RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, human

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-208	ENST00000404484	CRYBG1	Q9Y4K1	1723 aa		27.92	■■■□□ 2.06
TPM1-208	ENST00000404484	ZC3H6	P61129	1189 aa	Known RBP	27.92	■■■□□ 2.06
TPM1-208	ENST00000404484	GC	P02774	474 aa		27.9	■■■□□ 2.06
TPM1-208	ENST00000404484	PRDM11	Q9NQV5	511 aa		27.9	■■■□□ 2.06
TPM1-208	ENST00000404484	USP31	Q70CQ4	1352 aa		27.9	■■■□□ 2.06
TPM1-208	ENST00000404484	ATRN	O75882	1429 aa		27.9	■■■□□ 2.06
TPM1-208	ENST00000404484	KIAA0232	Q92628	1395 aa		27.89	■■■□□ 2.06
TPM1-208	ENST00000404484	SMG6	Q86US8	1419 aa	Known RBP	27.89	■■■□□ 2.06
TPM1-208	ENST00000404484	BTG4	Q9NY30	223 aa		27.89	■■■□□ 2.05
TPM1-208	ENST00000404484	CHRNA2	Q15822	529 aa		27.88	■■■□□ 2.05
TPM1-208	ENST00000404484	ZRANB1	Q9UGI0	708 aa		27.87	■■■□□ 2.05
TPM1-208	ENST00000404484	NUDC	Q9Y266	331 aa		27.87	■■■□□ 2.05
TPM1-208	ENST00000404484	COL3A1	P02461	1466 aa	Predicted RBP	27.86	■■■□□ 2.05
TPM1-208	ENST00000404484	GJD4	Q96KN9	370 aa	Predicted RBP	27.86	■■■□□ 2.05
TPM1-208	ENST00000404484	POLK	Q9UBT6	870 aa		27.86	■■■□□ 2.05
TPM1-208	ENST00000404484	USP54	Q70EL1	1684 aa		27.85	■■■□□ 2.05
TPM1-208	ENST00000404484	CDK12	Q9NYV4	1490 aa	Predicted RBP	27.85	■■■□□ 2.05
TPM1-208	ENST00000404484	MAP2	P11137	1827 aa	Known RBP	27.85	■■■□□ 2.05
TPM1-208	ENST00000404484	PIK3C2A	O00443	1686 aa		27.85	■■■□□ 2.05
TPM1-208	ENST00000404484	PHRF1	Q9P1Y6	1649 aa	Known RBP	27.85	■■■□□ 2.05
TPM1-208	ENST00000404484	VPS72	Q15906	364 aa		27.83	■■■□□ 2.05
TPM1-208	ENST00000404484	CPD	O75976	1380 aa		27.81	■■■□□ 2.04
TPM1-208	ENST00000404484	PLCH1	Q4KWH8	1693 aa		27.81	■■■□□ 2.04
TPM1-208	ENST00000404484	DIAPH1	O60610	1272 aa	Known RBP	27.81	■■■□□ 2.04
TPM1-208	ENST00000404484	NGEF	Q8N5V2	710 aa		27.81	■■■□□ 2.04
TPM1-208	ENST00000404484	COL14A1	Q05707	1796 aa	Known RBP	27.81	■■■□□ 2.04
TPM1-208	ENST00000404484	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	27.8	■■■□□ 2.04
TPM1-208	ENST00000404484	NWD2	Q9ULI1	1742 aa		27.79	■■■□□ 2.04
TPM1-208	ENST00000404484	SLIT3	O75094	1523 aa		27.78	■■■□□ 2.04
TPM1-208	ENST00000404484	CCDC9	Q9Y3X0	531 aa	Known RBP	27.78	■■■□□ 2.04
TPM1-208	ENST00000404484	RGS12	O14924	1447 aa		27.78	■■■□□ 2.04
TPM1-208	ENST00000404484	SOX12	O15370	315 aa		27.77	■■■□□ 2.04
TPM1-208	ENST00000404484	PDE3B	Q13370	1112 aa		27.77	■■■□□ 2.04
TPM1-208	ENST00000404484	PPM1G	O15355	546 aa	Predicted RBP	27.77	■■■□□ 2.04
TPM1-208	ENST00000404484	KCNH5	Q8NCM2	988 aa		27.77	■■■□□ 2.04
TPM1-208	ENST00000404484	EMILIN1	Q9Y6C2	1016 aa		27.77	■■■□□ 2.04
TPM1-208	ENST00000404484	ZBTB7C	A1YPR0	619 aa		27.76	■■■□□ 2.03
TPM1-208	ENST00000404484	U2AF1L5	P0DN76	240 aa	Predicted RBP	27.76	■■■□□ 2.03
TPM1-208	ENST00000404484	U2AF1	Q01081	240 aa	Known RBP eCLIP	27.76	■■■□□ 2.03	6e-9	■■■■□ 21.7
TPM1-208	ENST00000404484	ARHGEF25	Q86VW2	580 aa		27.74	■■■□□ 2.03
TPM1-208	ENST00000404484	RUNDC1	Q96C34	613 aa		27.74	■■■□□ 2.03
TPM1-208	ENST00000404484	PNN	Q9H307	717 aa	Known RBP	27.74	■■■□□ 2.03
TPM1-208	ENST00000404484	STRN4	Q9NRL3	753 aa		27.74	■■■□□ 2.03
TPM1-208	ENST00000404484	RRS1	Q15050	365 aa	Known RBP	27.73	■■■□□ 2.03
TPM1-208	ENST00000404484	CCDC146	Q8IYE0	955 aa		27.73	■■■□□ 2.03
TPM1-208	ENST00000404484	U2SURP	O15042	1029 aa	Known RBP	27.73	■■■□□ 2.03
TPM1-208	ENST00000404484	FBLN1	P23142	703 aa		27.73	■■■□□ 2.03
TPM1-208	ENST00000404484	NRAP	Q86VF7	1730 aa		27.72	■■■□□ 2.03
TPM1-208	ENST00000404484	GLI3	P10071	1580 aa		27.72	■■■□□ 2.03
TPM1-208	ENST00000404484	EVA1C	P58658	441 aa		27.72	■■■□□ 2.03
TPM1-208	ENST00000404484	CAMTA1	Q9Y6Y1	1673 aa		27.72	■■■□□ 2.03
TPM1-208	ENST00000404484	SPATA31A5	Q5VU36	1347 aa		27.71	■■■□□ 2.03
TPM1-208	ENST00000404484	SPATA31A7	Q8IWB4	1347 aa		27.71	■■■□□ 2.03
TPM1-208	ENST00000404484	KIF24	Q5T7B8	1368 aa		27.71	■■■□□ 2.03
TPM1-208	ENST00000404484	ONECUT3	O60422	494 aa	Predicted RBP	27.69	■■■□□ 2.02
TPM1-208	ENST00000404484	AXIN2	Q9Y2T1	843 aa		27.69	■■■□□ 2.02
TPM1-208	ENST00000404484	APAF1	O14727	1248 aa		27.69	■■■□□ 2.02
TPM1-208	ENST00000404484	SALL2	Q9Y467	1007 aa	Predicted RBP	27.69	■■■□□ 2.02
TPM1-208	ENST00000404484	NCBP3	Q53F19	620 aa	Known RBP	27.67	■■■□□ 2.02
TPM1-208	ENST00000404484	LARP1	Q6PKG0	1096 aa	Known RBP	27.67	■■■□□ 2.02
TPM1-208	ENST00000404484	FLT4	P35916	1363 aa		27.67	■■■□□ 2.02
TPM1-208	ENST00000404484	LMO7	Q8WWI1	1683 aa		27.67	■■■□□ 2.02
TPM1-208	ENST00000404484	SENP3-EIF4A1	A0A087X0R7	540 aa		27.66	■■■□□ 2.02
TPM1-208	ENST00000404484	NFAT5	O94916	1531 aa		27.66	■■■□□ 2.02
TPM1-208	ENST00000404484	SEPT12	Q8IYM1	358 aa		27.66	■■■□□ 2.02
TPM1-208	ENST00000404484	MAP3K19	Q56UN5	1328 aa		27.65	■■■□□ 2.02
TPM1-208	ENST00000404484	SPATA31A1	Q5TZJ5	1347 aa		27.65	■■■□□ 2.02
TPM1-208	ENST00000404484	IL13	P35225	146 aa		27.65	■■■□□ 2.02
TPM1-208	ENST00000404484	FAM98C	Q17RN3	349 aa	Known RBP	27.65	■■■□□ 2.02
TPM1-208	ENST00000404484	GTF3C3	Q9Y5Q9	886 aa		27.65	■■■□□ 2.02
TPM1-208	ENST00000404484	FCHSD2	O94868	740 aa		27.64	■■■□□ 2.01
TPM1-208	ENST00000404484	PEAK1	Q9H792	1746 aa		27.63	■■■□□ 2.01
TPM1-208	ENST00000404484	USP35	Q9P2H5	1018 aa		27.63	■■■□□ 2.01
TPM1-208	ENST00000404484	MAPK8IP3	Q9UPT6	1336 aa		27.62	■■■□□ 2.01
TPM1-208	ENST00000404484	AMPH	P49418	695 aa		27.62	■■■□□ 2.01
TPM1-208	ENST00000404484	COL18A1	P39060	1754 aa		27.62	■■■□□ 2.01
TPM1-208	ENST00000404484	COL5A2	P05997	1499 aa	Predicted RBP	27.62	■■■□□ 2.01
TPM1-208	ENST00000404484	RTL1	A6NKG5	1358 aa		27.62	■■■□□ 2.01
TPM1-208	ENST00000404484	ZNF521	Q96K83	1311 aa		27.61	■■■□□ 2.01
TPM1-208	ENST00000404484	NEFM	P07197	916 aa		27.61	■■■□□ 2.01
TPM1-208	ENST00000404484	TCP11L2	Q8N4U5	519 aa		27.6	■■■□□ 2.01
TPM1-208	ENST00000404484	UPF1	Q92900	1129 aa	Known RBP eCLIP	27.6	■■■□□ 2.01
TPM1-208	ENST00000404484	PLEKHF1	Q96S99	279 aa		27.59	■■■□□ 2.01
TPM1-208	ENST00000404484		A0A0G2JS52	829 aa		27.58	■■■□□ 2.01
TPM1-208	ENST00000404484	MYT1	Q01538	1121 aa		27.58	■■■□□ 2.01
TPM1-208	ENST00000404484	EP400	Q96L91	3159 aa		27.57	■■■□□ 2
TPM1-208	ENST00000404484	GOLGA2	Q08379	1002 aa		27.57	■■■□□ 2
TPM1-208	ENST00000404484	EIF4A2	Q14240	407 aa	Known RBP	27.57	■■■□□ 2
TPM1-208	ENST00000404484	CCDC27	Q2M243	656 aa		27.57	■■■□□ 2
TPM1-208	ENST00000404484	RSPH6A	Q9H0K4	717 aa		27.56	■■■□□ 2
TPM1-208	ENST00000404484	HSP90AB2P	Q58FF8	381 aa		27.56	■■■□□ 2
TPM1-208	ENST00000404484	BARGIN	Q6ZT62	677 aa		27.55	■■■□□ 2
TPM1-208	ENST00000404484	TOM1L2	Q6ZVM7	507 aa		27.55	■■■□□ 2
TPM1-208	ENST00000404484	WDR17	Q8IZU2	1322 aa		27.54	■■■□□ 2
TPM1-208	ENST00000404484	NEFL	P07196	543 aa		27.54	■■■□□ 2
TPM1-208	ENST00000404484	CRB1	P82279	1406 aa		27.54	■■■□□ 2
TPM1-208	ENST00000404484	LTN1	O94822	1766 aa		27.53	■■■□□ 2
TPM1-208	ENST00000404484	HOXC9	P31274	260 aa		27.53	■■■□□ 2
TPM1-208	ENST00000404484	KRT27	Q7Z3Y8	459 aa		27.53	■■■□□ 2
TPM1-208	ENST00000404484	CSB-PGBD3	P0DP91	1061 aa		27.52	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms