RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 CPSF1Q10570 1443 aaKnown RBP23.35■■□□□ 1.33
CUX2-202ENST00000397643 ZBTB7CA1YPR0 619 aa23.35■■□□□ 1.33
CUX2-202ENST00000397643 DDB1Q16531 1140 aa23.35■■□□□ 1.33
CUX2-202ENST00000397643 PPP1R1BQ9UD71 204 aaPredicted RBP23.35■■□□□ 1.33
CUX2-202ENST00000397643 AXIN2Q9Y2T1 843 aa23.35■■□□□ 1.33
CUX2-202ENST00000397643 WDR17Q8IZU2 1322 aa23.34■■□□□ 1.33
CUX2-202ENST00000397643 TOM1L2Q6ZVM7 507 aa23.34■■□□□ 1.33
CUX2-202ENST00000397643 BCL11BQ9C0K0 894 aaPredicted RBP23.34■■□□□ 1.33
CUX2-202ENST00000397643 PROM2Q8N271 834 aa23.33■■□□□ 1.33
CUX2-202ENST00000397643 MARCH10Q8NA82 808 aaPredicted RBP23.33■■□□□ 1.33
CUX2-202ENST00000397643 PDGFDQ9GZP0 370 aaPredicted RBP23.33■■□□□ 1.33
CUX2-202ENST00000397643 AKAP12Q02952 1782 aa23.32■■□□□ 1.32
CUX2-202ENST00000397643 RGPD5Q99666 1765 aa23.3■■□□□ 1.32
CUX2-202ENST00000397643 ARHGEF25Q86VW2 580 aa23.3■■□□□ 1.32
CUX2-202ENST00000397643 TRPM1Q7Z4N2 1603 aa23.3■■□□□ 1.32
CUX2-202ENST00000397643 MYOM1P52179 1685 aa23.29■■□□□ 1.32
CUX2-202ENST00000397643 NFAT5O94916 1531 aa23.28■■□□□ 1.32
CUX2-202ENST00000397643 UTRNP46939 3433 aa23.27■■□□□ 1.32
CUX2-202ENST00000397643 CDCA7Q9BWT1 371 aaPredicted RBP23.27■■□□□ 1.32
CUX2-202ENST00000397643 TTC21BQ7Z4L5 1316 aa23.27■■□□□ 1.32
CUX2-202ENST00000397643 PTGER2P43116 358 aa23.26■■□□□ 1.31
CUX2-202ENST00000397643 CARD10Q9BWT7 1032 aa23.26■■□□□ 1.31
CUX2-202ENST00000397643 EVC2Q86UK5 1308 aa23.25■■□□□ 1.31
CUX2-202ENST00000397643 ZBTB7AO95365 584 aa23.24■■□□□ 1.31
CUX2-202ENST00000397643 ABCC6O95255 1503 aa23.23■■□□□ 1.31
CUX2-202ENST00000397643 KCNH5Q8NCM2 988 aa23.23■■□□□ 1.31
CUX2-202ENST00000397643 TNS2Q63HR2 1409 aa23.23■■□□□ 1.31
CUX2-202ENST00000397643 TXNRD1Q16881 649 aa23.22■■□□□ 1.31
CUX2-202ENST00000397643 L3MBTL2Q969R5 705 aa23.22■■□□□ 1.31
CUX2-202ENST00000397643 DCAF8L1A6NGE4 600 aa23.21■■□□□ 1.31
CUX2-202ENST00000397643 ZNF692Q9BU19 519 aaPredicted RBP23.21■■□□□ 1.31
CUX2-202ENST00000397643 TTC21AQ8NDW8 1320 aa23.21■■□□□ 1.31
CUX2-202ENST00000397643 NHSQ6T4R5 1651 aa23.2■■□□□ 1.3
CUX2-202ENST00000397643 CCDC7Q96M83 1385 aa23.2■■□□□ 1.3
CUX2-202ENST00000397643 SOX12O15370 315 aa23.2■■□□□ 1.3
CUX2-202ENST00000397643 MON2Q7Z3U7 1717 aa23.19■■□□□ 1.3
CUX2-202ENST00000397643 CSB-PGBD3P0DP91 1061 aa23.19■■□□□ 1.3
CUX2-202ENST00000397643 SLC15A2Q16348 729 aa23.19■■□□□ 1.3
CUX2-202ENST00000397643 PAPPAQ13219 1627 aa23.19■■□□□ 1.3
CUX2-202ENST00000397643 STK32BQ9NY57 414 aa23.18■■□□□ 1.3
CUX2-202ENST00000397643 USP54Q70EL1 1684 aa23.18■■□□□ 1.3
CUX2-202ENST00000397643 EXOC5O00471 708 aa23.17■■□□□ 1.3
CUX2-202ENST00000397643 SGIP1Q9BQI5 828 aa23.17■■□□□ 1.3
CUX2-202ENST00000397643 ATF5Q9Y2D1 282 aaPredicted RBP23.17■■□□□ 1.3
CUX2-202ENST00000397643 KTN1Q86UP2 1357 aaKnown RBP23.14■■□□□ 1.3
CUX2-202ENST00000397643 ROCK2O75116 1388 aaKnown RBP23.14■■□□□ 1.29
CUX2-202ENST00000397643 USP31Q70CQ4 1352 aa23.14■■□□□ 1.29
CUX2-202ENST00000397643 SYT17Q9BSW7 474 aa23.13■■□□□ 1.29
CUX2-202ENST00000397643 FHDC1Q9C0D6 1143 aaPredicted RBP23.13■■□□□ 1.29
CUX2-202ENST00000397643 MTFR1LQ9H019 292 aa23.13■■□□□ 1.29
CUX2-202ENST00000397643 ERBB3P21860 1342 aa23.12■■□□□ 1.29
CUX2-202ENST00000397643 CD163L1Q9NR16 1453 aa23.12■■□□□ 1.29
CUX2-202ENST00000397643 ZNF784Q8NCA9 323 aaPredicted RBP23.11■■□□□ 1.29
CUX2-202ENST00000397643 BTAF1O14981 1849 aa23.1■■□□□ 1.29
CUX2-202ENST00000397643 LTN1O94822 1766 aa23.1■■□□□ 1.29
CUX2-202ENST00000397643 ACSBG1Q96GR2 724 aa23.1■■□□□ 1.29
CUX2-202ENST00000397643 SIN3AQ96ST3 1273 aa23.09■■□□□ 1.29
CUX2-202ENST00000397643 SBNO2Q9Y2G9 1366 aa23.09■■□□□ 1.29
CUX2-202ENST00000397643 MAP3K5Q99683 1374 aa23.06■■□□□ 1.28
CUX2-202ENST00000397643 NME9Q86XW9 330 aa23.06■■□□□ 1.28
CUX2-202ENST00000397643 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.06■■□□□ 1.28
CUX2-202ENST00000397643 CHD4Q14839 1912 aa23.06■■□□□ 1.28
CUX2-202ENST00000397643 IL2RBP14784 551 aa23.05■■□□□ 1.28
CUX2-202ENST00000397643 ZNF827Q17R98 1081 aa23.05■■□□□ 1.28
CUX2-202ENST00000397643 NLRP2Q9NX02 1062 aa23.05■■□□□ 1.28
CUX2-202ENST00000397643 LRRC4BQ9NT99 713 aa23.04■■□□□ 1.28
CUX2-202ENST00000397643 ARXQ96QS3 562 aa23.03■■□□□ 1.28
CUX2-202ENST00000397643 ANKRD24Q8TF21 1146 aa23.02■■□□□ 1.28
CUX2-202ENST00000397643 COL24A1Q17RW2 1714 aa23■■□□□ 1.27
CUX2-202ENST00000397643 QSER1Q2KHR3 1735 aa23■■□□□ 1.27
CUX2-202ENST00000397643 EDC4Q6P2E9 1401 aaKnown RBP22.99■■□□□ 1.27
CUX2-202ENST00000397643 AKT1S1Q96B36 256 aa22.99■■□□□ 1.27
CUX2-202ENST00000397643 NEUROD1Q13562 356 aa22.97■■□□□ 1.27
CUX2-202ENST00000397643 KAT6BQ8WYB5 2073 aa22.97■■□□□ 1.27
CUX2-202ENST00000397643 TUBGCP6Q96RT7 1819 aa22.96■■□□□ 1.27
CUX2-202ENST00000397643 SLC12A5Q9H2X9 1139 aa22.96■■□□□ 1.27
CUX2-202ENST00000397643 A0A1W2PP64 1363 aa22.96■■□□□ 1.27
CUX2-202ENST00000397643 FAM208AQ9UK61 1670 aaKnown RBP22.96■■□□□ 1.27
CUX2-202ENST00000397643 GOLGB1Q14789 3259 aaKnown RBP22.95■■□□□ 1.27
CUX2-202ENST00000397643 TMC1Q8TDI8 760 aa22.94■■□□□ 1.26
CUX2-202ENST00000397643 PNPLA7Q6ZV29 1317 aa22.93■■□□□ 1.26
CUX2-202ENST00000397643 SLC27A3Q5K4L6 730 aa22.93■■□□□ 1.26
CUX2-202ENST00000397643 HDGFL2Q7Z4V5 671 aaPredicted RBP22.93■■□□□ 1.26
CUX2-202ENST00000397643 SHANK3Q9BYB0 1731 aa22.93■■□□□ 1.26
CUX2-202ENST00000397643 NSD2O96028 1365 aa22.92■■□□□ 1.26
CUX2-202ENST00000397643 DOT1LQ8TEK3 1739 aa22.92■■□□□ 1.26
CUX2-202ENST00000397643 IP6K1Q92551 441 aa22.92■■□□□ 1.26
CUX2-202ENST00000397643 SLC16A10Q8TF71 515 aa22.91■■□□□ 1.26
CUX2-202ENST00000397643 CARD11Q9BXL7 1154 aa22.91■■□□□ 1.26
CUX2-202ENST00000397643 LY75O60449 1722 aa22.91■■□□□ 1.26
CUX2-202ENST00000397643 C1QTNF8P60827 252 aa22.9■■□□□ 1.26
CUX2-202ENST00000397643 ANKRD36BQ8N2N9 1353 aa22.89■■□□□ 1.26
CUX2-202ENST00000397643 DDX54Q8TDD1 881 aaKnown RBP22.89■■□□□ 1.25
CUX2-202ENST00000397643 KCNQ4P56696 695 aa22.88■■□□□ 1.25
CUX2-202ENST00000397643 TRIM26Q12899 539 aaPredicted RBP22.88■■□□□ 1.25
CUX2-202ENST00000397643 TERF2IPQ9NYB0 399 aa22.88■■□□□ 1.25
CUX2-202ENST00000397643 SENP3-EIF4A1A0A087X0R7 540 aa22.87■■□□□ 1.25
CUX2-202ENST00000397643 GPR162Q16538 588 aa22.87■■□□□ 1.25
CUX2-202ENST00000397643 PUS7Q96PZ0 661 aaKnown RBP22.87■■□□□ 1.25
CUX2-202ENST00000397643 MEGF6O75095 1541 aa22.87■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms