RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 SERPINC1P01008 464 aa12.14□□□□□ -0.47
LIMCH1-203ENST00000396595 CFTRP13569 1480 aa12.14□□□□□ -0.47
LIMCH1-203ENST00000396595 PRDM2Q13029 1718 aa12.14□□□□□ -0.47
LIMCH1-203ENST00000396595 HDGFL1Q5TGJ6 251 aa12.14□□□□□ -0.47
LIMCH1-203ENST00000396595 ZSCAN31Q96LW9 406 aaPredicted RBP12.14□□□□□ -0.47
LIMCH1-203ENST00000396595 ERICH4A6NGS2 130 aa12.14□□□□□ -0.47
LIMCH1-203ENST00000396595 ZNHIT6Q9NWK9 470 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-203ENST00000396595 LARP1BQ659C4 914 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-203ENST00000396595 ZNF526Q8TF50 670 aaPredicted RBP12.13□□□□□ -0.47
LIMCH1-203ENST00000396595 UQCRHLA0A096LP55 91 aa12.13□□□□□ -0.47
LIMCH1-203ENST00000396595 UQCRHP07919 91 aa12.13□□□□□ -0.47
LIMCH1-203ENST00000396595 RBM25P49756 843 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-203ENST00000396595 CEBPZQ03701 1054 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-203ENST00000396595 HSP90AB2PQ58FF8 381 aa12.13□□□□□ -0.47
LIMCH1-203ENST00000396595 AXDND1Q5T1B0 1012 aaPredicted RBP12.13□□□□□ -0.47
LIMCH1-203ENST00000396595 ERBINQ96RT1 1412 aa12.13□□□□□ -0.47
LIMCH1-203ENST00000396595 FYB1O15117 783 aa12.13□□□□□ -0.47
LIMCH1-203ENST00000396595 ME1P48163 572 aa12.13□□□□□ -0.47
LIMCH1-203ENST00000396595 SLC12A5Q9H2X9 1139 aa12.13□□□□□ -0.47
LIMCH1-203ENST00000396595 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.13□□□□□ -0.47
LIMCH1-203ENST00000396595 CBFA2T2O43439 604 aa12.12□□□□□ -0.47
LIMCH1-203ENST00000396595 ZSCAN30Q86W11 494 aa12.12□□□□□ -0.47
LIMCH1-203ENST00000396595 PPFIBP1Q86W92 1011 aa12.12□□□□□ -0.47
LIMCH1-203ENST00000396595 ERLIN1O75477 346 aa12.12□□□□□ -0.47
LIMCH1-203ENST00000396595 RPAP2Q8IXW5 612 aaPredicted RBP12.12□□□□□ -0.47
LIMCH1-203ENST00000396595 ARHGAP5Q13017 1502 aa12.12□□□□□ -0.47
LIMCH1-203ENST00000396595 BLOC1S2Q6QNY1 142 aa12.12□□□□□ -0.47
LIMCH1-203ENST00000396595 LUC7LQ9NQ29 371 aaKnown RBP12.12□□□□□ -0.47
LIMCH1-203ENST00000396595 SLC3A2P08195 630 aaKnown RBP12.11□□□□□ -0.47
LIMCH1-203ENST00000396595 BRPF1P55201 1214 aaPredicted RBP12.11□□□□□ -0.47
LIMCH1-203ENST00000396595 CEP57L1Q8IYX8 460 aa12.11□□□□□ -0.47
LIMCH1-203ENST00000396595 PPP6R1Q9UPN7 881 aa12.11□□□□□ -0.47
LIMCH1-203ENST00000396595 EHBP1L1Q8N3D4 1523 aa12.11□□□□□ -0.47
LIMCH1-203ENST00000396595 TNNT1P13805 278 aa12.11□□□□□ -0.47
LIMCH1-203ENST00000396595 CCDC158Q5M9N0 1113 aa12.11□□□□□ -0.47
LIMCH1-203ENST00000396595 TRIM22Q8IYM9 498 aa12.11□□□□□ -0.47
LIMCH1-203ENST00000396595 NUP62CLQ9H1M0 184 aa12.11□□□□□ -0.47
LIMCH1-203ENST00000396595 MSH5O43196 834 aa12.11□□□□□ -0.47
LIMCH1-203ENST00000396595 CDK5RAP3Q96JB5 506 aa12.11□□□□□ -0.47
LIMCH1-203ENST00000396595 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.11□□□□□ -0.47
LIMCH1-203ENST00000396595 CFAP45Q9UL16 551 aa12.11□□□□□ -0.47
LIMCH1-203ENST00000396595 EIF3JO75822 258 aaKnown RBP12.11□□□□□ -0.47
LIMCH1-203ENST00000396595 SLFN5Q08AF3 891 aa12.11□□□□□ -0.47
LIMCH1-203ENST00000396595 CCDC184Q52MB2 194 aa12.11□□□□□ -0.47
LIMCH1-203ENST00000396595 SULT6B1Q6IMI4 303 aa12.1□□□□□ -0.47
LIMCH1-203ENST00000396595 EFCAB5A4FU69 1503 aa12.1□□□□□ -0.47
LIMCH1-203ENST00000396595 NUTM2GQ5VZR2 741 aa12.1□□□□□ -0.47
LIMCH1-203ENST00000396595 TXLNBQ8N3L3 684 aa12.1□□□□□ -0.47
LIMCH1-203ENST00000396595 SPATA32Q96LK8 384 aa12.1□□□□□ -0.47
LIMCH1-203ENST00000396595 PRAM1Q96QH2 718 aa12.1□□□□□ -0.47
LIMCH1-203ENST00000396595 GPRASP1Q5JY77 1395 aa12.1□□□□□ -0.47
LIMCH1-203ENST00000396595 ZFYVE27Q5T4F4 411 aa12.1□□□□□ -0.47
LIMCH1-203ENST00000396595 C9orf84Q5VXU9 1444 aa12.1□□□□□ -0.47
LIMCH1-203ENST00000396595 STIM1Q13586 685 aa12.1□□□□□ -0.47
LIMCH1-203ENST00000396595 CCAR1Q8IX12 1150 aaKnown RBP12.1□□□□□ -0.47
LIMCH1-203ENST00000396595 ZNF692Q9BU19 519 aaPredicted RBP12.1□□□□□ -0.47
LIMCH1-203ENST00000396595 CALCOCO1Q9P1Z2 691 aa12.1□□□□□ -0.47
LIMCH1-203ENST00000396595 KDM4AO75164 1064 aa12.09□□□□□ -0.47
LIMCH1-203ENST00000396595 KRT32Q14532 448 aa12.09□□□□□ -0.47
LIMCH1-203ENST00000396595 STK3Q13188 491 aa12.09□□□□□ -0.47
LIMCH1-203ENST00000396595 PDCL2Q8N4E4 241 aa12.09□□□□□ -0.47
LIMCH1-203ENST00000396595 PRDM10Q9NQV6 1147 aa12.09□□□□□ -0.47
LIMCH1-203ENST00000396595 PDRG1Q9NUG6 133 aa12.09□□□□□ -0.47
LIMCH1-203ENST00000396595 CGNQ9P2M7 1197 aaKnown RBP12.09□□□□□ -0.47
LIMCH1-203ENST00000396595 TTC39AQ5SRH9 613 aa12.09□□□□□ -0.47
LIMCH1-203ENST00000396595 ABTB2Q8N961 1025 aa12.09□□□□□ -0.47
LIMCH1-203ENST00000396595 CENPHQ9H3R5 247 aa12.09□□□□□ -0.47
LIMCH1-203ENST00000396595 ERLIN2O94905 339 aa12.08□□□□□ -0.47
LIMCH1-203ENST00000396595 ATF3P18847 181 aa12.08□□□□□ -0.47
LIMCH1-203ENST00000396595 SKIDA1Q1XH10 827 aa12.08□□□□□ -0.47
LIMCH1-203ENST00000396595 AFAP1Q8N556 730 aa12.08□□□□□ -0.47
LIMCH1-203ENST00000396595 IPO4Q8TEX9 1081 aaKnown RBP12.08□□□□□ -0.48
LIMCH1-203ENST00000396595 SYNJ2O15056 1496 aa12.08□□□□□ -0.48
LIMCH1-203ENST00000396595 KIF6Q6ZMV9 814 aa12.08□□□□□ -0.48
LIMCH1-203ENST00000396595 MPNDQ8N594 471 aa12.08□□□□□ -0.48
LIMCH1-203ENST00000396595 GOLGA6L10A6NI86 522 aa12.08□□□□□ -0.48
LIMCH1-203ENST00000396595 TICAM2Q86XR7 235 aa12.08□□□□□ -0.48
LIMCH1-203ENST00000396595 NACAP1Q9BZK3 213 aa12.08□□□□□ -0.48
LIMCH1-203ENST00000396595 WDR97A6NE52 1622 aa12.08□□□□□ -0.48
LIMCH1-203ENST00000396595 PLEKHH2Q8IVE3 1493 aa12.08□□□□□ -0.48
LIMCH1-203ENST00000396595 CDKL5O76039 1030 aa12.07□□□□□ -0.48
LIMCH1-203ENST00000396595 FCHSD2O94868 740 aa12.07□□□□□ -0.48
LIMCH1-203ENST00000396595 JAKMIP1Q96N16 626 aaKnown RBP12.07□□□□□ -0.48
LIMCH1-203ENST00000396595 KIF2AO00139 706 aaPredicted RBP12.07□□□□□ -0.48
LIMCH1-203ENST00000396595 MTMR7Q9Y216 660 aa12.07□□□□□ -0.48
LIMCH1-203ENST00000396595 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.07□□□□□ -0.48
LIMCH1-203ENST00000396595 MAP3K11Q16584 847 aa12.07□□□□□ -0.48
LIMCH1-203ENST00000396595 CLGNO14967 610 aa12.06□□□□□ -0.48
LIMCH1-203ENST00000396595 DHX37Q8IY37 1157 aaKnown RBP12.06□□□□□ -0.48
LIMCH1-203ENST00000396595 UPF3BQ9BZI7 483 aaKnown RBP12.06□□□□□ -0.48
LIMCH1-203ENST00000396595 SMTNL1A8MU46 457 aa12.06□□□□□ -0.48
LIMCH1-203ENST00000396595 CCDC181Q5TID7 509 aa12.06□□□□□ -0.48
LIMCH1-203ENST00000396595 CTNNA3Q9UI47 895 aa12.06□□□□□ -0.48
LIMCH1-203ENST00000396595 CYB5RLQ6IPT4 315 aa12.06□□□□□ -0.48
LIMCH1-203ENST00000396595 ZSCAN25Q6NSZ9 544 aa12.06□□□□□ -0.48
LIMCH1-203ENST00000396595 GNL3LQ9NVN8 582 aaKnown RBP12.06□□□□□ -0.48
LIMCH1-203ENST00000396595 NOL7Q9UMY1 257 aaKnown RBP12.06□□□□□ -0.48
LIMCH1-203ENST00000396595 ANKRD30BQ9BXX2 1392 aa12.06□□□□□ -0.48
LIMCH1-203ENST00000396595 SRGAP3O43295 1099 aa12.06□□□□□ -0.48
LIMCH1-203ENST00000396595 KRT18P05783 430 aaKnown RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms