RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 COLQQ9Y215 455 aaPredicted RBP13.08□□□□□ -0.32
VPS53-203ENST00000401468 SPATA31A3Q5VYP0 1347 aa13.08□□□□□ -0.32
VPS53-203ENST00000401468 TULP4Q9NRJ4 1543 aa13.08□□□□□ -0.32
VPS53-203ENST00000401468 NWD2Q9ULI1 1742 aa13.08□□□□□ -0.32
VPS53-203ENST00000401468 PHRF1Q9P1Y6 1649 aaKnown RBP13.07□□□□□ -0.32
VPS53-203ENST00000401468 ZEB1P37275 1124 aaPredicted RBP13.07□□□□□ -0.32
VPS53-203ENST00000401468 HAP1P54257 671 aaPredicted RBP13.07□□□□□ -0.32
VPS53-203ENST00000401468 SIRT1Q96EB6 747 aa13.07□□□□□ -0.32
VPS53-203ENST00000401468 BCL9LQ86UU0 1499 aa13.07□□□□□ -0.32
VPS53-203ENST00000401468 ROCK2O75116 1388 aaKnown RBP13.07□□□□□ -0.32
VPS53-203ENST00000401468 ATRNO75882 1429 aa13.06□□□□□ -0.32
VPS53-203ENST00000401468 RBM6P78332 1123 aaKnown RBP13.06□□□□□ -0.32
VPS53-203ENST00000401468 PSME1Q06323 249 aa13.06□□□□□ -0.32
VPS53-203ENST00000401468 SCUBE2Q9NQ36 999 aa13.06□□□□□ -0.32
VPS53-203ENST00000401468 CIZ1Q9ULV3 898 aaPredicted RBP13.06□□□□□ -0.32
VPS53-203ENST00000401468 RGPD5Q99666 1765 aa13.05□□□□□ -0.32
VPS53-203ENST00000401468 LRP5O75197 1615 aa13.05□□□□□ -0.32
VPS53-203ENST00000401468 NUTM2GQ5VZR2 741 aa13.04□□□□□ -0.32
VPS53-203ENST00000401468 ZNF467Q7Z7K2 595 aaPredicted RBP13.04□□□□□ -0.32
VPS53-203ENST00000401468 ATP7BP35670 1465 aa13.04□□□□□ -0.32
VPS53-203ENST00000401468 TRPC5Q9UL62 973 aaPredicted RBP13.03□□□□□ -0.32
VPS53-203ENST00000401468 SBNO2Q9Y2G9 1366 aa13.03□□□□□ -0.32
VPS53-203ENST00000401468 WASLO00401 505 aaPredicted RBP13.02□□□□□ -0.33
VPS53-203ENST00000401468 CHRM1P11229 460 aaPredicted RBP13.02□□□□□ -0.33
VPS53-203ENST00000401468 FNBP4Q8N3X1 1017 aaPredicted RBP13.02□□□□□ -0.33
VPS53-203ENST00000401468 ANKARQ7Z5J8 1434 aa13.02□□□□□ -0.33
VPS53-203ENST00000401468 COL14A1Q05707 1796 aaKnown RBP13.02□□□□□ -0.33
VPS53-203ENST00000401468 CCDC9Q9Y3X0 531 aaKnown RBP13.01□□□□□ -0.33
VPS53-203ENST00000401468 SLIT2O94813 1529 aa13.01□□□□□ -0.33
VPS53-203ENST00000401468 NGDNQ8NEJ9 315 aaKnown RBP13□□□□□ -0.33
VPS53-203ENST00000401468 CDK19Q9BWU1 502 aa13□□□□□ -0.33
VPS53-203ENST00000401468 AKAP12Q02952 1782 aa12.99□□□□□ -0.33
VPS53-203ENST00000401468 EIF3AQ14152 1382 aaKnown RBP12.99□□□□□ -0.33
VPS53-203ENST00000401468 USP47Q96K76 1375 aa12.99□□□□□ -0.33
VPS53-203ENST00000401468 PLCG2P16885 1265 aa12.99□□□□□ -0.33
VPS53-203ENST00000401468 NUDT16Q96DE0 195 aaKnown RBP12.99□□□□□ -0.33
VPS53-203ENST00000401468 CARD11Q9BXL7 1154 aa12.99□□□□□ -0.33
VPS53-203ENST00000401468 SBNO1A3KN83 1393 aa12.98□□□□□ -0.33
VPS53-203ENST00000401468 FAM83GA6ND36 823 aa12.98□□□□□ -0.33
VPS53-203ENST00000401468 IFFO2Q5TF58 517 aa12.98□□□□□ -0.33
VPS53-203ENST00000401468 GJD4Q96KN9 370 aaPredicted RBP12.98□□□□□ -0.33
VPS53-203ENST00000401468 UNC5CLQ8IV45 518 aa12.97□□□□□ -0.33
VPS53-203ENST00000401468 CABP2Q9NPB3 220 aa12.97□□□□□ -0.33
VPS53-203ENST00000401468 ARHGEF10O15013 1369 aa12.96□□□□□ -0.33
VPS53-203ENST00000401468 NRKQ7Z2Y5 1582 aa12.96□□□□□ -0.33
VPS53-203ENST00000401468 A0A0G2JS52 829 aa12.96□□□□□ -0.33
VPS53-203ENST00000401468 MYT1Q01538 1121 aa12.96□□□□□ -0.33
VPS53-203ENST00000401468 CHRNA2Q15822 529 aa12.96□□□□□ -0.33
VPS53-203ENST00000401468 ATAD2Q6PL18 1390 aa12.95□□□□□ -0.34
VPS53-203ENST00000401468 CENPJQ9HC77 1338 aaPredicted RBP12.95□□□□□ -0.34
VPS53-203ENST00000401468 SRPK2P78362 688 aaKnown RBP12.95□□□□□ -0.34
VPS53-203ENST00000401468 FAM182BQ5T319 152 aa12.95□□□□□ -0.34
VPS53-203ENST00000401468 BTG4Q9NY30 223 aa12.95□□□□□ -0.34
VPS53-203ENST00000401468 PIK3C2AO00443 1686 aa12.95□□□□□ -0.34
VPS53-203ENST00000401468 ACEP12821 1306 aa12.94□□□□□ -0.34
VPS53-203ENST00000401468 TESK2Q96S53 571 aa12.94□□□□□ -0.34
VPS53-203ENST00000401468 PPIP5K1Q6PFW1 1433 aa12.94□□□□□ -0.34
VPS53-203ENST00000401468 KAT6BQ8WYB5 2073 aa12.93□□□□□ -0.34
VPS53-203ENST00000401468 ZBTB7CA1YPR0 619 aa12.93□□□□□ -0.34
VPS53-203ENST00000401468 ZC3H6P61129 1189 aaKnown RBP12.93□□□□□ -0.34
VPS53-203ENST00000401468 IRX5P78411 483 aaPredicted RBP12.93□□□□□ -0.34
VPS53-203ENST00000401468 PSEN1P49768 467 aa12.92□□□□□ -0.34
VPS53-203ENST00000401468 EIF4G2P78344 907 aaKnown RBP eCLIP12.92□□□□□ -0.342e-8■■■■■ 33.8
VPS53-203ENST00000401468 GOLGA2Q08379 1002 aa12.92□□□□□ -0.34
VPS53-203ENST00000401468 FAM98CQ17RN3 349 aaKnown RBP12.92□□□□□ -0.34
VPS53-203ENST00000401468 SEPT12Q8IYM1 358 aa12.92□□□□□ -0.34
VPS53-203ENST00000401468 TNS1Q9HBL0 1735 aaKnown RBP12.92□□□□□ -0.34
VPS53-203ENST00000401468 STRN4Q9NRL3 753 aa12.92□□□□□ -0.34
VPS53-203ENST00000401468 WNK3Q9BYP7 1800 aa12.92□□□□□ -0.34
VPS53-203ENST00000401468 MYOM1P52179 1685 aa12.92□□□□□ -0.34
VPS53-203ENST00000401468 KIAA0232Q92628 1395 aa12.92□□□□□ -0.34
VPS53-203ENST00000401468 ST20-MTHFSA0A0A6YYL1 179 aa12.91□□□□□ -0.34
VPS53-203ENST00000401468 LTN1O94822 1766 aa12.91□□□□□ -0.34
VPS53-203ENST00000401468 MON2Q7Z3U7 1717 aa12.91□□□□□ -0.34
VPS53-203ENST00000401468 THSD7AQ9UPZ6 1657 aa12.9□□□□□ -0.34
VPS53-203ENST00000401468 SLC24A1O60721 1099 aa12.9□□□□□ -0.34
VPS53-203ENST00000401468 DEFB132Q7Z7B7 95 aa12.9□□□□□ -0.34
VPS53-203ENST00000401468 OCEL1Q9H607 264 aa12.9□□□□□ -0.34
VPS53-203ENST00000401468 PRDM11Q9NQV5 511 aa12.9□□□□□ -0.34
VPS53-203ENST00000401468 USP35Q9P2H5 1018 aa12.9□□□□□ -0.34
VPS53-203ENST00000401468 RGPD1P0DJD0 1748 aa12.9□□□□□ -0.34
VPS53-203ENST00000401468 LMO7Q8WWI1 1683 aa12.89□□□□□ -0.35
VPS53-203ENST00000401468 HSPA5P11021 654 aaKnown RBP12.89□□□□□ -0.35
VPS53-203ENST00000401468 VPS72Q15906 364 aa12.89□□□□□ -0.35
VPS53-203ENST00000401468 PUS7Q96PZ0 661 aaKnown RBP12.89□□□□□ -0.35
VPS53-203ENST00000401468 SBF2Q86WG5 1849 aa12.88□□□□□ -0.35
VPS53-203ENST00000401468 SOX12O15370 315 aa12.88□□□□□ -0.35
VPS53-203ENST00000401468 MKRN3Q13064 507 aaKnown RBP12.88□□□□□ -0.35
VPS53-203ENST00000401468 PDAP1Q13442 181 aaKnown RBP12.88□□□□□ -0.35
VPS53-203ENST00000401468 ABTB2Q8N961 1025 aa12.88□□□□□ -0.35
VPS53-203ENST00000401468 CABP1Q9NZU7 370 aa12.88□□□□□ -0.35
VPS53-203ENST00000401468 POLR3AO14802 1390 aaPredicted RBP12.88□□□□□ -0.35
VPS53-203ENST00000401468 CAMTA1Q9Y6Y1 1673 aa12.88□□□□□ -0.35
VPS53-203ENST00000401468 COL18A1P39060 1754 aa12.88□□□□□ -0.35
VPS53-203ENST00000401468 RGPD2P0DJD1 1756 aa12.86□□□□□ -0.35
VPS53-203ENST00000401468 KRT27Q7Z3Y8 459 aa12.85□□□□□ -0.35
VPS53-203ENST00000401468 EVC2Q86UK5 1308 aa12.85□□□□□ -0.35
VPS53-203ENST00000401468 PLEKHG3A1L390 1219 aa12.84□□□□□ -0.35
VPS53-203ENST00000401468 USP6P35125 1406 aa12.84□□□□□ -0.35
VPS53-203ENST00000401468 SPATA31A5Q5VU36 1347 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms