RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 FAM83GA6ND36 823 aa18.98■□□□□ 0.63
HMGA1-203ENST00000374116 SLIT3O75094 1523 aa18.98■□□□□ 0.63
HMGA1-203ENST00000374116 MORC1Q86VD1 984 aa18.97■□□□□ 0.63
HMGA1-203ENST00000374116 PRDM11Q9NQV5 511 aa18.97■□□□□ 0.63
HMGA1-203ENST00000374116 NPC1L1Q9UHC9 1359 aa18.96■□□□□ 0.63
HMGA1-203ENST00000374116 USP54Q70EL1 1684 aa18.96■□□□□ 0.63
HMGA1-203ENST00000374116 NFAT5O94916 1531 aa18.95■□□□□ 0.62
HMGA1-203ENST00000374116 NGLY1Q96IV0 654 aa18.95■□□□□ 0.62
HMGA1-203ENST00000374116 SMG6Q86US8 1419 aaKnown RBP18.95■□□□□ 0.62
HMGA1-203ENST00000374116 KCNH5Q8NCM2 988 aa18.95■□□□□ 0.62
HMGA1-203ENST00000374116 ANKRD26Q9UPS8 1709 aa18.95■□□□□ 0.62
HMGA1-203ENST00000374116 PPM1GO15355 546 aaPredicted RBP18.94■□□□□ 0.62
HMGA1-203ENST00000374116 EMILIN1Q9Y6C2 1016 aa18.93■□□□□ 0.62
HMGA1-203ENST00000374116 LTN1O94822 1766 aa18.93■□□□□ 0.62
HMGA1-203ENST00000374116 ARHGEF25Q86VW2 580 aa18.93■□□□□ 0.62
HMGA1-203ENST00000374116 AXIN2Q9Y2T1 843 aa18.93■□□□□ 0.62
HMGA1-203ENST00000374116 INSRP06213 1382 aa18.92■□□□□ 0.62
HMGA1-203ENST00000374116 MAP3K19Q56UN5 1328 aa18.92■□□□□ 0.62
HMGA1-203ENST00000374116 MAP2P11137 1827 aaKnown RBP18.91■□□□□ 0.62
HMGA1-203ENST00000374116 BTG4Q9NY30 223 aa18.91■□□□□ 0.62
HMGA1-203ENST00000374116 NSD2O96028 1365 aa18.91■□□□□ 0.62
HMGA1-203ENST00000374116 RGPD5Q99666 1765 aa18.91■□□□□ 0.62
HMGA1-203ENST00000374116 AFF2P51816 1311 aa18.9■□□□□ 0.62
HMGA1-203ENST00000374116 PHF23Q9BUL5 403 aaPredicted RBP18.9■□□□□ 0.62
HMGA1-203ENST00000374116 STRN4Q9NRL3 753 aa18.89■□□□□ 0.61
HMGA1-203ENST00000374116 NUDCQ9Y266 331 aa18.89■□□□□ 0.61
HMGA1-203ENST00000374116 PLCH1Q4KWH8 1693 aa18.89■□□□□ 0.61
HMGA1-203ENST00000374116 CPDO75976 1380 aa18.88■□□□□ 0.61
HMGA1-203ENST00000374116 AMPHP49418 695 aa18.88■□□□□ 0.61
HMGA1-203ENST00000374116 POLKQ9UBT6 870 aa18.88■□□□□ 0.61
HMGA1-203ENST00000374116 LTV1Q96GA3 475 aaPredicted RBP18.88■□□□□ 0.61
HMGA1-203ENST00000374116 PEAK1Q9H792 1746 aa18.87■□□□□ 0.61
HMGA1-203ENST00000374116 CAMTA1Q9Y6Y1 1673 aa18.87■□□□□ 0.61
HMGA1-203ENST00000374116 RGS17Q9UGC6 210 aaPredicted RBP18.87■□□□□ 0.61
HMGA1-203ENST00000374116 USP21Q9UK80 565 aa18.87■□□□□ 0.61
HMGA1-203ENST00000374116 COL18A1P39060 1754 aa18.86■□□□□ 0.61
HMGA1-203ENST00000374116 COL14A1Q05707 1796 aaKnown RBP18.86■□□□□ 0.61
HMGA1-203ENST00000374116 IRX6P78412 446 aaPredicted RBP18.86■□□□□ 0.61
HMGA1-203ENST00000374116 HSP90AB2PQ58FF8 381 aa18.86■□□□□ 0.61
HMGA1-203ENST00000374116 BCL9LQ86UU0 1499 aa18.85■□□□□ 0.61
HMGA1-203ENST00000374116 PPP2R1AP30153 589 aa18.85■□□□□ 0.61
HMGA1-203ENST00000374116 HOXC9P31274 260 aa18.85■□□□□ 0.61
HMGA1-203ENST00000374116 FNBP4Q8N3X1 1017 aaPredicted RBP18.85■□□□□ 0.61
HMGA1-203ENST00000374116 PPP4R2Q9NY27 417 aa18.85■□□□□ 0.61
HMGA1-203ENST00000374116 SLIT2O94813 1529 aa18.85■□□□□ 0.61
HMGA1-203ENST00000374116 LMO7Q8WWI1 1683 aa18.85■□□□□ 0.61
HMGA1-203ENST00000374116 MTHFSP49914 203 aa18.84■□□□□ 0.61
HMGA1-203ENST00000374116 AATKQ6ZMQ8 1374 aa18.84■□□□□ 0.61
HMGA1-203ENST00000374116 EVA1CP58658 441 aa18.84■□□□□ 0.61
HMGA1-203ENST00000374116 USP35Q9P2H5 1018 aa18.84■□□□□ 0.61
HMGA1-203ENST00000374116 LARP1Q6PKG0 1096 aaKnown RBP18.83■□□□□ 0.6
HMGA1-203ENST00000374116 UNC5CLQ8IV45 518 aa18.83■□□□□ 0.6
HMGA1-203ENST00000374116 IP6K1Q92551 441 aa18.83■□□□□ 0.6
HMGA1-203ENST00000374116 CCDC9Q9Y3X0 531 aaKnown RBP18.82■□□□□ 0.6
HMGA1-203ENST00000374116 BLMP54132 1417 aaPredicted RBP18.82■□□□□ 0.6
HMGA1-203ENST00000374116 CSB-PGBD3P0DP91 1061 aa18.81■□□□□ 0.6
HMGA1-203ENST00000374116 ANKRD24Q8TF21 1146 aa18.81■□□□□ 0.6
HMGA1-203ENST00000374116 NRAPQ86VF7 1730 aa18.81■□□□□ 0.6
HMGA1-203ENST00000374116 COL5A2P05997 1499 aaPredicted RBP18.81■□□□□ 0.6
HMGA1-203ENST00000374116 RNF123Q5XPI4 1314 aa18.8■□□□□ 0.6
HMGA1-203ENST00000374116 POTEAQ6S8J7 498 aa18.8■□□□□ 0.6
HMGA1-203ENST00000374116 QTRT2Q9H974 415 aaKnown RBP18.8■□□□□ 0.6
HMGA1-203ENST00000374116 FLT4P35916 1363 aa18.79■□□□□ 0.6
HMGA1-203ENST00000374116 NWD2Q9ULI1 1742 aa18.79■□□□□ 0.6
HMGA1-203ENST00000374116 DEKP35659 375 aaKnown RBP18.78■□□□□ 0.6
HMGA1-203ENST00000374116 TOM1L2Q6ZVM7 507 aa18.78■□□□□ 0.6
HMGA1-203ENST00000374116 RGPD2P0DJD1 1756 aa18.78■□□□□ 0.6
HMGA1-203ENST00000374116 ERBB3P21860 1342 aa18.78■□□□□ 0.6
HMGA1-203ENST00000374116 PDE3BQ13370 1112 aa18.77■□□□□ 0.6
HMGA1-203ENST00000374116 ZNF772Q68DY9 489 aaPredicted RBP18.77■□□□□ 0.59
HMGA1-203ENST00000374116 USHBP1Q8N6Y0 703 aa18.77■□□□□ 0.59
HMGA1-203ENST00000374116 NLRP2Q9NX02 1062 aa18.76■□□□□ 0.59
HMGA1-203ENST00000374116 RTL1A6NKG5 1358 aa18.75■□□□□ 0.59
HMGA1-203ENST00000374116 EIF4A2Q14240 407 aaKnown RBP18.75■□□□□ 0.59
HMGA1-203ENST00000374116 TRPC5Q9UL62 973 aaPredicted RBP18.75■□□□□ 0.59
HMGA1-203ENST00000374116 WDR17Q8IZU2 1322 aa18.75■□□□□ 0.59
HMGA1-203ENST00000374116 VPS72Q15906 364 aa18.74■□□□□ 0.59
HMGA1-203ENST00000374116 NBPF6Q5VWK0 638 aa18.74■□□□□ 0.59
HMGA1-203ENST00000374116 NBPF4Q96M43 638 aa18.74■□□□□ 0.59
HMGA1-203ENST00000374116 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.73■□□□□ 0.59
HMGA1-203ENST00000374116 ATRNO75882 1429 aa18.73■□□□□ 0.59
HMGA1-203ENST00000374116 GJD4Q96KN9 370 aaPredicted RBP18.73■□□□□ 0.59
HMGA1-203ENST00000374116 CDK12Q9NYV4 1490 aaPredicted RBP18.73■□□□□ 0.59
HMGA1-203ENST00000374116 ADAMTS8Q9UP79 889 aa18.72■□□□□ 0.59
HMGA1-203ENST00000374116 FAM98CQ17RN3 349 aaKnown RBP18.72■□□□□ 0.59
HMGA1-203ENST00000374116 SPATA31A5Q5VU36 1347 aa18.72■□□□□ 0.59
HMGA1-203ENST00000374116 SPATA31A7Q8IWB4 1347 aa18.72■□□□□ 0.59
HMGA1-203ENST00000374116 ABCC6O95255 1503 aa18.71■□□□□ 0.59
HMGA1-203ENST00000374116 SPATA31A1Q5TZJ5 1347 aa18.71■□□□□ 0.59
HMGA1-203ENST00000374116 KIF24Q5T7B8 1368 aa18.71■□□□□ 0.59
HMGA1-203ENST00000374116 CRB1P82279 1406 aa18.71■□□□□ 0.59
HMGA1-203ENST00000374116 GLI3P10071 1580 aa18.71■□□□□ 0.59
HMGA1-203ENST00000374116 EYA1Q99502 592 aa18.7■□□□□ 0.58
HMGA1-203ENST00000374116 IL13P35225 146 aa18.7■□□□□ 0.58
HMGA1-203ENST00000374116 SENP3-EIF4A1A0A087X0R7 540 aa18.69■□□□□ 0.58
HMGA1-203ENST00000374116 A0A0G2JS52 829 aa18.69■□□□□ 0.58
HMGA1-203ENST00000374116 DIAPH1O60610 1272 aaKnown RBP18.68■□□□□ 0.58
HMGA1-203ENST00000374116 RXRBP28702 533 aa18.68■□□□□ 0.58
HMGA1-203ENST00000374116 COL3A1P02461 1466 aaPredicted RBP18.68■□□□□ 0.58
HMGA1-203ENST00000374116 U2SURPO15042 1029 aaKnown RBP18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms