RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 STK11IPQ8N1F8 1099 aa16.47■□□□□ 0.23
COL4A3-202ENST00000396578 GBP3Q9H0R5 595 aa16.47■□□□□ 0.23
COL4A3-202ENST00000396578 CCDC158Q5M9N0 1113 aa16.46■□□□□ 0.23
COL4A3-202ENST00000396578 ESPNB1AK53 854 aa16.46■□□□□ 0.23
COL4A3-202ENST00000396578 MAP9Q49MG5 647 aa16.46■□□□□ 0.23
COL4A3-202ENST00000396578 CEP57L1Q8IYX8 460 aa16.46■□□□□ 0.23
COL4A3-202ENST00000396578 SPATA32Q96LK8 384 aa16.46■□□□□ 0.23
COL4A3-202ENST00000396578 TDRD9Q8NDG6 1382 aaKnown RBP16.46■□□□□ 0.23
COL4A3-202ENST00000396578 MAP2K1Q02750 393 aaPredicted RBP16.46■□□□□ 0.23
COL4A3-202ENST00000396578 ZNF397Q8NF99 534 aaPredicted RBP16.46■□□□□ 0.23
COL4A3-202ENST00000396578 UBXN4Q92575 508 aa16.46■□□□□ 0.23
COL4A3-202ENST00000396578 SEPT11Q9NVA2 429 aaKnown RBP16.46■□□□□ 0.23
COL4A3-202ENST00000396578 GOLGA6L10A0A0M3HER8 536 aa16.46■□□□□ 0.23
COL4A3-202ENST00000396578 CDKL5O76039 1030 aa16.46■□□□□ 0.23
COL4A3-202ENST00000396578 NUP62CLQ9H1M0 184 aa16.45■□□□□ 0.22
COL4A3-202ENST00000396578 NOL7Q9UMY1 257 aaKnown RBP16.45■□□□□ 0.22
COL4A3-202ENST00000396578 TMCO3Q6UWJ1 677 aa16.45■□□□□ 0.22
COL4A3-202ENST00000396578 KIF2AO00139 706 aaPredicted RBP16.45■□□□□ 0.22
COL4A3-202ENST00000396578 MCM3P25205 808 aa16.45■□□□□ 0.22
COL4A3-202ENST00000396578 UPF3BQ9BZI7 483 aaKnown RBP16.45■□□□□ 0.22
COL4A3-202ENST00000396578 GNL3LQ9NVN8 582 aaKnown RBP16.45■□□□□ 0.22
COL4A3-202ENST00000396578 PDIA4P13667 645 aaKnown RBP16.44■□□□□ 0.22
COL4A3-202ENST00000396578 PDE3AQ14432 1141 aa16.44■□□□□ 0.22
COL4A3-202ENST00000396578 MPNDQ8N594 471 aa16.44■□□□□ 0.22
COL4A3-202ENST00000396578 DDX11Q96FC9 970 aa16.44■□□□□ 0.22
COL4A3-202ENST00000396578 ARHGAP29Q52LW3 1261 aa16.44■□□□□ 0.22
COL4A3-202ENST00000396578 TAF4BQ92750 862 aa16.44■□□□□ 0.22
COL4A3-202ENST00000396578 NACAP1Q9BZK3 213 aa16.44■□□□□ 0.22
COL4A3-202ENST00000396578 MROH2BQ7Z745 1585 aa16.44■□□□□ 0.22
COL4A3-202ENST00000396578 MEX3CQ5U5Q3 659 aaKnown RBP16.43■□□□□ 0.22
COL4A3-202ENST00000396578 SMG6Q86US8 1419 aaKnown RBP16.43■□□□□ 0.22
COL4A3-202ENST00000396578 C1orf115Q9H7X2 142 aa16.43■□□□□ 0.22
COL4A3-202ENST00000396578 SRCIN1Q9C0H9 1055 aa16.43■□□□□ 0.22
COL4A3-202ENST00000396578 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.43■□□□□ 0.22
COL4A3-202ENST00000396578 NOB1Q9ULX3 412 aaKnown RBP16.42■□□□□ 0.22
COL4A3-202ENST00000396578 BMP2KQ9NSY1 1161 aaPredicted RBP16.42■□□□□ 0.22
COL4A3-202ENST00000396578 GAS2L2Q8NHY3 880 aa16.42■□□□□ 0.22
COL4A3-202ENST00000396578 CNNM1Q9NRU3 951 aa16.42■□□□□ 0.22
COL4A3-202ENST00000396578 CIZ1Q9ULV3 898 aaPredicted RBP16.42■□□□□ 0.22
COL4A3-202ENST00000396578 CASQ1P31415 396 aa16.41■□□□□ 0.22
COL4A3-202ENST00000396578 ADAMTS8Q9UP79 889 aa16.41■□□□□ 0.22
COL4A3-202ENST00000396578 CCDC57Q2TAC2 916 aa16.41■□□□□ 0.22
COL4A3-202ENST00000396578 NF2P35240 595 aa16.41■□□□□ 0.22
COL4A3-202ENST00000396578 ATP2B2Q01814 1243 aa16.41■□□□□ 0.22
COL4A3-202ENST00000396578 IMMTQ16891 758 aaKnown RBP16.41■□□□□ 0.22
COL4A3-202ENST00000396578 CCT4P50991 539 aaKnown RBP16.41■□□□□ 0.22
COL4A3-202ENST00000396578 EIF5P55010 431 aaKnown RBP16.41■□□□□ 0.22
COL4A3-202ENST00000396578 MAP3K11Q16584 847 aa16.4■□□□□ 0.22
COL4A3-202ENST00000396578 FILIP1Q7Z7B0 1213 aa16.4■□□□□ 0.22
COL4A3-202ENST00000396578 SOGA3Q5TF21 947 aa16.4■□□□□ 0.22
COL4A3-202ENST00000396578 SCAPERQ9BY12 1400 aa16.4■□□□□ 0.22
COL4A3-202ENST00000396578 PTPN14Q15678 1187 aa16.4■□□□□ 0.22
COL4A3-202ENST00000396578 ZSCAN30Q86W11 494 aa16.4■□□□□ 0.22
COL4A3-202ENST00000396578 MAPK8IP2Q13387 824 aaPredicted RBP16.4■□□□□ 0.22
COL4A3-202ENST00000396578 BACH2Q9BYV9 841 aa16.4■□□□□ 0.22
COL4A3-202ENST00000396578 RRBP1Q9P2E9 1410 aaKnown RBP16.4■□□□□ 0.22
COL4A3-202ENST00000396578 FAM107BQ9H098 131 aa16.4■□□□□ 0.22
COL4A3-202ENST00000396578 STAC3Q96MF2 364 aa16.39■□□□□ 0.21
COL4A3-202ENST00000396578 ZSCAN25Q6NSZ9 544 aa16.39■□□□□ 0.21
COL4A3-202ENST00000396578 CFAP100Q494V2 611 aa16.39■□□□□ 0.21
COL4A3-202ENST00000396578 ZSCAN12O43309 604 aa16.39■□□□□ 0.21
COL4A3-202ENST00000396578 KIF18AQ8NI77 898 aa16.39■□□□□ 0.21
COL4A3-202ENST00000396578 BLOC1S2Q6QNY1 142 aa16.39■□□□□ 0.21
COL4A3-202ENST00000396578 CALCOCO1Q9P1Z2 691 aa16.39■□□□□ 0.21
COL4A3-202ENST00000396578 MYOM3Q5VTT5 1437 aa16.39■□□□□ 0.21
COL4A3-202ENST00000396578 MTHFSP49914 203 aa16.39■□□□□ 0.21
COL4A3-202ENST00000396578 TWISTNBQ3B726 338 aaPredicted RBP16.39■□□□□ 0.21
COL4A3-202ENST00000396578 STAMBPO95630 424 aa16.38■□□□□ 0.21
COL4A3-202ENST00000396578 CEP131Q9UPN4 1083 aa16.38■□□□□ 0.21
COL4A3-202ENST00000396578 MICALCLQ6ZW33 695 aa16.38■□□□□ 0.21
COL4A3-202ENST00000396578 KIF5CO60282 957 aa16.38■□□□□ 0.21
COL4A3-202ENST00000396578 MCM4P33991 863 aa16.38■□□□□ 0.21
COL4A3-202ENST00000396578 AKNAQ7Z591 1439 aa16.38■□□□□ 0.21
COL4A3-202ENST00000396578 NUP133Q8WUM0 1156 aa16.38■□□□□ 0.21
COL4A3-202ENST00000396578 ZSCAN31Q96LW9 406 aaPredicted RBP16.38■□□□□ 0.21
COL4A3-202ENST00000396578 NEBLO76041 1014 aa16.38■□□□□ 0.21
COL4A3-202ENST00000396578 TCP11L2Q8N4U5 519 aa16.38■□□□□ 0.21
COL4A3-202ENST00000396578 PDRG1Q9NUG6 133 aa16.38■□□□□ 0.21
COL4A3-202ENST00000396578 CETN2P41208 172 aa16.37■□□□□ 0.21
COL4A3-202ENST00000396578 POTEJP0CG39 1038 aa16.37■□□□□ 0.21
COL4A3-202ENST00000396578 TRIM21P19474 475 aaKnown RBP16.37■□□□□ 0.21
COL4A3-202ENST00000396578 GGNBP2Q9H3C7 697 aa16.37■□□□□ 0.21
COL4A3-202ENST00000396578 CGNQ9P2M7 1197 aaKnown RBP16.37■□□□□ 0.21
COL4A3-202ENST00000396578 PPP6R1Q9UPN7 881 aa16.37■□□□□ 0.21
COL4A3-202ENST00000396578 SSR1P43307 286 aaKnown RBP16.37■□□□□ 0.21
COL4A3-202ENST00000396578 SPA17Q15506 151 aa16.37■□□□□ 0.21
COL4A3-202ENST00000396578 CCDC113Q9H0I3 377 aa16.37■□□□□ 0.21
COL4A3-202ENST00000396578 SYCE3A1L190 88 aa16.37■□□□□ 0.21
COL4A3-202ENST00000396578 WASF1Q92558 559 aa16.37■□□□□ 0.21
COL4A3-202ENST00000396578 SFPQP23246 707 aaKnown RBP eCLIP16.36■□□□□ 0.21
COL4A3-202ENST00000396578 MATR3P43243 847 aaKnown RBP eCLIP16.36■□□□□ 0.21
COL4A3-202ENST00000396578 NLRP2Q9NX02 1062 aa16.36■□□□□ 0.21
COL4A3-202ENST00000396578 KRT32Q14532 448 aa16.36■□□□□ 0.21
COL4A3-202ENST00000396578 CHD1LQ86WJ1 897 aa16.36■□□□□ 0.21
COL4A3-202ENST00000396578 MAP4K4O95819 1239 aaPredicted RBP16.36■□□□□ 0.21
COL4A3-202ENST00000396578 CEP63Q96MT8 703 aa16.36■□□□□ 0.21
COL4A3-202ENST00000396578 PPP1R12BO60237 982 aaPredicted RBP16.35■□□□□ 0.21
COL4A3-202ENST00000396578 FYCO1Q9BQS8 1478 aa16.35■□□□□ 0.21
COL4A3-202ENST00000396578 GCOM1H8Y6P7 765 aaPredicted RBP16.35■□□□□ 0.21
COL4A3-202ENST00000396578 MYZAPP0CAP1 466 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms