RNA–Protein interactions for RNA: ENST00000379989.6

CDKL5-201, Transcript of cyclin dependent kinase like 5, humanhuman

TSL 1 (best) BASIC

Gene CDKL5, Length 3,463 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5-201ENST00000379989 RAPGEF3O95398 923 aa9.28□□□□□ -0.92
CDKL5-201ENST00000379989 TRIM34Q9BYJ4 488 aa9.28□□□□□ -0.92
CDKL5-201ENST00000379989 ATAD2Q6PL18 1390 aa9.27□□□□□ -0.92
CDKL5-201ENST00000379989 TULP2O00295 520 aa9.27□□□□□ -0.93
CDKL5-201ENST00000379989 GTF2F1P35269 517 aaKnown RBP eCLIP9.27□□□□□ -0.932e-6■■■■□ 23.7
CDKL5-201ENST00000379989 EVC2Q86UK5 1308 aa9.27□□□□□ -0.93
CDKL5-201ENST00000379989 ADGRF5Q8IZF2 1346 aa9.27□□□□□ -0.93
CDKL5-201ENST00000379989 MCM5P33992 734 aa9.26□□□□□ -0.93
CDKL5-201ENST00000379989 CNKSR2Q8WXI2 1034 aa9.26□□□□□ -0.93
CDKL5-201ENST00000379989 ANKRD26Q9UPS8 1709 aa9.26□□□□□ -0.93
CDKL5-201ENST00000379989 HOMEZQ8IX15 550 aa9.26□□□□□ -0.93
CDKL5-201ENST00000379989 SKOR2Q2VWA4 1001 aaPredicted RBP9.26□□□□□ -0.93
CDKL5-201ENST00000379989 YY1AP1Q9H869 796 aa9.26□□□□□ -0.93
CDKL5-201ENST00000379989 POLR3AO14802 1390 aaPredicted RBP9.25□□□□□ -0.93
CDKL5-201ENST00000379989 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.25□□□□□ -0.93
CDKL5-201ENST00000379989 FAM177BA6PVY3 158 aa9.25□□□□□ -0.93
CDKL5-201ENST00000379989 TIGD1Q96MW7 591 aa9.25□□□□□ -0.93
CDKL5-201ENST00000379989 GEMIN8Q9NWZ8 242 aaKnown RBP9.25□□□□□ -0.93
CDKL5-201ENST00000379989 DIP2AQ14689 1571 aa9.25□□□□□ -0.93
CDKL5-201ENST00000379989 CGNL1Q0VF96 1302 aa9.25□□□□□ -0.93
CDKL5-201ENST00000379989 U2AF2P26368 475 aaKnown RBP eCLIP9.25□□□□□ -0.93
CDKL5-201ENST00000379989 ALKQ9UM73 1620 aa9.25□□□□□ -0.93
CDKL5-201ENST00000379989 A2ML1A8K2U0 1454 aa9.25□□□□□ -0.93
CDKL5-201ENST00000379989 FAM135BQ49AJ0 1406 aa9.25□□□□□ -0.93
CDKL5-201ENST00000379989 SETD1AO15047 1707 aaKnown RBP9.25□□□□□ -0.93
CDKL5-201ENST00000379989 IBTKQ9P2D0 1353 aaPredicted RBP9.25□□□□□ -0.93
CDKL5-201ENST00000379989 APPP05067 770 aa9.25□□□□□ -0.93
CDKL5-201ENST00000379989 DDIT3P35638 169 aa9.25□□□□□ -0.93
CDKL5-201ENST00000379989 TNPO1Q92973 898 aaKnown RBP9.25□□□□□ -0.93
CDKL5-201ENST00000379989 TECPR2O15040 1411 aa9.24□□□□□ -0.93
CDKL5-201ENST00000379989 ANKRD36BQ8N2N9 1353 aa9.24□□□□□ -0.93
CDKL5-201ENST00000379989 CFAP70Q5T0N1 1121 aa9.24□□□□□ -0.93
CDKL5-201ENST00000379989 PDCL2Q8N4E4 241 aa9.24□□□□□ -0.93
CDKL5-201ENST00000379989 UPF2Q9HAU5 1272 aaKnown RBP9.24□□□□□ -0.93
CDKL5-201ENST00000379989 MYO5BQ9ULV0 1848 aa9.24□□□□□ -0.93
CDKL5-201ENST00000379989 CCDC66A2RUB6 948 aa9.24□□□□□ -0.93
CDKL5-201ENST00000379989 SLFN14P0C7P3 912 aa9.24□□□□□ -0.93
CDKL5-201ENST00000379989 PRR29P0C7W0 189 aa9.24□□□□□ -0.93
CDKL5-201ENST00000379989 PRIMPOLQ96LW4 560 aa9.24□□□□□ -0.93
CDKL5-201ENST00000379989 HMGN5P82970 282 aaKnown RBP9.23□□□□□ -0.93
CDKL5-201ENST00000379989 BCL2L12Q9HB09 334 aa9.23□□□□□ -0.93
CDKL5-201ENST00000379989 ABCC11Q96J66 1382 aa9.23□□□□□ -0.93
CDKL5-201ENST00000379989 NCOA3Q9Y6Q9 1424 aa9.23□□□□□ -0.93
CDKL5-201ENST00000379989 FAM193AP78312 1265 aa9.23□□□□□ -0.93
CDKL5-201ENST00000379989 GABPB1Q06547 395 aaPredicted RBP9.23□□□□□ -0.93
CDKL5-201ENST00000379989 PTPRMP28827 1452 aa9.23□□□□□ -0.93
CDKL5-201ENST00000379989 RBM25P49756 843 aaKnown RBP9.22□□□□□ -0.93
CDKL5-201ENST00000379989 IDI1Q13907 227 aa9.22□□□□□ -0.93
CDKL5-201ENST00000379989 MLECQ14165 292 aa9.22□□□□□ -0.93
CDKL5-201ENST00000379989 YTHDC2Q9H6S0 1430 aaKnown RBP9.22□□□□□ -0.93
CDKL5-201ENST00000379989 CPS1P31327 1500 aa9.22□□□□□ -0.93
CDKL5-201ENST00000379989 HSP90AB1P08238 724 aaKnown RBP9.22□□□□□ -0.93
CDKL5-201ENST00000379989 ZNF622Q969S3 477 aaKnown RBP eCLIP9.22□□□□□ -0.93
CDKL5-201ENST00000379989 ATP7BP35670 1465 aa9.22□□□□□ -0.93
CDKL5-201ENST00000379989 AXDND1Q5T1B0 1012 aaPredicted RBP9.22□□□□□ -0.93
CDKL5-201ENST00000379989 KIF3AQ9Y496 699 aa9.22□□□□□ -0.93
CDKL5-201ENST00000379989 MAPK8IP3Q9UPT6 1336 aa9.21□□□□□ -0.93
CDKL5-201ENST00000379989 ADGRB2O60241 1585 aa9.21□□□□□ -0.93
CDKL5-201ENST00000379989 TULP1O00294 542 aaPredicted RBP9.21□□□□□ -0.93
CDKL5-201ENST00000379989 IGHDP01880 384 aa9.21□□□□□ -0.93
CDKL5-201ENST00000379989 GBP4Q96PP9 640 aa9.21□□□□□ -0.93
CDKL5-201ENST00000379989 ZBTB7CA1YPR0 619 aa9.21□□□□□ -0.94
CDKL5-201ENST00000379989 ESF1Q9H501 851 aaKnown RBP9.21□□□□□ -0.94
CDKL5-201ENST00000379989 TULP4Q9NRJ4 1543 aa9.21□□□□□ -0.94
CDKL5-201ENST00000379989 RIMS2Q9UQ26 1411 aa9.21□□□□□ -0.94
CDKL5-201ENST00000379989 UBR1Q8IWV7 1749 aa9.2□□□□□ -0.94
CDKL5-201ENST00000379989 LOC102724159A0A0B4J2E5 919 aa9.2□□□□□ -0.94
CDKL5-201ENST00000379989 PWP2Q15269 919 aaKnown RBP9.2□□□□□ -0.94
CDKL5-201ENST00000379989 RBSNQ9H1K0 784 aa9.2□□□□□ -0.94
CDKL5-201ENST00000379989 CCDC39Q9UFE4 941 aa9.2□□□□□ -0.94
CDKL5-201ENST00000379989 PTMSP20962 102 aa9.2□□□□□ -0.94
CDKL5-201ENST00000379989 PPP2R1AP30153 589 aa9.2□□□□□ -0.94
CDKL5-201ENST00000379989 FEZ1Q99689 392 aa9.2□□□□□ -0.94
CDKL5-201ENST00000379989 POLR3GLQ9BT43 218 aa9.2□□□□□ -0.94
CDKL5-201ENST00000379989 OGFRQ9NZT2 677 aa9.2□□□□□ -0.94
CDKL5-201ENST00000379989 FER1L4A9Z1Z3 1794 aa9.2□□□□□ -0.94
CDKL5-201ENST00000379989 SLIT1O75093 1534 aa9.2□□□□□ -0.94
CDKL5-201ENST00000379989 HSP90B1P14625 803 aaKnown RBP9.19□□□□□ -0.94
CDKL5-201ENST00000379989 ZNF445P59923 1031 aa9.19□□□□□ -0.94
CDKL5-201ENST00000379989 TNRQ92752 1358 aa9.19□□□□□ -0.94
CDKL5-201ENST00000379989 KIAA2012Q0VF49 1180 aa9.19□□□□□ -0.94
CDKL5-201ENST00000379989 RAB3GAP1Q15042 981 aa9.19□□□□□ -0.94
CDKL5-201ENST00000379989 ANKRD7Q92527 254 aa9.19□□□□□ -0.94
CDKL5-201ENST00000379989 CFAP65Q6ZU64 1925 aaKnown RBP9.19□□□□□ -0.94
CDKL5-201ENST00000379989 TMED8Q6PL24 325 aaPredicted RBP9.19□□□□□ -0.94
CDKL5-201ENST00000379989 TSPYL1Q9H0U9 437 aa9.19□□□□□ -0.94
CDKL5-201ENST00000379989 FEZ2Q9UHY8 353 aaPredicted RBP9.19□□□□□ -0.94
CDKL5-201ENST00000379989 ZMYM3Q14202 1370 aa9.19□□□□□ -0.94
CDKL5-201ENST00000379989 PATL2C9JE40 543 aaKnown RBP9.18□□□□□ -0.94
CDKL5-201ENST00000379989 WDR43Q15061 677 aaKnown RBP eCLIP9.18□□□□□ -0.94
CDKL5-201ENST00000379989 KLHL40Q2TBA0 621 aa9.18□□□□□ -0.94
CDKL5-201ENST00000379989 EP400NLQ6ZTU2 488 aa9.18□□□□□ -0.94
CDKL5-201ENST00000379989 EFCC1Q9HA90 598 aa9.18□□□□□ -0.94
CDKL5-201ENST00000379989 TERF2IPQ9NYB0 399 aa9.18□□□□□ -0.94
CDKL5-201ENST00000379989 CALCOCO1Q9P1Z2 691 aa9.18□□□□□ -0.94
CDKL5-201ENST00000379989 CDC42BPGQ6DT37 1551 aa9.17□□□□□ -0.94
CDKL5-201ENST00000379989 NRXN3Q9Y4C0 1643 aa9.17□□□□□ -0.94
CDKL5-201ENST00000379989 RIMS1Q86UR5 1692 aaKnown RBP9.17□□□□□ -0.94
CDKL5-201ENST00000379989 CHGAP10645 457 aaKnown RBP9.17□□□□□ -0.94
CDKL5-201ENST00000379989 CFAP53Q96M91 514 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms