RNA–Protein interactions for RNA: ENST00000409031.5

SMPD4-202, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD4, Length 4,896 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-202ENST00000409031 TOP2BQ02880 1626 aa20.95■□□□□ 0.94
SMPD4-202ENST00000409031 PATL2C9JE40 543 aaKnown RBP20.95■□□□□ 0.94
SMPD4-202ENST00000409031 CAGE1Q8TC20 777 aa20.95■□□□□ 0.94
SMPD4-202ENST00000409031 SMARCE1Q969G3 411 aa20.95■□□□□ 0.94
SMPD4-202ENST00000409031 CFAP45Q9UL16 551 aa20.95■□□□□ 0.94
SMPD4-202ENST00000409031 PAXBP1Q9Y5B6 917 aa20.95■□□□□ 0.94
SMPD4-202ENST00000409031 GPRASP1Q5JY77 1395 aa20.95■□□□□ 0.94
SMPD4-202ENST00000409031 NCAPD3P42695 1498 aa20.95■□□□□ 0.94
SMPD4-202ENST00000409031 CBFA2T2O43439 604 aa20.95■□□□□ 0.94
SMPD4-202ENST00000409031 TEFQ10587 303 aa20.95■□□□□ 0.94
SMPD4-202ENST00000409031 CFAP70Q5T0N1 1121 aa20.95■□□□□ 0.94
SMPD4-202ENST00000409031 KRT222Q8N1A0 295 aa20.95■□□□□ 0.94
SMPD4-202ENST00000409031 CCDC191Q8NCU4 936 aa20.95■□□□□ 0.94
SMPD4-202ENST00000409031 RNF123Q5XPI4 1314 aa20.95■□□□□ 0.94
SMPD4-202ENST00000409031 RPRD2Q5VT52 1461 aaKnown RBP20.94■□□□□ 0.94
SMPD4-202ENST00000409031 NGDNQ8NEJ9 315 aaKnown RBP20.94■□□□□ 0.94
SMPD4-202ENST00000409031 NECTIN2Q92692 538 aa20.94■□□□□ 0.94
SMPD4-202ENST00000409031 C16orf45Q96MC5 204 aaPredicted RBP20.94■□□□□ 0.94
SMPD4-202ENST00000409031 STK38Q15208 465 aa20.94■□□□□ 0.94
SMPD4-202ENST00000409031 DAPK1P53355 1430 aa20.94■□□□□ 0.94
SMPD4-202ENST00000409031 BMS1Q14692 1282 aaKnown RBP20.93■□□□□ 0.94
SMPD4-202ENST00000409031 FILIP1LQ4L180 1135 aa20.93■□□□□ 0.94
SMPD4-202ENST00000409031 GAPVD1Q14C86 1478 aa20.93■□□□□ 0.94
SMPD4-202ENST00000409031 CCT4P50991 539 aaKnown RBP20.93■□□□□ 0.94
SMPD4-202ENST00000409031 SSH1Q8WYL5 1049 aa20.93■□□□□ 0.94
SMPD4-202ENST00000409031 UPF3BQ9BZI7 483 aaKnown RBP20.92■□□□□ 0.94
SMPD4-202ENST00000409031 KIF20AO95235 890 aa20.92■□□□□ 0.94
SMPD4-202ENST00000409031 SMC5Q8IY18 1101 aa20.92■□□□□ 0.94
SMPD4-202ENST00000409031 FSD1Q9BTV5 496 aa20.92■□□□□ 0.94
SMPD4-202ENST00000409031 DDX58O95786 925 aaKnown RBP20.92■□□□□ 0.94
SMPD4-202ENST00000409031 RAB3GAP1Q15042 981 aa20.92■□□□□ 0.94
SMPD4-202ENST00000409031 DNAJC2Q99543 621 aaKnown RBP20.92■□□□□ 0.94
SMPD4-202ENST00000409031 SLC12A5Q9H2X9 1139 aa20.92■□□□□ 0.94
SMPD4-202ENST00000409031 RBM25P49756 843 aaKnown RBP20.91■□□□□ 0.94
SMPD4-202ENST00000409031 ALDH1L2Q3SY69 923 aa20.91■□□□□ 0.94
SMPD4-202ENST00000409031 LTV1Q96GA3 475 aaPredicted RBP20.91■□□□□ 0.94
SMPD4-202ENST00000409031 RBM27Q9P2N5 1060 aaKnown RBP20.91■□□□□ 0.94
SMPD4-202ENST00000409031 CCDC9Q9Y3X0 531 aaKnown RBP20.91■□□□□ 0.94
SMPD4-202ENST00000409031 SFPQP23246 707 aaKnown RBP eCLIP20.91■□□□□ 0.94
SMPD4-202ENST00000409031 ME1P48163 572 aa20.91■□□□□ 0.94
SMPD4-202ENST00000409031 TBC1D9Q6ZT07 1266 aa20.91■□□□□ 0.94
SMPD4-202ENST00000409031 NOL10Q9BSC4 688 aaKnown RBP20.91■□□□□ 0.94
SMPD4-202ENST00000409031 CEBPZQ03701 1054 aaKnown RBP20.91■□□□□ 0.94
SMPD4-202ENST00000409031 SCAND2PQ9GZW5 306 aaPredicted RBP20.91■□□□□ 0.94
SMPD4-202ENST00000409031 JMYQ8N9B5 988 aa20.9■□□□□ 0.94
SMPD4-202ENST00000409031 GBP3Q9H0R5 595 aa20.9■□□□□ 0.94
SMPD4-202ENST00000409031 RALYLQ86SE5 291 aaKnown RBP20.9■□□□□ 0.94
SMPD4-202ENST00000409031 CLIP2Q9UDT6 1046 aa20.89■□□□□ 0.94
SMPD4-202ENST00000409031 TTLL5Q6EMB2 1281 aa20.89■□□□□ 0.93
SMPD4-202ENST00000409031 PDRG1Q9NUG6 133 aa20.89■□□□□ 0.93
SMPD4-202ENST00000409031 GTF2F1P35269 517 aaKnown RBP eCLIP20.89■□□□□ 0.937e-8■■□□□ 11.7
SMPD4-202ENST00000409031 TMPOP42166 694 aaKnown RBP20.89■□□□□ 0.93
SMPD4-202ENST00000409031 HDAC1Q13547 482 aaPredicted RBP20.89■□□□□ 0.93
SMPD4-202ENST00000409031 NOL7Q9UMY1 257 aaKnown RBP20.89■□□□□ 0.93
SMPD4-202ENST00000409031 CCDC30Q5VVM6 783 aa20.89■□□□□ 0.93
SMPD4-202ENST00000409031 FAM177A1Q8N128 213 aaPredicted RBP20.89■□□□□ 0.93
SMPD4-202ENST00000409031 DHX16O60231 1041 aaKnown RBP20.88■□□□□ 0.93
SMPD4-202ENST00000409031 CABP2Q9NPB3 220 aa20.88■□□□□ 0.93
SMPD4-202ENST00000409031 SMTNL1A8MU46 457 aa20.88■□□□□ 0.93
SMPD4-202ENST00000409031 TRERF1Q96PN7 1200 aa20.88■□□□□ 0.93
SMPD4-202ENST00000409031 SUPT6HQ7KZ85 1726 aaKnown RBP20.88■□□□□ 0.93
SMPD4-202ENST00000409031 CCDC102AQ96A19 550 aa20.88■□□□□ 0.93
SMPD4-202ENST00000409031 FEZ1Q99689 392 aa20.88■□□□□ 0.93
SMPD4-202ENST00000409031 RAD54L2Q9Y4B4 1467 aa20.88■□□□□ 0.93
SMPD4-202ENST00000409031 SKIDA1Q1XH10 827 aa20.87■□□□□ 0.93
SMPD4-202ENST00000409031 BLOC1S2Q6QNY1 142 aa20.87■□□□□ 0.93
SMPD4-202ENST00000409031 ZNF330Q9Y3S2 320 aaPredicted RBP20.87■□□□□ 0.93
SMPD4-202ENST00000409031 CLSTN1O94985 981 aa20.86■□□□□ 0.93
SMPD4-202ENST00000409031 PPFIBP1Q86W92 1011 aa20.86■□□□□ 0.93
SMPD4-202ENST00000409031 TRIM27P14373 513 aa20.86■□□□□ 0.93
SMPD4-202ENST00000409031 PCDHB15Q9Y5E8 787 aa20.86■□□□□ 0.93
SMPD4-202ENST00000409031 ZSCAN12O43309 604 aa20.86■□□□□ 0.93
SMPD4-202ENST00000409031 PRIM1P49642 420 aaKnown RBP20.86■□□□□ 0.93
SMPD4-202ENST00000409031 ABCC11Q96J66 1382 aa20.86■□□□□ 0.93
SMPD4-202ENST00000409031 SLC4A2P04920 1241 aa20.86■□□□□ 0.93
SMPD4-202ENST00000409031 ERC1Q8IUD2 1116 aa20.86■□□□□ 0.93
SMPD4-202ENST00000409031 CAVIN2O95810 425 aa20.85■□□□□ 0.93
SMPD4-202ENST00000409031 CAMK4Q16566 473 aa20.85■□□□□ 0.93
SMPD4-202ENST00000409031 HSP90AB3PQ58FF7 597 aa20.85■□□□□ 0.93
SMPD4-202ENST00000409031 C9orf84Q5VXU9 1444 aa20.85■□□□□ 0.93
SMPD4-202ENST00000409031 POLR3GO15318 223 aaPredicted RBP20.85■□□□□ 0.93
SMPD4-202ENST00000409031 NFXL1Q6ZNB6 911 aa20.85■□□□□ 0.93
SMPD4-202ENST00000409031 PIP4K2AP48426 406 aaPredicted RBP20.85■□□□□ 0.93
SMPD4-202ENST00000409031 NAP1L1P55209 391 aaKnown RBP20.85■□□□□ 0.93
SMPD4-202ENST00000409031 UBE2HP62256 183 aa20.85■□□□□ 0.93
SMPD4-202ENST00000409031 JAKMIP1Q96N16 626 aaKnown RBP20.85■□□□□ 0.93
SMPD4-202ENST00000409031 ANO10Q9NW15 660 aa20.85■□□□□ 0.93
SMPD4-202ENST00000409031 MLECQ14165 292 aa20.84■□□□□ 0.93
SMPD4-202ENST00000409031 FAM107BQ9H098 131 aa20.84■□□□□ 0.93
SMPD4-202ENST00000409031 DACH1Q9UI36 760 aa20.84■□□□□ 0.93
SMPD4-202ENST00000409031 HCLS1P14317 486 aaPredicted RBP20.84■□□□□ 0.93
SMPD4-202ENST00000409031 DDX19AQ9NUU7 478 aaKnown RBP20.84■□□□□ 0.93
SMPD4-202ENST00000409031 AQRO60306 1485 aaKnown RBP eCLIP20.84■□□□□ 0.937e-7■■■■□ 21.1
SMPD4-202ENST00000409031 URI1O94763 535 aaPredicted RBP20.84■□□□□ 0.93
SMPD4-202ENST00000409031 GSDMDP57764 484 aa20.84■□□□□ 0.93
SMPD4-202ENST00000409031 SH2B1Q9NRF2 756 aaPredicted RBP20.83■□□□□ 0.93
SMPD4-202ENST00000409031 PTPRGP23470 1445 aa20.83■□□□□ 0.93
SMPD4-202ENST00000409031 FCHSD2O94868 740 aa20.83■□□□□ 0.93
SMPD4-202ENST00000409031 C1orf141Q5JVX7 400 aa20.82■□□□□ 0.92
SMPD4-202ENST00000409031 CEP135Q66GS9 1140 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms