RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 OSCARQ8IYS5 282 aa15.12■□□□□ 0.01
CCDC88C-204ENST00000389857 SF3B2Q13435 895 aaKnown RBP15.12■□□□□ 0.01
CCDC88C-204ENST00000389857 SPC24Q8NBT2 197 aa15.12■□□□□ 0.01
CCDC88C-204ENST00000389857 BMP2KQ9NSY1 1161 aaPredicted RBP15.12■□□□□ 0.01
CCDC88C-204ENST00000389857 WDR33Q9C0J8 1336 aaKnown RBP15.12■□□□□ 0.01
CCDC88C-204ENST00000389857 LRRCC1Q9C099 1032 aa15.12■□□□□ 0.01
CCDC88C-204ENST00000389857 ME1P48163 572 aa15.11■□□□□ 0.01
CCDC88C-204ENST00000389857 TWISTNBQ3B726 338 aaPredicted RBP15.11■□□□□ 0.01
CCDC88C-204ENST00000389857 DNAI2Q9GZS0 605 aa15.11■□□□□ 0.01
CCDC88C-204ENST00000389857 SRCIN1Q9C0H9 1055 aa15.11■□□□□ 0.01
CCDC88C-204ENST00000389857 MTHFSP49914 203 aa15.11■□□□□ 0.01
CCDC88C-204ENST00000389857 CABP4P57796 275 aa15.11■□□□□ 0.01
CCDC88C-204ENST00000389857 MPHOSPH10O00566 681 aaKnown RBP15.1■□□□□ 0.01
CCDC88C-204ENST00000389857 NEBLO76041 1014 aa15.1■□□□□ 0.01
CCDC88C-204ENST00000389857 ESCO1Q5FWF5 840 aa15.1■□□□□ 0.01
CCDC88C-204ENST00000389857 FAM69CQ0P6D2 419 aa15.1■□□□□ 0.01
CCDC88C-204ENST00000389857 MATR3P43243 847 aaKnown RBP eCLIP15.1■□□□□ 0.01
CCDC88C-204ENST00000389857 KRT85P78386 507 aa15.1■□□□□ 0.01
CCDC88C-204ENST00000389857 JAKMIP3Q5VZ66 844 aa15.09■□□□□ 0.01
CCDC88C-204ENST00000389857 RBM5P52756 815 aaKnown RBP eCLIP15.09■□□□□ 0.01
CCDC88C-204ENST00000389857 SEPT11Q9NVA2 429 aaKnown RBP15.09■□□□□ 0.01
CCDC88C-204ENST00000389857 INCENPQ9NQS7 918 aa15.09■□□□□ 0.01
CCDC88C-204ENST00000389857 MPHOSPH8Q99549 860 aa15.09■□□□□ 0.01
CCDC88C-204ENST00000389857 WASF1Q92558 559 aa15.08■□□□□ 0.01
CCDC88C-204ENST00000389857 NOB1Q9ULX3 412 aaKnown RBP15.08■□□□□ 0.01
CCDC88C-204ENST00000389857 SPG7Q9UQ90 795 aa15.08■□□□□ 0.01
CCDC88C-204ENST00000389857 NUP133Q8WUM0 1156 aa15.08■□□□□ 0
CCDC88C-204ENST00000389857 CFAP45Q9UL16 551 aa15.08■□□□□ 0
CCDC88C-204ENST00000389857 STK3Q13188 491 aa15.08■□□□□ 0
CCDC88C-204ENST00000389857 SMARCA4P51532 1647 aa15.08■□□□□ 0
CCDC88C-204ENST00000389857 HSP90AB3PQ58FF7 597 aa15.08■□□□□ 0
CCDC88C-204ENST00000389857 PRKAR2BP31323 418 aa15.07■□□□□ 0
CCDC88C-204ENST00000389857 CEP57L1Q8IYX8 460 aa15.07■□□□□ 0
CCDC88C-204ENST00000389857 PDZRN3Q9UPQ7 1066 aa15.07■□□□□ 0
CCDC88C-204ENST00000389857 TAX1BP1Q86VP1 789 aa15.07■□□□□ 0
CCDC88C-204ENST00000389857 CTNNA3Q9UI47 895 aa15.07■□□□□ 0
CCDC88C-204ENST00000389857 POTEJP0CG39 1038 aa15.07■□□□□ 0
CCDC88C-204ENST00000389857 TCP11L2Q8N4U5 519 aa15.07■□□□□ 0
CCDC88C-204ENST00000389857 STRN4Q9NRL3 753 aa15.07■□□□□ 0
CCDC88C-204ENST00000389857 FGD6Q6ZV73 1430 aa15.07■□□□□ 0
CCDC88C-204ENST00000389857 GAPVD1Q14C86 1478 aa15.07■□□□□ 0
CCDC88C-204ENST00000389857 HDGFL1Q5TGJ6 251 aa15.07■□□□□ 0
CCDC88C-204ENST00000389857 CCDC112Q8NEF3 446 aa15.07■□□□□ 0
CCDC88C-204ENST00000389857 PDIA4P13667 645 aaKnown RBP15.07■□□□□ 0
CCDC88C-204ENST00000389857 CENPHQ9H3R5 247 aa15.07■□□□□ 0
CCDC88C-204ENST00000389857 HMGB2P26583 209 aaKnown RBP15.06■□□□□ 0
CCDC88C-204ENST00000389857 ZNF76P36508 570 aa15.06■□□□□ 0
CCDC88C-204ENST00000389857 ADAMTS8Q9UP79 889 aa15.06■□□□□ 0
CCDC88C-204ENST00000389857 SMTNL1A8MU46 457 aa15.06■□□□□ 0
CCDC88C-204ENST00000389857 CEP131Q9UPN4 1083 aa15.06■□□□□ 0
CCDC88C-204ENST00000389857 PDE3AQ14432 1141 aa15.06■□□□□ 0
CCDC88C-204ENST00000389857 ZNF397Q8NF99 534 aaPredicted RBP15.06■□□□□ 0
CCDC88C-204ENST00000389857 PPP1R1BQ9UD71 204 aaPredicted RBP15.06■□□□□ 0
CCDC88C-204ENST00000389857 SLC4A2P04920 1241 aa15.06■□□□□ 0
CCDC88C-204ENST00000389857 UBAC1Q9BSL1 405 aa15.05■□□□□ 0
CCDC88C-204ENST00000389857 C1orf115Q9H7X2 142 aa15.05■□□□□ 0
CCDC88C-204ENST00000389857 LARP1BQ659C4 914 aaKnown RBP15.05■□□□□ 0
CCDC88C-204ENST00000389857 K7ELQ4 463 aaPredicted RBP15.05■□□□□ -0
CCDC88C-204ENST00000389857 EXOSC9Q06265 439 aaKnown RBP15.05■□□□□ -0
CCDC88C-204ENST00000389857 STK11IPQ8N1F8 1099 aa15.05■□□□□ -0
CCDC88C-204ENST00000389857 ZSCAN31Q96LW9 406 aaPredicted RBP15.05■□□□□ -0
CCDC88C-204ENST00000389857 ANKRD50Q9ULJ7 1429 aa15.05■□□□□ -0
CCDC88C-204ENST00000389857 CCDC91Q7Z6B0 441 aa15.05■□□□□ -0
CCDC88C-204ENST00000389857 KRT32Q14532 448 aa15.05■□□□□ -0
CCDC88C-204ENST00000389857 TDO2P48775 406 aa15.04■□□□□ -0
CCDC88C-204ENST00000389857 TAF4BQ92750 862 aa15.04■□□□□ -0
CCDC88C-204ENST00000389857 KIAA1328Q86T90 577 aa15.04■□□□□ -0
CCDC88C-204ENST00000389857 SPATA32Q96LK8 384 aa15.04■□□□□ -0
CCDC88C-204ENST00000389857 SIL1Q9H173 461 aa15.04■□□□□ -0
CCDC88C-204ENST00000389857 USP8P40818 1118 aa15.04■□□□□ -0
CCDC88C-204ENST00000389857 TMEM132EQ6IEE7 984 aa15.04■□□□□ -0
CCDC88C-204ENST00000389857 PPP1R12BO60237 982 aaPredicted RBP15.03■□□□□ -0
CCDC88C-204ENST00000389857 CCDC148Q8NFR7 591 aa15.03■□□□□ -0
CCDC88C-204ENST00000389857 CETN2P41208 172 aa15.03■□□□□ -0
CCDC88C-204ENST00000389857 BLOC1S2Q6QNY1 142 aa15.03■□□□□ -0
CCDC88C-204ENST00000389857 FKBP4Q02790 459 aaKnown RBP eCLIP15.03■□□□□ -0
CCDC88C-204ENST00000389857 ZNF692Q9BU19 519 aaPredicted RBP15.03■□□□□ -0
CCDC88C-204ENST00000389857 PDRG1Q9NUG6 133 aa15.03■□□□□ -0
CCDC88C-204ENST00000389857 PPP2R1AP30153 589 aa15.03■□□□□ -0
CCDC88C-204ENST00000389857 TNIP1Q15025 636 aa15.03■□□□□ -0
CCDC88C-204ENST00000389857 SSBP05455 408 aaKnown RBP eCLIP15.02■□□□□ -0
CCDC88C-204ENST00000389857 TOM1L2Q6ZVM7 507 aa15.02■□□□□ -0
CCDC88C-204ENST00000389857 ZSCAN29Q8IWY8 852 aaPredicted RBP15.02■□□□□ -0
CCDC88C-204ENST00000389857 PROSER2Q86WR7 435 aaPredicted RBP15.02■□□□□ -0
CCDC88C-204ENST00000389857 SLC26A8Q96RN1 970 aa15.02■□□□□ -0
CCDC88C-204ENST00000389857 LRRFIP2Q9Y608 721 aaKnown RBP15.02■□□□□ -0
CCDC88C-204ENST00000389857 EPB41L2O43491 1005 aaKnown RBP15.02□□□□□ -0.01
CCDC88C-204ENST00000389857 CCDC97Q96F63 343 aaPredicted RBP15.02□□□□□ -0.01
CCDC88C-204ENST00000389857 ZNF287Q9HBT7 754 aa15.02□□□□□ -0.01
CCDC88C-204ENST00000389857 AACSQ86V21 672 aa15.02□□□□□ -0.01
CCDC88C-204ENST00000389857 FAM193AP78312 1265 aa15.02□□□□□ -0.01
CCDC88C-204ENST00000389857 FAM177A1Q8N128 213 aaPredicted RBP15.01□□□□□ -0.01
CCDC88C-204ENST00000389857 MAP4K4O95819 1239 aaPredicted RBP15.01□□□□□ -0.01
CCDC88C-204ENST00000389857 MYL6BP14649 208 aa15.01□□□□□ -0.01
CCDC88C-204ENST00000389857 EIF5P55010 431 aaKnown RBP15.01□□□□□ -0.01
CCDC88C-204ENST00000389857 PPP6R1Q9UPN7 881 aa15.01□□□□□ -0.01
CCDC88C-204ENST00000389857 UPF3BQ9BZI7 483 aaKnown RBP15□□□□□ -0.01
CCDC88C-204ENST00000389857 NUP62CLQ9H1M0 184 aa15□□□□□ -0.01
CCDC88C-204ENST00000389857 SSR1P43307 286 aaKnown RBP15□□□□□ -0.01
CCDC88C-204ENST00000389857 TXNDC2Q86VQ3 553 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms