQ9H307 717 aaKnown RBP12.78□□□□□ -0.36
RIF1-202ENST00000414861 BTG4Q9NY30 223 aa12.78□□□□□ -0.36
RIF1-202ENST00000414861 WDR17Q8IZU2 1322 aa12.77□□□□□ -0.36
RIF1-202ENST00000414861 STRN4Q9NRL3 753 aa12.77□□□□□ -0.37
RIF1-202ENST00000414861 NWD2Q9ULI1 1742 aa12.76□□□□□ -0.37
RIF1-202ENST00000414861 LARP1Q6PKG0 1096 aaKnown RBP12.76□□□□□ -0.37
RIF1-202ENST00000414861 PHF23Q9BUL5 403 aaPredicted RBP12.76□□□□□ -0.37
RIF1-202ENST00000414861 SPATA31A6Q5VVP1 1343 aa12.76□□□□□ -0.37
RIF1-202ENST00000414861 MEGF6O75095 1541 aa12.76□□□□□ -0.37
RIF1-202ENST00000414861 CENPBP07199 599 aaPredicted RBP12.76□□□□□ -0.37
RIF1-202ENST00000414861 NFE2L2Q16236 605 aa12.76□□□□□ -0.37
RIF1-202ENST00000414861 NEFMP07197 916 aa12.75□□□□□ -0.37
RIF1-202ENST00000414861 WWC1Q8IX03 1113 aa12.75□□□□□ -0.37
RIF1-202ENST00000414861 CDCA7LQ96GN5 454 aa12.75□□□□□ -0.37
RIF1-202ENST00000414861 TRIM35Q9UPQ4 493 aa12.75□□□□□ -0.37
RIF1-202ENST00000414861 SLIT2O94813 1529 aa12.75□□□□□ -0.37
RIF1-202ENST00000414861 RIPK4P57078 832 aa12.75□□□□□ -0.37
RIF1-202ENST00000414861 MTHFSDQ2M296 383 aaKnown RBP12.74□□□□□ -0.37
RIF1-202ENST00000414861 TOM1L2Q6ZVM7 507 aa12.74□□□□□ -0.37
RIF1-202ENST00000414861 CRB1P82279 1406 aa12.74□□□□□ -0.37
RIF1-202ENST00000414861 EVA1CP58658 441 aa12.73□□□□□ -0.37
RIF1-202ENST00000414861 CCDC27Q2M243 656 aa12.73□□□□□ -0.37
RIF1-202ENST00000414861 NGEFQ8N5V2 710 aa12.73□□□□□ -0.37
RIF1-202ENST00000414861 C8orf37Q96NL8 207 aa12.73□□□□□ -0.37
RIF1-202ENST00000414861 SPINK5Q9NQ38 1064 aaPredicted RBP12.73□□□□□ -0.37
RIF1-202ENST00000414861 PKD1L3Q7Z443 1732 aa12.72□□□□□ -0.37
RIF1-202ENST00000414861 PARP4Q9UKK3 1724 aaKnown RBP12.72□□□□□ -0.37
RIF1-202ENST00000414861 WNK3Q9BYP7 1800 aa12.72□□□□□ -0.37
RIF1-202ENST00000414861 VIRMAQ69YN4 1812 aaKnown RBP12.72□□□□□ -0.37
RIF1-202ENST00000414861 NCBP3Q53F19 620 aaKnown RBP12.71□□□□□ -0.37
RIF1-202ENST00000414861 THUMPD2Q9BTF0 503 aaKnown RBP12.71□□□□□ -0.37
RIF1-202ENST00000414861 CARD10Q9BWT7 1032 aa12.71□□□□□ -0.37
RIF1-202ENST00000414861 USP35Q9P2H5 1018 aa12.71□□□□□ -0.37
RIF1-202ENST00000414861 SHANK3Q9BYB0 1731 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms