RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 CCDC57Q2TAC2 916 aa13.66□□□□□ -0.22
VPS13A-205ENST00000376636 LNPKQ9C0E8 428 aa13.66□□□□□ -0.22
VPS13A-205ENST00000376636 CGNQ9P2M7 1197 aaKnown RBP13.65□□□□□ -0.22
VPS13A-205ENST00000376636 BMS1Q14692 1282 aaKnown RBP13.65□□□□□ -0.22
VPS13A-205ENST00000376636 GNL3LQ9NVN8 582 aaKnown RBP13.65□□□□□ -0.22
VPS13A-205ENST00000376636 GSTTP1A0A1W2PQM5 241 aa13.65□□□□□ -0.22
VPS13A-205ENST00000376636 POTEB2H3BUK9 544 aa13.65□□□□□ -0.22
VPS13A-205ENST00000376636 PANK3Q9H999 370 aa13.65□□□□□ -0.22
VPS13A-205ENST00000376636 GRPEL1Q9HAV7 217 aa13.65□□□□□ -0.22
VPS13A-205ENST00000376636 KIF18AQ8NI77 898 aa13.65□□□□□ -0.23
VPS13A-205ENST00000376636 CASQ1P31415 396 aa13.64□□□□□ -0.23
VPS13A-205ENST00000376636 SYTL4Q96C24 671 aaPredicted RBP13.64□□□□□ -0.23
VPS13A-205ENST00000376636 PRDM2Q13029 1718 aa13.64□□□□□ -0.23
VPS13A-205ENST00000376636 NEK4P51957 841 aa13.64□□□□□ -0.23
VPS13A-205ENST00000376636 SREK1Q8WXA9 508 aaKnown RBP13.64□□□□□ -0.23
VPS13A-205ENST00000376636 EIF5P55010 431 aaKnown RBP13.64□□□□□ -0.23
VPS13A-205ENST00000376636 RIPK4P57078 832 aa13.64□□□□□ -0.23
VPS13A-205ENST00000376636 RIC3Q7Z5B4 369 aa13.64□□□□□ -0.23
VPS13A-205ENST00000376636 GPATCH11Q8N954 259 aa13.64□□□□□ -0.23
VPS13A-205ENST00000376636 UPF3BQ9BZI7 483 aaKnown RBP13.64□□□□□ -0.23
VPS13A-205ENST00000376636 WASHC2CQ9Y4E1 1318 aa13.64□□□□□ -0.23
VPS13A-205ENST00000376636 DIAPH1O60610 1272 aaKnown RBP13.64□□□□□ -0.23
VPS13A-205ENST00000376636 MATR3P43243 847 aaKnown RBP eCLIP13.64□□□□□ -0.233e-6■■■■□ 20.9
VPS13A-205ENST00000376636 CYP46A1Q9Y6A2 500 aa13.64□□□□□ -0.23
VPS13A-205ENST00000376636 USP47Q96K76 1375 aa13.64□□□□□ -0.23
VPS13A-205ENST00000376636 SSR1P43307 286 aaKnown RBP13.63□□□□□ -0.23
VPS13A-205ENST00000376636 DDX12PQ92771 950 aa13.63□□□□□ -0.23
VPS13A-205ENST00000376636 NACAP1Q9BZK3 213 aa13.63□□□□□ -0.23
VPS13A-205ENST00000376636 CEBPZQ03701 1054 aaKnown RBP13.63□□□□□ -0.23
VPS13A-205ENST00000376636 RUNDC1Q96C34 613 aa13.63□□□□□ -0.23
VPS13A-205ENST00000376636 ZHX3Q9H4I2 956 aa13.63□□□□□ -0.23
VPS13A-205ENST00000376636 MAPK8IP2Q13387 824 aaPredicted RBP13.63□□□□□ -0.23
VPS13A-205ENST00000376636 FILIP1Q7Z7B0 1213 aa13.63□□□□□ -0.23
VPS13A-205ENST00000376636 CCDC69A6NI79 296 aa13.63□□□□□ -0.23
VPS13A-205ENST00000376636 UBE4AQ14139 1066 aa13.63□□□□□ -0.23
VPS13A-205ENST00000376636 BBXQ8WY36 941 aaPredicted RBP13.62□□□□□ -0.23
VPS13A-205ENST00000376636 CEP131Q9UPN4 1083 aa13.62□□□□□ -0.23
VPS13A-205ENST00000376636 RRBP1Q9P2E9 1410 aaKnown RBP13.62□□□□□ -0.23
VPS13A-205ENST00000376636 CCDC83Q8IWF9 413 aa13.62□□□□□ -0.23
VPS13A-205ENST00000376636 ATP2B1P20020 1258 aa13.62□□□□□ -0.23
VPS13A-205ENST00000376636 NAA15Q9BXJ9 866 aaKnown RBP13.62□□□□□ -0.23
VPS13A-205ENST00000376636 FAM114A1Q8IWE2 563 aa13.62□□□□□ -0.23
VPS13A-205ENST00000376636 GOPCQ9HD26 462 aa13.62□□□□□ -0.23
VPS13A-205ENST00000376636 SFPQP23246 707 aaKnown RBP eCLIP13.62□□□□□ -0.23
VPS13A-205ENST00000376636 CARMIL1Q5VZK9 1371 aa13.62□□□□□ -0.23
VPS13A-205ENST00000376636 EFCAB2Q5VUJ9 269 aa13.62□□□□□ -0.23
VPS13A-205ENST00000376636 CCDC150Q8NCX0 1101 aa13.61□□□□□ -0.23
VPS13A-205ENST00000376636 MTMR7Q9Y216 660 aa13.61□□□□□ -0.23
VPS13A-205ENST00000376636 DDX46Q7L014 1031 aaKnown RBP13.61□□□□□ -0.23
VPS13A-205ENST00000376636 CUX2O14529 1486 aa13.61□□□□□ -0.23
VPS13A-205ENST00000376636 PTPN14Q15678 1187 aa13.61□□□□□ -0.23
VPS13A-205ENST00000376636 TSPYL4Q9UJ04 414 aa13.61□□□□□ -0.23
VPS13A-205ENST00000376636 WASF1Q92558 559 aa13.61□□□□□ -0.23
VPS13A-205ENST00000376636 NECTIN2Q92692 538 aa13.61□□□□□ -0.23
VPS13A-205ENST00000376636 GNAI3P08754 354 aa13.61□□□□□ -0.23
VPS13A-205ENST00000376636 SPATA32Q96LK8 384 aa13.61□□□□□ -0.23
VPS13A-205ENST00000376636 RNF187Q5TA31 235 aaPredicted RBP13.6□□□□□ -0.23
VPS13A-205ENST00000376636 SOGA3Q5TF21 947 aa13.6□□□□□ -0.23
VPS13A-205ENST00000376636 FERMT1Q9BQL6 677 aa13.6□□□□□ -0.23
VPS13A-205ENST00000376636 TIGD1Q96MW7 591 aa13.6□□□□□ -0.23
VPS13A-205ENST00000376636 KIF6Q6ZMV9 814 aa13.6□□□□□ -0.23
VPS13A-205ENST00000376636 NUP62CLQ9H1M0 184 aa13.6□□□□□ -0.23
VPS13A-205ENST00000376636 IPO4Q8TEX9 1081 aaKnown RBP13.6□□□□□ -0.23
VPS13A-205ENST00000376636 FGFR1OPO95684 399 aaKnown RBP13.59□□□□□ -0.23
VPS13A-205ENST00000376636 ESPNB1AK53 854 aa13.59□□□□□ -0.23
VPS13A-205ENST00000376636 WDR66Q8TBY9 1149 aa13.59□□□□□ -0.23
VPS13A-205ENST00000376636 SMG6Q86US8 1419 aaKnown RBP13.59□□□□□ -0.23
VPS13A-205ENST00000376636 PABPN1LA6NDY0 278 aaKnown RBP13.59□□□□□ -0.23
VPS13A-205ENST00000376636 HOMER2Q9NSB8 354 aa13.59□□□□□ -0.23
VPS13A-205ENST00000376636 CFAP100Q494V2 611 aa13.59□□□□□ -0.23
VPS13A-205ENST00000376636 FSD2A1L4K1 749 aa13.59□□□□□ -0.23
VPS13A-205ENST00000376636 FKBP15Q5T1M5 1219 aa13.59□□□□□ -0.23
VPS13A-205ENST00000376636 TSNARE1Q96NA8 513 aa13.59□□□□□ -0.23
VPS13A-205ENST00000376636 BRPF3Q9ULD4 1205 aa13.59□□□□□ -0.23
VPS13A-205ENST00000376636 CCDC158Q5M9N0 1113 aa13.58□□□□□ -0.23
VPS13A-205ENST00000376636 CTR9Q6PD62 1173 aa13.58□□□□□ -0.23
VPS13A-205ENST00000376636 ANKS4BQ8N8V4 417 aa13.58□□□□□ -0.24
VPS13A-205ENST00000376636 L3MBTL2Q969R5 705 aa13.58□□□□□ -0.24
VPS13A-205ENST00000376636 ZSCAN30Q86W11 494 aa13.58□□□□□ -0.24
VPS13A-205ENST00000376636 ALS2CR12Q96Q35 445 aa13.58□□□□□ -0.24
VPS13A-205ENST00000376636 CCDC178Q5BJE1 867 aa13.58□□□□□ -0.24
VPS13A-205ENST00000376636 ZSCAN25Q6NSZ9 544 aa13.58□□□□□ -0.24
VPS13A-205ENST00000376636 NAP1L3Q99457 506 aaPredicted RBP13.58□□□□□ -0.24
VPS13A-205ENST00000376636 NACADO15069 1562 aa13.58□□□□□ -0.24
VPS13A-205ENST00000376636 HSPA4P34932 840 aa13.58□□□□□ -0.24
VPS13A-205ENST00000376636 MNAT1P51948 309 aa13.58□□□□□ -0.24
VPS13A-205ENST00000376636 COMMD10Q9Y6G5 202 aa13.57□□□□□ -0.24
VPS13A-205ENST00000376636 PRKRIP1Q9H875 184 aaPredicted RBP13.57□□□□□ -0.24
VPS13A-205ENST00000376636 VGFO15240 615 aaPredicted RBP13.57□□□□□ -0.24
VPS13A-205ENST00000376636 SPECC1Q5M775 1068 aa13.57□□□□□ -0.24
VPS13A-205ENST00000376636 DNAJC2Q99543 621 aaKnown RBP13.57□□□□□ -0.24
VPS13A-205ENST00000376636 LARP1BQ659C4 914 aaKnown RBP13.57□□□□□ -0.24
VPS13A-205ENST00000376636 LARP1Q6PKG0 1096 aaKnown RBP13.57□□□□□ -0.24
VPS13A-205ENST00000376636 MAP3K11Q16584 847 aa13.57□□□□□ -0.24
VPS13A-205ENST00000376636 GCC1Q96CN9 775 aa13.57□□□□□ -0.24
VPS13A-205ENST00000376636 IKBKGQ9Y6K9 419 aa13.57□□□□□ -0.24
VPS13A-205ENST00000376636 USO1O60763 962 aaKnown RBP13.56□□□□□ -0.24
VPS13A-205ENST00000376636 TRAK1Q9UPV9 953 aa13.56□□□□□ -0.24
VPS13A-205ENST00000376636 TTC39AQ5SRH9 613 aa13.56□□□□□ -0.24
VPS13A-205ENST00000376636 CCDC30Q5VVM6 783 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms