RNA–Protein interactions for RNA: ENST00000374481.7

CD28-202, Transcript of CD28 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD28, Length 4,526 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-202ENST00000374481 PDILTQ8N807 584 aa12.14□□□□□ -0.47
CD28-202ENST00000374481 KRT85P78386 507 aa12.14□□□□□ -0.47
CD28-202ENST00000374481 API5Q9BZZ5 524 aaKnown RBP12.14□□□□□ -0.47
CD28-202ENST00000374481 C1orf115Q9H7X2 142 aa12.14□□□□□ -0.47
CD28-202ENST00000374481 PCDHB15Q9Y5E8 787 aa12.14□□□□□ -0.47
CD28-202ENST00000374481 FGD5Q6ZNL6 1462 aa12.14□□□□□ -0.47
CD28-202ENST00000374481 SSR1P43307 286 aaKnown RBP12.14□□□□□ -0.47
CD28-202ENST00000374481 ATF7IPQ6VMQ6 1270 aa12.14□□□□□ -0.47
CD28-202ENST00000374481 CCDC171Q6TFL3 1326 aa12.13□□□□□ -0.47
CD28-202ENST00000374481 KINO60870 393 aaKnown RBP12.13□□□□□ -0.47
CD28-202ENST00000374481 CAPN2P17655 700 aa12.13□□□□□ -0.47
CD28-202ENST00000374481 CCDC34Q96HJ3 373 aa12.13□□□□□ -0.47
CD28-202ENST00000374481 RBM42Q9BTD8 480 aaKnown RBP12.13□□□□□ -0.47
CD28-202ENST00000374481 EFCC1Q9HA90 598 aa12.13□□□□□ -0.47
CD28-202ENST00000374481 RARSP54136 660 aaKnown RBP12.13□□□□□ -0.47
CD28-202ENST00000374481 IRX5P78411 483 aaPredicted RBP12.13□□□□□ -0.47
CD28-202ENST00000374481 EXOSC9Q06265 439 aaKnown RBP12.13□□□□□ -0.47
CD28-202ENST00000374481 CAMK4Q16566 473 aa12.13□□□□□ -0.47
CD28-202ENST00000374481 MICALL1Q8N3F8 863 aa12.12□□□□□ -0.47
CD28-202ENST00000374481 ZBTB9Q96C00 473 aa12.12□□□□□ -0.47
CD28-202ENST00000374481 ATP2B3Q16720 1220 aa12.12□□□□□ -0.47
CD28-202ENST00000374481 TEX2Q8IWB9 1127 aa12.12□□□□□ -0.47
CD28-202ENST00000374481 PLCD4Q9BRC7 762 aa12.12□□□□□ -0.47
CD28-202ENST00000374481 SENP3Q9H4L4 574 aaPredicted RBP12.12□□□□□ -0.47
CD28-202ENST00000374481 NOB1Q9ULX3 412 aaKnown RBP12.12□□□□□ -0.47
CD28-202ENST00000374481 SFPQP23246 707 aaKnown RBP eCLIP12.12□□□□□ -0.47
CD28-202ENST00000374481 SNW1Q13573 536 aaKnown RBP12.12□□□□□ -0.47
CD28-202ENST00000374481 SHTN1A0MZ66 631 aa12.11□□□□□ -0.47
CD28-202ENST00000374481 PDCP20941 246 aa12.11□□□□□ -0.47
CD28-202ENST00000374481 BMP2KLQ5H9B9 411 aa12.11□□□□□ -0.47
CD28-202ENST00000374481 TBC1D9Q6ZT07 1266 aa12.11□□□□□ -0.47
CD28-202ENST00000374481 PTGS1P23219 599 aa12.11□□□□□ -0.47
CD28-202ENST00000374481 NF2P35240 595 aa12.11□□□□□ -0.47
CD28-202ENST00000374481 TSR1Q2NL82 804 aaKnown RBP12.11□□□□□ -0.47
CD28-202ENST00000374481 GIMAP6Q6P9H5 292 aa12.11□□□□□ -0.47
CD28-202ENST00000374481 ARFGAP3Q9NP61 516 aa12.11□□□□□ -0.47
CD28-202ENST00000374481 MYOM3Q5VTT5 1437 aa12.1□□□□□ -0.47
CD28-202ENST00000374481 PLPPR3Q6T4P5 718 aa12.1□□□□□ -0.47
CD28-202ENST00000374481 KDM4AO75164 1064 aa12.1□□□□□ -0.47
CD28-202ENST00000374481 JAKMIP3Q5VZ66 844 aa12.1□□□□□ -0.47
CD28-202ENST00000374481 PLEKHH1Q9ULM0 1364 aa12.1□□□□□ -0.47
CD28-202ENST00000374481 SARNPP82979 210 aaKnown RBP12.1□□□□□ -0.47
CD28-202ENST00000374481 ERO1AQ96HE7 468 aa12.1□□□□□ -0.47
CD28-202ENST00000374481 LRRCC1Q9C099 1032 aa12.1□□□□□ -0.47
CD28-202ENST00000374481 GBP3Q9H0R5 595 aa12.1□□□□□ -0.47
CD28-202ENST00000374481 ARHGAP29Q52LW3 1261 aa12.09□□□□□ -0.47
CD28-202ENST00000374481 MAP2K2P36507 400 aa12.09□□□□□ -0.47
CD28-202ENST00000374481 RUFY2Q8WXA3 655 aa12.09□□□□□ -0.47
CD28-202ENST00000374481 DCTN1Q14203 1278 aa12.09□□□□□ -0.47
CD28-202ENST00000374481 ZSCAN26Q16670 478 aa12.09□□□□□ -0.47
CD28-202ENST00000374481 TSR2Q969E8 191 aaKnown RBP12.09□□□□□ -0.47
CD28-202ENST00000374481 IPO7O95373 1038 aaKnown RBP12.09□□□□□ -0.47
CD28-202ENST00000374481 CKAP2LQ8IYA6 745 aa12.09□□□□□ -0.47
CD28-202ENST00000374481 GPATCH3Q96I76 525 aa12.09□□□□□ -0.47
CD28-202ENST00000374481 DHX29Q7Z478 1369 aaKnown RBP12.08□□□□□ -0.47
CD28-202ENST00000374481 SKILP12757 684 aa12.08□□□□□ -0.48
CD28-202ENST00000374481 MX1P20591 662 aa12.08□□□□□ -0.48
CD28-202ENST00000374481 WDR63Q8IWG1 891 aa12.08□□□□□ -0.48
CD28-202ENST00000374481 CEP57L1Q8IYX8 460 aa12.08□□□□□ -0.48
CD28-202ENST00000374481 SECISBP2LQ93073 1101 aaKnown RBP12.08□□□□□ -0.48
CD28-202ENST00000374481 UBE2HP62256 183 aa12.08□□□□□ -0.48
CD28-202ENST00000374481 GBP6Q6ZN66 633 aa12.08□□□□□ -0.48
CD28-202ENST00000374481 TICAM2Q86XR7 235 aa12.08□□□□□ -0.48
CD28-202ENST00000374481 TMEM51Q9NW97 253 aa12.08□□□□□ -0.48
CD28-202ENST00000374481 LMBRD1Q9NUN5 540 aa12.07□□□□□ -0.48
CD28-202ENST00000374481 CCDC144AA2RUR9 1427 aa12.07□□□□□ -0.48
CD28-202ENST00000374481 CASQ1P31415 396 aa12.07□□□□□ -0.48
CD28-202ENST00000374481 ATP6V1AP38606 617 aa12.07□□□□□ -0.48
CD28-202ENST00000374481 ZNF165P49910 485 aa12.07□□□□□ -0.48
CD28-202ENST00000374481 ELF2Q15723 593 aa12.07□□□□□ -0.48
CD28-202ENST00000374481 TMEM57Q8N5G2 664 aa12.07□□□□□ -0.48
CD28-202ENST00000374481 PPM1EQ8WY54 764 aa12.07□□□□□ -0.48
CD28-202ENST00000374481 SMARCC1Q92922 1105 aaPredicted RBP12.07□□□□□ -0.48
CD28-202ENST00000374481 UPF3BQ9BZI7 483 aaKnown RBP12.07□□□□□ -0.48
CD28-202ENST00000374481 NCOA2Q15596 1464 aa12.07□□□□□ -0.48
CD28-202ENST00000374481 NAIPQ13075 1403 aa12.07□□□□□ -0.48
CD28-202ENST00000374481 FAM200AQ8TCP9 573 aa12.07□□□□□ -0.48
CD28-202ENST00000374481 SPATA32Q96LK8 384 aa12.07□□□□□ -0.48
CD28-202ENST00000374481 STK31Q9BXU1 1019 aa12.07□□□□□ -0.48
CD28-202ENST00000374481 PES1O00541 588 aaKnown RBP12.07□□□□□ -0.48
CD28-202ENST00000374481 TERF2Q15554 542 aa12.07□□□□□ -0.48
CD28-202ENST00000374481 NEK11Q8NG66 645 aa12.07□□□□□ -0.48
CD28-202ENST00000374481 RBM28Q9NW13 759 aaKnown RBP12.07□□□□□ -0.48
CD28-202ENST00000374481 CASKIN1Q8WXD9 1431 aa12.06□□□□□ -0.48
CD28-202ENST00000374481 SERPINC1P01008 464 aa12.06□□□□□ -0.48
CD28-202ENST00000374481 CRACR2AQ9BSW2 395 aa12.06□□□□□ -0.48
CD28-202ENST00000374481 FYCO1Q9BQS8 1478 aa12.06□□□□□ -0.48
CD28-202ENST00000374481 ROCK1Q13464 1354 aa12.06□□□□□ -0.48
CD28-202ENST00000374481 GOLIM4O00461 696 aa12.06□□□□□ -0.48
CD28-202ENST00000374481 MCM6Q14566 821 aa12.06□□□□□ -0.48
CD28-202ENST00000374481 LARP1BQ659C4 914 aaKnown RBP12.06□□□□□ -0.48
CD28-202ENST00000374481 CAGE1Q8TC20 777 aa12.06□□□□□ -0.48
CD28-202ENST00000374481 USP48Q86UV5 1035 aa12.06□□□□□ -0.48
CD28-202ENST00000374481 TMEM63CQ9P1W3 806 aa12.06□□□□□ -0.48
CD28-202ENST00000374481 GSDMDP57764 484 aa12.05□□□□□ -0.48
CD28-202ENST00000374481 CASTP20810 708 aaKnown RBP12.05□□□□□ -0.48
CD28-202ENST00000374481 CEBPZQ03701 1054 aaKnown RBP12.05□□□□□ -0.48
CD28-202ENST00000374481 STAG3Q9UJ98 1225 aa12.05□□□□□ -0.48
CD28-202ENST00000374481 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.05□□□□□ -0.48
CD28-202ENST00000374481 ZSCAN12O43309 604 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms