RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 ZBED9Q6R2W3 1325 aa15.48■□□□□ 0.07
SKA3-203ENST00000400018 USP31Q70CQ4 1352 aa15.48■□□□□ 0.07
SKA3-203ENST00000400018 USP35Q9P2H5 1018 aa15.47■□□□□ 0.07
SKA3-203ENST00000400018 PXDNQ92626 1479 aa15.47■□□□□ 0.07
SKA3-203ENST00000400018 ADAMTS2O95450 1211 aa15.46■□□□□ 0.07
SKA3-203ENST00000400018 NBPF6Q5VWK0 638 aa15.46■□□□□ 0.07
SKA3-203ENST00000400018 NBPF4Q96M43 638 aa15.46■□□□□ 0.07
SKA3-203ENST00000400018 PLEKHF1Q96S99 279 aa15.46■□□□□ 0.07
SKA3-203ENST00000400018 NUDCQ9Y266 331 aa15.46■□□□□ 0.07
SKA3-203ENST00000400018 PNPLA6Q8IY17 1366 aa15.46■□□□□ 0.07
SKA3-203ENST00000400018 DCCP43146 1447 aa15.46■□□□□ 0.07
SKA3-203ENST00000400018 RSPH6AQ9H0K4 717 aa15.46■□□□□ 0.07
SKA3-203ENST00000400018 MED1Q15648 1581 aaPredicted RBP15.46■□□□□ 0.07
SKA3-203ENST00000400018 BLMP54132 1417 aaPredicted RBP15.46■□□□□ 0.06
SKA3-203ENST00000400018 TRPM3Q9HCF6 1732 aaPredicted RBP15.45■□□□□ 0.06
SKA3-203ENST00000400018 KIAA0232Q92628 1395 aa15.45■□□□□ 0.06
SKA3-203ENST00000400018 AATKQ6ZMQ8 1374 aa15.45■□□□□ 0.06
SKA3-203ENST00000400018 RUNDC1Q96C34 613 aa15.45■□□□□ 0.06
SKA3-203ENST00000400018 LAS1LQ9Y4W2 734 aaKnown RBP15.45■□□□□ 0.06
SKA3-203ENST00000400018 ARHGEF25Q86VW2 580 aa15.44■□□□□ 0.06
SKA3-203ENST00000400018 STRN4Q9NRL3 753 aa15.44■□□□□ 0.06
SKA3-203ENST00000400018 ROBO1Q9Y6N7 1651 aa15.44■□□□□ 0.06
SKA3-203ENST00000400018 SOS2Q07890 1332 aaPredicted RBP15.43■□□□□ 0.06
SKA3-203ENST00000400018 RIPK4P57078 832 aa15.43■□□□□ 0.06
SKA3-203ENST00000400018 NCOA3Q9Y6Q9 1424 aa15.43■□□□□ 0.06
SKA3-203ENST00000400018 TSR2Q969E8 191 aaKnown RBP15.43■□□□□ 0.06
SKA3-203ENST00000400018 TNS3Q68CZ2 1445 aa15.42■□□□□ 0.06
SKA3-203ENST00000400018 FLT4P35916 1363 aa15.42■□□□□ 0.06
SKA3-203ENST00000400018 TMPOP42166 694 aaKnown RBP15.42■□□□□ 0.06
SKA3-203ENST00000400018 WWC1Q8IX03 1113 aa15.42■□□□□ 0.06
SKA3-203ENST00000400018 ANKRD24Q8TF21 1146 aa15.42■□□□□ 0.06
SKA3-203ENST00000400018 LTN1O94822 1766 aa15.42■□□□□ 0.06
SKA3-203ENST00000400018 MAPK8IP3Q9UPT6 1336 aa15.42■□□□□ 0.06
SKA3-203ENST00000400018 SBNO1A3KN83 1393 aa15.42■□□□□ 0.06
SKA3-203ENST00000400018 RGPD5Q99666 1765 aa15.41■□□□□ 0.06
SKA3-203ENST00000400018 RGPD2P0DJD1 1756 aa15.41■□□□□ 0.06
SKA3-203ENST00000400018 NFAT5O94916 1531 aa15.41■□□□□ 0.06
SKA3-203ENST00000400018 MCM10Q7L590 875 aa15.41■□□□□ 0.06
SKA3-203ENST00000400018 PRDM11Q9NQV5 511 aa15.41■□□□□ 0.06
SKA3-203ENST00000400018 MIS18AQ9NYP9 233 aa15.41■□□□□ 0.06
SKA3-203ENST00000400018 CSB-PGBD3P0DP91 1061 aa15.4■□□□□ 0.06
SKA3-203ENST00000400018 TRIM35Q9UPQ4 493 aa15.4■□□□□ 0.06
SKA3-203ENST00000400018 CDK12Q9NYV4 1490 aaPredicted RBP15.4■□□□□ 0.06
SKA3-203ENST00000400018 PLIN1O60240 522 aa15.4■□□□□ 0.06
SKA3-203ENST00000400018 IP6K1Q92551 441 aa15.4■□□□□ 0.06
SKA3-203ENST00000400018 NLRP2Q9NX02 1062 aa15.4■□□□□ 0.06
SKA3-203ENST00000400018 EP400Q96L91 3159 aa15.39■□□□□ 0.05
SKA3-203ENST00000400018 USP19O94966 1318 aa15.39■□□□□ 0.05
SKA3-203ENST00000400018 CERKQ8TCT0 537 aa15.39■□□□□ 0.05
SKA3-203ENST00000400018 ALS2Q96Q42 1657 aa15.39■□□□□ 0.05
SKA3-203ENST00000400018 TOM1O60784 492 aa15.38■□□□□ 0.05
SKA3-203ENST00000400018 KCNH5Q8NCM2 988 aa15.38■□□□□ 0.05
SKA3-203ENST00000400018 KIF1AQ12756 1690 aa15.38■□□□□ 0.05
SKA3-203ENST00000400018 MTHFSDQ2M296 383 aaKnown RBP15.38■□□□□ 0.05
SKA3-203ENST00000400018 ELL2O00472 640 aaPredicted RBP15.37■□□□□ 0.05
SKA3-203ENST00000400018 TCERG1O14776 1098 aaKnown RBP15.37■□□□□ 0.05
SKA3-203ENST00000400018 BCL2L13Q9BXK5 485 aa15.37■□□□□ 0.05
SKA3-203ENST00000400018 IQSEC2Q5JU85 1478 aa15.37■□□□□ 0.05
SKA3-203ENST00000400018 SMG6Q86US8 1419 aaKnown RBP15.37■□□□□ 0.05
SKA3-203ENST00000400018 FCHSD2O94868 740 aa15.36■□□□□ 0.05
SKA3-203ENST00000400018 FKBP8Q14318 412 aa15.36■□□□□ 0.05
SKA3-203ENST00000400018 ZNF521Q96K83 1311 aa15.35■□□□□ 0.05
SKA3-203ENST00000400018 KRT24Q2M2I5 525 aa15.35■□□□□ 0.05
SKA3-203ENST00000400018 INSRP06213 1382 aa15.35■□□□□ 0.05
SKA3-203ENST00000400018 GOLGA2Q08379 1002 aa15.35■□□□□ 0.05
SKA3-203ENST00000400018 LARP1Q6PKG0 1096 aaKnown RBP15.35■□□□□ 0.05
SKA3-203ENST00000400018 DUSP27Q5VZP5 1158 aa15.34■□□□□ 0.05
SKA3-203ENST00000400018 BTG4Q9NY30 223 aa15.34■□□□□ 0.05
SKA3-203ENST00000400018 HSPA1LP34931 641 aa15.34■□□□□ 0.05
SKA3-203ENST00000400018 ERBB3P21860 1342 aa15.33■□□□□ 0.04
SKA3-203ENST00000400018 IGSF1Q8N6C5 1336 aa15.33■□□□□ 0.04
SKA3-203ENST00000400018 SLIT3O75094 1523 aa15.32■□□□□ 0.04
SKA3-203ENST00000400018 SLFN5Q08AF3 891 aa15.31■□□□□ 0.04
SKA3-203ENST00000400018 NFE2L2Q16236 605 aa15.31■□□□□ 0.04
SKA3-203ENST00000400018 TOM1L2Q6ZVM7 507 aa15.31■□□□□ 0.04
SKA3-203ENST00000400018 BCAR3O75815 825 aa15.31■□□□□ 0.04
SKA3-203ENST00000400018 LGR6Q9HBX8 967 aa15.31■□□□□ 0.04
SKA3-203ENST00000400018 ARHGEF10O15013 1369 aa15.31■□□□□ 0.04
SKA3-203ENST00000400018 PHRF1Q9P1Y6 1649 aaKnown RBP15.31■□□□□ 0.04
SKA3-203ENST00000400018 MPRIPQ6WCQ1 1025 aa15.3■□□□□ 0.04
SKA3-203ENST00000400018 CAMTA1Q9Y6Y1 1673 aa15.3■□□□□ 0.04
SKA3-203ENST00000400018 NEFMP07197 916 aa15.3■□□□□ 0.04
SKA3-203ENST00000400018 EVA1CP58658 441 aa15.3■□□□□ 0.04
SKA3-203ENST00000400018 TNNQ9UQP3 1299 aa15.3■□□□□ 0.04
SKA3-203ENST00000400018 NHSL1Q5SYE7 1610 aa15.29■□□□□ 0.04
SKA3-203ENST00000400018 C8orf37Q96NL8 207 aa15.29■□□□□ 0.04
SKA3-203ENST00000400018 C20orf194Q5TEA3 1177 aa15.28■□□□□ 0.04
SKA3-203ENST00000400018 PHLPP1O60346 1717 aa15.28■□□□□ 0.04
SKA3-203ENST00000400018 TSPYL6Q8N831 410 aa15.28■□□□□ 0.04
SKA3-203ENST00000400018 EXOSC9Q06265 439 aaKnown RBP15.27■□□□□ 0.04
SKA3-203ENST00000400018 NECTIN2Q92692 538 aa15.27■□□□□ 0.03
SKA3-203ENST00000400018 DLG5Q8TDM6 1919 aa15.27■□□□□ 0.03
SKA3-203ENST00000400018 ERICH6Q7L0X2 663 aa15.26■□□□□ 0.03
SKA3-203ENST00000400018 RCAN3Q9UKA8 241 aa15.26■□□□□ 0.03
SKA3-203ENST00000400018 CCDC9Q9Y3X0 531 aaKnown RBP15.26■□□□□ 0.03
SKA3-203ENST00000400018 PHF23Q9BUL5 403 aaPredicted RBP15.26■□□□□ 0.03
SKA3-203ENST00000400018 RGPD1P0DJD0 1748 aa15.25■□□□□ 0.03
SKA3-203ENST00000400018 FANCIQ9NVI1 1328 aa15.25■□□□□ 0.03
SKA3-203ENST00000400018 ZNF530Q6P9A1 599 aaPredicted RBP15.25■□□□□ 0.03
SKA3-203ENST00000400018 IL17REQ8NFR9 667 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 110.3 ms