RNA–Protein interactions for RNA: ENST00000400540.5

LINC00544-201, long intergenic non-protein coding RNA 544, humanhuman

TSL 5 BASIC

Gene LINC00544, Length 1,031 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00544-201ENST00000400540 USP54Q70EL1 1684 aa17.19■□□□□ 0.34
LINC00544-201ENST00000400540 SIN3AQ96ST3 1273 aa17.18■□□□□ 0.34
LINC00544-201ENST00000400540 EVC2Q86UK5 1308 aa17.18■□□□□ 0.34
LINC00544-201ENST00000400540 TOM1L2Q6ZVM7 507 aa17.17■□□□□ 0.34
LINC00544-201ENST00000400540 PTF1AQ7RTS3 328 aa17.17■□□□□ 0.34
LINC00544-201ENST00000400540 SOX12O15370 315 aa17.16■□□□□ 0.34
LINC00544-201ENST00000400540 DDB1Q16531 1140 aa17.16■□□□□ 0.34
LINC00544-201ENST00000400540 NBPF14Q5TI25 921 aa17.16■□□□□ 0.34
LINC00544-201ENST00000400540 TTC21BQ7Z4L5 1316 aa17.16■□□□□ 0.34
LINC00544-201ENST00000400540 WDR17Q8IZU2 1322 aa17.16■□□□□ 0.34
LINC00544-201ENST00000400540 ROCK2O75116 1388 aaKnown RBP17.15■□□□□ 0.34
LINC00544-201ENST00000400540 MYOM1P52179 1685 aa17.13■□□□□ 0.33
LINC00544-201ENST00000400540 NHSQ6T4R5 1651 aa17.13■□□□□ 0.33
LINC00544-201ENST00000400540 ARHGEF25Q86VW2 580 aa17.13■□□□□ 0.33
LINC00544-201ENST00000400540 MARCH10Q8NA82 808 aaPredicted RBP17.13■□□□□ 0.33
LINC00544-201ENST00000400540 ANO8Q9HCE9 1232 aaPredicted RBP17.13■□□□□ 0.33
LINC00544-201ENST00000400540 ABCC6O95255 1503 aa17.12■□□□□ 0.33
LINC00544-201ENST00000400540 NEUROD1Q13562 356 aa17.12■□□□□ 0.33
LINC00544-201ENST00000400540 C11orf95C9JLR9 678 aaPredicted RBP17.11■□□□□ 0.33
LINC00544-201ENST00000400540 KTN1Q86UP2 1357 aaKnown RBP17.11■□□□□ 0.33
LINC00544-201ENST00000400540 UTRNP46939 3433 aa17.11■□□□□ 0.33
LINC00544-201ENST00000400540 PLSCR1O15162 318 aa17.1■□□□□ 0.33
LINC00544-201ENST00000400540 TTC21AQ8NDW8 1320 aa17.1■□□□□ 0.33
LINC00544-201ENST00000400540 CD163L1Q9NR16 1453 aa17.1■□□□□ 0.33
LINC00544-201ENST00000400540 BTAF1O14981 1849 aa17.1■□□□□ 0.33
LINC00544-201ENST00000400540 KCNQ2O43526 872 aa17.09■□□□□ 0.33
LINC00544-201ENST00000400540 CSB-PGBD3P0DP91 1061 aa17.09■□□□□ 0.33
LINC00544-201ENST00000400540 KCNH5Q8NCM2 988 aa17.09■□□□□ 0.33
LINC00544-201ENST00000400540 ZNF692Q9BU19 519 aaPredicted RBP17.09■□□□□ 0.33
LINC00544-201ENST00000400540 BCL11BQ9C0K0 894 aaPredicted RBP17.09■□□□□ 0.33
LINC00544-201ENST00000400540 PDGFDQ9GZP0 370 aaPredicted RBP17.09■□□□□ 0.33
LINC00544-201ENST00000400540 SPON1Q9HCB6 807 aa17.09■□□□□ 0.33
LINC00544-201ENST00000400540 BCL9O00512 1426 aa17.09■□□□□ 0.33
LINC00544-201ENST00000400540 TNS2Q63HR2 1409 aa17.08■□□□□ 0.32
LINC00544-201ENST00000400540 PROM2Q8N271 834 aa17.08■□□□□ 0.32
LINC00544-201ENST00000400540 CARD10Q9BWT7 1032 aa17.08■□□□□ 0.32
LINC00544-201ENST00000400540 PPP1R1BQ9UD71 204 aaPredicted RBP17.08■□□□□ 0.32
LINC00544-201ENST00000400540 CDCA7Q9BWT1 371 aaPredicted RBP17.06■□□□□ 0.32
LINC00544-201ENST00000400540 PAPPAQ13219 1627 aa17.06■□□□□ 0.32
LINC00544-201ENST00000400540 KAT6BQ8WYB5 2073 aa17.06■□□□□ 0.32
LINC00544-201ENST00000400540 NINLQ9Y2I6 1382 aa17.05■□□□□ 0.32
LINC00544-201ENST00000400540 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.05■□□□□ 0.32
LINC00544-201ENST00000400540 RGPD2P0DJD1 1756 aa17.05■□□□□ 0.32
LINC00544-201ENST00000400540 CCDC7Q96M83 1385 aa17.04■□□□□ 0.32
LINC00544-201ENST00000400540 SBNO2Q9Y2G9 1366 aa17.04■□□□□ 0.32
LINC00544-201ENST00000400540 NME9Q86XW9 330 aa17.04■□□□□ 0.32
LINC00544-201ENST00000400540 FAM208AQ9UK61 1670 aaKnown RBP17.04■□□□□ 0.32
LINC00544-201ENST00000400540 USP31Q70CQ4 1352 aa17.03■□□□□ 0.32
LINC00544-201ENST00000400540 YY1P25490 414 aa17.03■□□□□ 0.32
LINC00544-201ENST00000400540 ERBB3P21860 1342 aa17.02■□□□□ 0.32
LINC00544-201ENST00000400540 EXOC5O00471 708 aa17.02■□□□□ 0.32
LINC00544-201ENST00000400540 ZBTB7AO95365 584 aa17.02■□□□□ 0.32
LINC00544-201ENST00000400540 TXNRD1Q16881 649 aa17.02■□□□□ 0.32
LINC00544-201ENST00000400540 TUBGCP6Q96RT7 1819 aa17.02■□□□□ 0.31
LINC00544-201ENST00000400540 SHANK3Q9BYB0 1731 aa17.01■□□□□ 0.31
LINC00544-201ENST00000400540 DOT1LQ8TEK3 1739 aa17■□□□□ 0.31
LINC00544-201ENST00000400540 ACSBG1Q96GR2 724 aa17■□□□□ 0.31
LINC00544-201ENST00000400540 QSER1Q2KHR3 1735 aa16.99■□□□□ 0.31
LINC00544-201ENST00000400540 EDC4Q6P2E9 1401 aaKnown RBP16.99■□□□□ 0.31
LINC00544-201ENST00000400540 TMC1Q8TDI8 760 aa16.99■□□□□ 0.31
LINC00544-201ENST00000400540 CARD11Q9BXL7 1154 aa16.99■□□□□ 0.31
LINC00544-201ENST00000400540 A0A1W2PP64 1363 aa16.99■□□□□ 0.31
LINC00544-201ENST00000400540 PTGER2P43116 358 aa16.98■□□□□ 0.31
LINC00544-201ENST00000400540 SLC12A5Q9H2X9 1139 aa16.98■□□□□ 0.31
LINC00544-201ENST00000400540 NLRP2Q9NX02 1062 aa16.98■□□□□ 0.31
LINC00544-201ENST00000400540 STK32BQ9NY57 414 aa16.98■□□□□ 0.31
LINC00544-201ENST00000400540 ATF5Q9Y2D1 282 aaPredicted RBP16.98■□□□□ 0.31
LINC00544-201ENST00000400540 SLC15A2Q16348 729 aa16.97■□□□□ 0.31
LINC00544-201ENST00000400540 ANKRD24Q8TF21 1146 aa16.97■□□□□ 0.31
LINC00544-201ENST00000400540 CHD4Q14839 1912 aa16.97■□□□□ 0.31
LINC00544-201ENST00000400540 IL2RBP14784 551 aa16.95■□□□□ 0.3
LINC00544-201ENST00000400540 HDGFL2Q7Z4V5 671 aaPredicted RBP16.95■□□□□ 0.3
LINC00544-201ENST00000400540 LY75O60449 1722 aa16.95■□□□□ 0.3
LINC00544-201ENST00000400540 GOLGB1Q14789 3259 aaKnown RBP16.95■□□□□ 0.3
LINC00544-201ENST00000400540 COL24A1Q17RW2 1714 aa16.94■□□□□ 0.3
LINC00544-201ENST00000400540 DCAF8L1A6NGE4 600 aa16.93■□□□□ 0.3
LINC00544-201ENST00000400540 KIF20BQ96Q89 1820 aa16.91■□□□□ 0.3
LINC00544-201ENST00000400540 TONSLQ96HA7 1378 aa16.91■□□□□ 0.3
LINC00544-201ENST00000400540 ZNF827Q17R98 1081 aa16.91■□□□□ 0.3
LINC00544-201ENST00000400540 SGIP1Q9BQI5 828 aa16.91■□□□□ 0.3
LINC00544-201ENST00000400540 FHDC1Q9C0D6 1143 aaPredicted RBP16.91■□□□□ 0.3
LINC00544-201ENST00000400540 MTFR1LQ9H019 292 aa16.91■□□□□ 0.3
LINC00544-201ENST00000400540 LTV1Q96GA3 475 aaPredicted RBP16.9■□□□□ 0.3
LINC00544-201ENST00000400540 TERF2IPQ9NYB0 399 aa16.9■□□□□ 0.3
LINC00544-201ENST00000400540 LRRC4BQ9NT99 713 aa16.89■□□□□ 0.29
LINC00544-201ENST00000400540 FBLN1P23142 703 aa16.88■□□□□ 0.29
LINC00544-201ENST00000400540 IP6K1Q92551 441 aa16.88■□□□□ 0.29
LINC00544-201ENST00000400540 SYT17Q9BSW7 474 aa16.88■□□□□ 0.29
LINC00544-201ENST00000400540 MEGF6O75095 1541 aa16.87■□□□□ 0.29
LINC00544-201ENST00000400540 DDX54Q8TDD1 881 aaKnown RBP16.87■□□□□ 0.29
LINC00544-201ENST00000400540 TESK2Q96S53 571 aa16.87■□□□□ 0.29
LINC00544-201ENST00000400540 MAP3K19Q56UN5 1328 aa16.86■□□□□ 0.29
LINC00544-201ENST00000400540 ST20-MTHFSA0A0A6YYL1 179 aa16.85■□□□□ 0.29
LINC00544-201ENST00000400540 PUS7Q96PZ0 661 aaKnown RBP16.85■□□□□ 0.29
LINC00544-201ENST00000400540 NSD2O96028 1365 aa16.85■□□□□ 0.29
LINC00544-201ENST00000400540 C5P01031 1676 aa16.85■□□□□ 0.29
LINC00544-201ENST00000400540 TAF1LQ8IZX4 1826 aa16.84■□□□□ 0.29
LINC00544-201ENST00000400540 HOXC9P31274 260 aa16.84■□□□□ 0.29
LINC00544-201ENST00000400540 KCNQ4P56696 695 aa16.84■□□□□ 0.29
LINC00544-201ENST00000400540 AKT1S1Q96B36 256 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms