RNA–Protein interactions for RNA: ENST00000395198.7

HERC4-204, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HERC4, Length 4,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-204ENST00000395198 SVIPQ8NHG7 77 aa5.32□□□□□ -1.56
HERC4-204ENST00000395198 CALR3Q96L12 384 aaKnown RBP5.32□□□□□ -1.56
HERC4-204ENST00000395198 CSB-PGBD3P0DP91 1061 aa5.32□□□□□ -1.56
HERC4-204ENST00000395198 NUTM2GQ5VZR2 741 aa5.32□□□□□ -1.56
HERC4-204ENST00000395198 CXorf56Q9H5V9 222 aa5.32□□□□□ -1.56
HERC4-204ENST00000395198 RRM1P23921 792 aa5.32□□□□□ -1.56
HERC4-204ENST00000395198 CBLBQ13191 982 aa5.32□□□□□ -1.56
HERC4-204ENST00000395198 E2F4Q16254 413 aa5.32□□□□□ -1.56
HERC4-204ENST00000395198 TSR2Q969E8 191 aaKnown RBP5.32□□□□□ -1.56
HERC4-204ENST00000395198 CHMP4CQ96CF2 233 aa5.32□□□□□ -1.56
HERC4-204ENST00000395198 CUEDC1Q9NWM3 386 aaPredicted RBP5.32□□□□□ -1.56
HERC4-204ENST00000395198 TBC1D2BQ9UPU7 963 aa5.32□□□□□ -1.56
HERC4-204ENST00000395198 ZC3H12AQ5D1E8 599 aaKnown RBP5.32□□□□□ -1.56
HERC4-204ENST00000395198 AGBL1Q96MI9 1066 aa5.32□□□□□ -1.56
HERC4-204ENST00000395198 GEMIN8Q9NWZ8 242 aaKnown RBP5.32□□□□□ -1.56
HERC4-204ENST00000395198 DDX56Q9NY93 547 aaKnown RBP5.31□□□□□ -1.56
HERC4-204ENST00000395198 LARP1BQ659C4 914 aaKnown RBP5.31□□□□□ -1.56
HERC4-204ENST00000395198 RPAINQ86UA6 219 aa5.31□□□□□ -1.56
HERC4-204ENST00000395198 SLX1AQ9BQ83 275 aa5.31□□□□□ -1.56
HERC4-204ENST00000395198 TINF2Q9BSI4 451 aa5.31□□□□□ -1.56
HERC4-204ENST00000395198 IFT57Q9NWB7 429 aa5.31□□□□□ -1.56
HERC4-204ENST00000395198 CD53P19397 219 aa5.31□□□□□ -1.56
HERC4-204ENST00000395198 CCT2P78371 535 aaKnown RBP5.31□□□□□ -1.56
HERC4-204ENST00000395198 UBE4AQ14139 1066 aa5.31□□□□□ -1.56
HERC4-204ENST00000395198 MRPL42Q9Y6G3 142 aaKnown RBP5.31□□□□□ -1.56
HERC4-204ENST00000395198 ERCC5P28715 1186 aaPredicted RBP5.3□□□□□ -1.56
HERC4-204ENST00000395198 FLT3P36888 993 aa5.3□□□□□ -1.56
HERC4-204ENST00000395198 CAPN15O75808 1086 aa5.3□□□□□ -1.56
HERC4-204ENST00000395198 HDGFL1Q5TGJ6 251 aa5.3□□□□□ -1.56
HERC4-204ENST00000395198 PDILTQ8N807 584 aa5.3□□□□□ -1.56
HERC4-204ENST00000395198 TMC2Q8TDI7 906 aa5.3□□□□□ -1.56
HERC4-204ENST00000395198 SMARCA2P51531 1590 aa5.3□□□□□ -1.56
HERC4-204ENST00000395198 COQ9O75208 318 aa5.3□□□□□ -1.56
HERC4-204ENST00000395198 MICALL1Q8N3F8 863 aa5.3□□□□□ -1.56
HERC4-204ENST00000395198 CDC5LQ99459 802 aaKnown RBP5.3□□□□□ -1.56
HERC4-204ENST00000395198 TANGO6Q9C0B7 1094 aa5.3□□□□□ -1.56
HERC4-204ENST00000395198 ALDH8A1Q9H2A2 487 aaPredicted RBP5.3□□□□□ -1.56
HERC4-204ENST00000395198 YY1AP1Q9H869 796 aa5.3□□□□□ -1.56
HERC4-204ENST00000395198 PHF8Q9UPP1 1060 aa5.3□□□□□ -1.56
HERC4-204ENST00000395198 KCTD2Q14681 263 aa5.3□□□□□ -1.56
HERC4-204ENST00000395198 CASS4Q9NQ75 786 aa5.3□□□□□ -1.56
HERC4-204ENST00000395198 USP5P45974 858 aa5.29□□□□□ -1.56
HERC4-204ENST00000395198 JDP2Q8WYK2 163 aa5.29□□□□□ -1.56
HERC4-204ENST00000395198 CBFA2T2O43439 604 aa5.29□□□□□ -1.56
HERC4-204ENST00000395198 AMPD3Q01432 767 aa5.29□□□□□ -1.56
HERC4-204ENST00000395198 TSNAXIP1Q2TAA8 658 aa5.29□□□□□ -1.56
HERC4-204ENST00000395198 PODNQ7Z5L7 613 aa5.29□□□□□ -1.56
HERC4-204ENST00000395198 RETREG1Q9H6L5 497 aa5.29□□□□□ -1.56
HERC4-204ENST00000395198 PRSS47A8MTI9 375 aa5.29□□□□□ -1.56
HERC4-204ENST00000395198 TIMM44O43615 452 aa5.29□□□□□ -1.56
HERC4-204ENST00000395198 LDHAP00338 332 aaKnown RBP5.29□□□□□ -1.56
HERC4-204ENST00000395198 SATB1Q01826 763 aa5.29□□□□□ -1.56
HERC4-204ENST00000395198 ITFG2Q969R8 447 aa5.29□□□□□ -1.56
HERC4-204ENST00000395198 REPIN1Q9BWE0 567 aaKnown RBP5.29□□□□□ -1.56
HERC4-204ENST00000395198 GDPD2Q9HCC8 539 aa5.29□□□□□ -1.56
HERC4-204ENST00000395198 CWC25Q9NXE8 425 aaPredicted RBP5.29□□□□□ -1.56
HERC4-204ENST00000395198 FAM13BQ9NYF5 915 aa5.29□□□□□ -1.56
HERC4-204ENST00000395198 AMHR2Q16671 573 aa5.28□□□□□ -1.56
HERC4-204ENST00000395198 ALDH1L2Q3SY69 923 aa5.28□□□□□ -1.56
HERC4-204ENST00000395198 ZSCAN30Q86W11 494 aa5.28□□□□□ -1.56
HERC4-204ENST00000395198 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.28□□□□□ -1.563e-6■■■□□ 17.4
HERC4-204ENST00000395198 RANBP17Q9H2T7 1088 aaKnown RBP5.28□□□□□ -1.56
HERC4-204ENST00000395198 IFT122Q9HBG6 1241 aa5.28□□□□□ -1.56
HERC4-204ENST00000395198 MRVI1Q9Y6F6 885 aa5.28□□□□□ -1.56
HERC4-204ENST00000395198 VIL1P09327 827 aaKnown RBP5.28□□□□□ -1.56
HERC4-204ENST00000395198 CC2D1AQ6P1N0 951 aaPredicted RBP5.28□□□□□ -1.56
HERC4-204ENST00000395198 FBXO33Q7Z6M2 555 aa5.28□□□□□ -1.56
HERC4-204ENST00000395198 CCAR1Q8IX12 1150 aaKnown RBP5.28□□□□□ -1.56
HERC4-204ENST00000395198 PPP1R12AO14974 1030 aaPredicted RBP5.28□□□□□ -1.56
HERC4-204ENST00000395198 INHBEP58166 350 aa5.28□□□□□ -1.56
HERC4-204ENST00000395198 E2F5Q15329 346 aa5.28□□□□□ -1.56
HERC4-204ENST00000395198 CCDC93Q567U6 631 aa5.28□□□□□ -1.56
HERC4-204ENST00000395198 ARMC3Q5W041 872 aa5.28□□□□□ -1.56
HERC4-204ENST00000395198 ZNF746Q6NUN9 644 aaPredicted RBP5.28□□□□□ -1.56
HERC4-204ENST00000395198 ACRBPQ8NEB7 543 aa5.28□□□□□ -1.56
HERC4-204ENST00000395198 GJA3Q9Y6H8 435 aa5.28□□□□□ -1.56
HERC4-204ENST00000395198 DYTNA2CJ06 578 aa5.28□□□□□ -1.56
HERC4-204ENST00000395198 SRGNP10124 158 aa5.28□□□□□ -1.56
HERC4-204ENST00000395198 CCDC102AQ96A19 550 aa5.28□□□□□ -1.56
HERC4-204ENST00000395198 BACH2Q9BYV9 841 aa5.28□□□□□ -1.56
HERC4-204ENST00000395198 AVENQ9NQS1 362 aaPredicted RBP5.28□□□□□ -1.56
HERC4-204ENST00000395198 SCRIBQ14160 1630 aa5.27□□□□□ -1.57
HERC4-204ENST00000395198 PRC1O43663 620 aa5.27□□□□□ -1.57
HERC4-204ENST00000395198 SSR1P43307 286 aaKnown RBP5.27□□□□□ -1.57
HERC4-204ENST00000395198 PCMTD1Q96MG8 357 aaPredicted RBP5.27□□□□□ -1.57
HERC4-204ENST00000395198 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.27□□□□□ -1.57
HERC4-204ENST00000395198 U3KPZ7 1027 aaPredicted RBP5.27□□□□□ -1.57
HERC4-204ENST00000395198 TNFRSF10BO14763 440 aa5.27□□□□□ -1.57
HERC4-204ENST00000395198 CCDC70Q6NSX1 233 aa5.27□□□□□ -1.57
HERC4-204ENST00000395198 BRINP2Q9C0B6 783 aa5.27□□□□□ -1.57
HERC4-204ENST00000395198 PRKAG2Q9UGJ0 569 aa5.27□□□□□ -1.57
HERC4-204ENST00000395198 BICDL2A1A5D9 508 aa5.27□□□□□ -1.57
HERC4-204ENST00000395198 ANKRD33BA6NCL7 494 aa5.27□□□□□ -1.57
HERC4-204ENST00000395198 HIP1RO75146 1068 aa5.27□□□□□ -1.57
HERC4-204ENST00000395198 RGS20O76081 388 aa5.27□□□□□ -1.57
HERC4-204ENST00000395198 SYCP2LQ5T4T6 812 aa5.27□□□□□ -1.57
HERC4-204ENST00000395198 FILIP1Q7Z7B0 1213 aa5.27□□□□□ -1.57
HERC4-204ENST00000395198 BANK1Q8NDB2 785 aa5.27□□□□□ -1.57
HERC4-204ENST00000395198 IER2Q9BTL4 223 aa5.27□□□□□ -1.57
HERC4-204ENST00000395198 ISY1Q9ULR0 285 aaKnown RBP5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms