RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 FAM174AQ8TBP5 190 aa5.36□□□□□ -1.55
VPS13A-206ENST00000376646 CAPN5O15484 640 aaPredicted RBP5.35□□□□□ -1.55
VPS13A-206ENST00000376646 USP17L8P0C7I0 530 aa5.35□□□□□ -1.55
VPS13A-206ENST00000376646 SH3BP5LQ7L8J4 393 aa5.35□□□□□ -1.55
VPS13A-206ENST00000376646 SH3RF1Q7Z6J0 888 aa5.35□□□□□ -1.55
VPS13A-206ENST00000376646 BPHLQ86WA6 291 aaPredicted RBP5.35□□□□□ -1.55
VPS13A-206ENST00000376646 TRIM46Q7Z4K8 759 aa5.35□□□□□ -1.55
VPS13A-206ENST00000376646 ADH1CP00326 375 aa5.34□□□□□ -1.55
VPS13A-206ENST00000376646 GRM5P41594 1212 aa5.34□□□□□ -1.55
VPS13A-206ENST00000376646 PCMTD1Q96MG8 357 aaPredicted RBP5.34□□□□□ -1.55
VPS13A-206ENST00000376646 ZFAND3Q9H8U3 227 aa5.34□□□□□ -1.55
VPS13A-206ENST00000376646 TERTO14746 1132 aaKnown RBP5.34□□□□□ -1.56
VPS13A-206ENST00000376646 WDR4P57081 412 aaKnown RBP5.34□□□□□ -1.56
VPS13A-206ENST00000376646 NBPF14Q5TI25 921 aa5.34□□□□□ -1.56
VPS13A-206ENST00000376646 OCSTAMPQ9BR26 566 aa5.34□□□□□ -1.56
VPS13A-206ENST00000376646 FKBPLQ9UIM3 349 aa5.34□□□□□ -1.56
VPS13A-206ENST00000376646 TIMP2P16035 220 aa5.33□□□□□ -1.56
VPS13A-206ENST00000376646 ARMC2Q8NEN0 867 aa5.33□□□□□ -1.56
VPS13A-206ENST00000376646 ITPKCQ96DU7 683 aa5.33□□□□□ -1.56
VPS13A-206ENST00000376646 CDK15Q96Q40 435 aa5.33□□□□□ -1.56
VPS13A-206ENST00000376646 FSHRP23945 695 aa5.32□□□□□ -1.56
VPS13A-206ENST00000376646 ERFEQ4G0M1 354 aa5.32□□□□□ -1.56
VPS13A-206ENST00000376646 C1QTNF2Q9BXJ5 285 aa5.32□□□□□ -1.56
VPS13A-206ENST00000376646 KLF16Q9BXK1 252 aaPredicted RBP5.32□□□□□ -1.56
VPS13A-206ENST00000376646 DNMT3AQ9Y6K1 912 aaPredicted RBP5.32□□□□□ -1.56
VPS13A-206ENST00000376646 MPNDQ8N594 471 aa5.32□□□□□ -1.56
VPS13A-206ENST00000376646 TRIM47Q96LD4 638 aa5.32□□□□□ -1.56
VPS13A-206ENST00000376646 ZIC2O95409 532 aaPredicted RBP5.31□□□□□ -1.56
VPS13A-206ENST00000376646 RASSF7Q02833 373 aa5.31□□□□□ -1.56
VPS13A-206ENST00000376646 VASH1Q7L8A9 365 aaPredicted RBP5.31□□□□□ -1.56
VPS13A-206ENST00000376646 ARHGAP9Q9BRR9 750 aa5.31□□□□□ -1.56
VPS13A-206ENST00000376646 TRIM34Q9BYJ4 488 aa5.31□□□□□ -1.56
VPS13A-206ENST00000376646 GOPCQ9HD26 462 aa5.31□□□□□ -1.56
VPS13A-206ENST00000376646 ZFP42Q96MM3 310 aa5.31□□□□□ -1.56
VPS13A-206ENST00000376646 SOBPA7XYQ1 873 aa5.3□□□□□ -1.56
VPS13A-206ENST00000376646 PURBQ96QR8 312 aaKnown RBP5.3□□□□□ -1.56
VPS13A-206ENST00000376646 PDXDC2PQ6P474 469 aa5.3□□□□□ -1.56
VPS13A-206ENST00000376646 KRTAP19-1Q8IUB9 90 aa5.3□□□□□ -1.56
VPS13A-206ENST00000376646 KRTAP4-11Q9BYQ6 195 aa5.3□□□□□ -1.56
VPS13A-206ENST00000376646 NR5A1Q13285 461 aa5.29□□□□□ -1.56
VPS13A-206ENST00000376646 ZBTB33Q86T24 672 aa5.29□□□□□ -1.56
VPS13A-206ENST00000376646 TRMT44Q8IYL2 757 aaKnown RBP5.29□□□□□ -1.56
VPS13A-206ENST00000376646 ADAM32Q8TC27 787 aa5.29□□□□□ -1.56
VPS13A-206ENST00000376646 RAB15P59190 212 aa5.28□□□□□ -1.56
VPS13A-206ENST00000376646 C6orf118Q5T5N4 469 aa5.28□□□□□ -1.56
VPS13A-206ENST00000376646 MRPL14Q6P1L8 145 aaKnown RBP5.28□□□□□ -1.56
VPS13A-206ENST00000376646 GPKOWQ92917 476 aaPredicted RBP eCLIP5.28□□□□□ -1.56
VPS13A-206ENST00000376646 SENP2Q9HC62 589 aa5.28□□□□□ -1.56
VPS13A-206ENST00000376646 VEGFBP49765 207 aa5.28□□□□□ -1.56
VPS13A-206ENST00000376646 LCE2CQ5TA81 110 aa5.28□□□□□ -1.56
VPS13A-206ENST00000376646 SLC10A4Q96EP9 437 aa5.28□□□□□ -1.56
VPS13A-206ENST00000376646 GJD4Q96KN9 370 aaPredicted RBP5.28□□□□□ -1.56
VPS13A-206ENST00000376646 SNRKQ9NRH2 765 aa5.27□□□□□ -1.57
VPS13A-206ENST00000376646 MAP4K5Q9Y4K4 846 aa5.27□□□□□ -1.57
VPS13A-206ENST00000376646 PTK2Q05397 1052 aa5.27□□□□□ -1.57
VPS13A-206ENST00000376646 CBLBQ13191 982 aa5.27□□□□□ -1.57
VPS13A-206ENST00000376646 TMEM259Q4ZIN3 620 aa5.27□□□□□ -1.57
VPS13A-206ENST00000376646 CCDC116Q8IYX3 515 aa5.27□□□□□ -1.57
VPS13A-206ENST00000376646 KCTD15Q96SI1 283 aaPredicted RBP5.27□□□□□ -1.57
VPS13A-206ENST00000376646 PPP1R26Q5T8A7 1209 aaPredicted RBP5.26□□□□□ -1.57
VPS13A-206ENST00000376646 YBX3P16989 372 aaKnown RBP eCLIP5.26□□□□□ -1.57
VPS13A-206ENST00000376646 MTMR14Q8NCE2 650 aa5.26□□□□□ -1.57
VPS13A-206ENST00000376646 KIFC2Q96AC6 838 aa5.26□□□□□ -1.57
VPS13A-206ENST00000376646 ZC3H4Q9UPT8 1303 aaKnown RBP5.25□□□□□ -1.57
VPS13A-206ENST00000376646 GPR37L1O60883 481 aa5.25□□□□□ -1.57
VPS13A-206ENST00000376646 INTS6LQ5JSJ4 861 aaKnown RBP5.25□□□□□ -1.57
VPS13A-206ENST00000376646 MEIOBQ8N635 442 aa5.25□□□□□ -1.57
VPS13A-206ENST00000376646 TMPRSS4Q9NRS4 437 aa5.25□□□□□ -1.57
VPS13A-206ENST00000376646 FBXO45P0C2W1 286 aa5.24□□□□□ -1.57
VPS13A-206ENST00000376646 BMP2P12643 396 aa5.24□□□□□ -1.57
VPS13A-206ENST00000376646 SCARF1Q14162 830 aa5.24□□□□□ -1.57
VPS13A-206ENST00000376646 LINC00528Q8N1L1 170 aa5.24□□□□□ -1.57
VPS13A-206ENST00000376646 AGBL1Q96MI9 1066 aa5.24□□□□□ -1.57
VPS13A-206ENST00000376646 DZIP3Q86Y13 1208 aaKnown RBP5.23□□□□□ -1.57
VPS13A-206ENST00000376646 EMILIN1Q9Y6C2 1016 aa5.23□□□□□ -1.57
VPS13A-206ENST00000376646 GPAT2Q6NUI2 795 aa5.23□□□□□ -1.57
VPS13A-206ENST00000376646 GPSM3Q9Y4H4 160 aa5.23□□□□□ -1.57
VPS13A-206ENST00000376646 PCDHB9Q9Y5E1 797 aa5.22□□□□□ -1.57
VPS13A-206ENST00000376646 ZNF784Q8NCA9 323 aaPredicted RBP5.22□□□□□ -1.57
VPS13A-206ENST00000376646 PNMA1Q8ND90 353 aa5.22□□□□□ -1.57
VPS13A-206ENST00000376646 DNMT3LQ9UJW3 386 aa5.22□□□□□ -1.57
VPS13A-206ENST00000376646 ZBBXA8MT70 800 aa5.21□□□□□ -1.58
VPS13A-206ENST00000376646 ERVH48-1M5A8F1 160 aa5.21□□□□□ -1.58
VPS13A-206ENST00000376646 MAN1A2O60476 641 aa5.21□□□□□ -1.58
VPS13A-206ENST00000376646 GSK3AP49840 483 aa5.21□□□□□ -1.58
VPS13A-206ENST00000376646 RELBQ01201 579 aa5.21□□□□□ -1.58
VPS13A-206ENST00000376646 NXF1Q9UBU9 619 aaKnown RBP5.21□□□□□ -1.58
VPS13A-206ENST00000376646 FIGNL2A6NMB9 653 aa5.21□□□□□ -1.58
VPS13A-206ENST00000376646 GIGYF1O75420 1035 aaPredicted RBP5.21□□□□□ -1.58
VPS13A-206ENST00000376646 UPP2O95045 317 aa5.21□□□□□ -1.58
VPS13A-206ENST00000376646 ADD1P35611 737 aaKnown RBP5.21□□□□□ -1.58
VPS13A-206ENST00000376646 NBPF20Q3BBV1 942 aa5.21□□□□□ -1.58
VPS13A-206ENST00000376646 PGPEP1Q9NXJ5 209 aa5.21□□□□□ -1.58
VPS13A-206ENST00000376646 TBC1D2BQ9UPU7 963 aa5.21□□□□□ -1.58
VPS13A-206ENST00000376646 Q6ZVU0 165 aa5.2□□□□□ -1.58
VPS13A-206ENST00000376646 BANK1Q8NDB2 785 aa5.2□□□□□ -1.58
VPS13A-206ENST00000376646 ZNF395Q9H8N7 513 aaPredicted RBP5.2□□□□□ -1.58
VPS13A-206ENST00000376646 CDV3Q9UKY7 258 aaKnown RBP5.2□□□□□ -1.58
VPS13A-206ENST00000376646 ERBB4Q15303 1308 aa5.2□□□□□ -1.58
VPS13A-206ENST00000376646 TSEN34Q9BSV6 310 aaKnown RBP5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms