RNA–Protein interactions for RNA: ENST00000372077.8

VEGFA-206, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best) BASIC

Gene VEGFA, Length 2,834 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-206ENST00000372077 LTN1O94822 1766 aa24.41■■□□□ 1.5
VEGFA-206ENST00000372077 RTL1A6NKG5 1358 aa24.41■■□□□ 1.5
VEGFA-206ENST00000372077 HSP90AB2PQ58FF8 381 aa24.41■■□□□ 1.5
VEGFA-206ENST00000372077 ARHGEF25Q86VW2 580 aa24.4■■□□□ 1.5
VEGFA-206ENST00000372077 U2AF1L5P0DN76 240 aaPredicted RBP24.4■■□□□ 1.5
VEGFA-206ENST00000372077 U2AF1Q01081 240 aaKnown RBP eCLIP24.4■■□□□ 1.52e-10■□□□□ 9.4
VEGFA-206ENST00000372077 HOXC9P31274 260 aa24.39■■□□□ 1.5
VEGFA-206ENST00000372077 B4GALNT3Q6L9W6 998 aa24.39■■□□□ 1.5
VEGFA-206ENST00000372077 U2SURPO15042 1029 aaKnown RBP24.39■■□□□ 1.49
VEGFA-206ENST00000372077 ZBED9Q6R2W3 1325 aa24.39■■□□□ 1.49
VEGFA-206ENST00000372077 EIF4A2Q14240 407 aaKnown RBP24.39■■□□□ 1.49
VEGFA-206ENST00000372077 IP6K1Q92551 441 aa24.38■■□□□ 1.49
VEGFA-206ENST00000372077 UBAP1LF5GYI3 381 aa24.37■■□□□ 1.49
VEGFA-206ENST00000372077 SALL2Q9Y467 1007 aaPredicted RBP24.37■■□□□ 1.49
VEGFA-206ENST00000372077 LRRC59Q96AG4 307 aaKnown RBP24.36■■□□□ 1.49
VEGFA-206ENST00000372077 CCDC146Q8IYE0 955 aa24.35■■□□□ 1.49
VEGFA-206ENST00000372077 CABLES1Q8TDN4 633 aa24.35■■□□□ 1.49
VEGFA-206ENST00000372077 PLEKHG5O94827 1062 aa24.34■■□□□ 1.49
VEGFA-206ENST00000372077 RUNDC1Q96C34 613 aa24.34■■□□□ 1.49
VEGFA-206ENST00000372077 RGPD1P0DJD0 1748 aa24.34■■□□□ 1.49
VEGFA-206ENST00000372077 PIP4K2BP78356 416 aa24.33■■□□□ 1.49
VEGFA-206ENST00000372077 FCHSD2O94868 740 aa24.33■■□□□ 1.48
VEGFA-206ENST00000372077 PLEKHF1Q96S99 279 aa24.33■■□□□ 1.48
VEGFA-206ENST00000372077 PHLPP1O60346 1717 aa24.32■■□□□ 1.48
VEGFA-206ENST00000372077 COL16A1Q07092 1604 aaPredicted RBP24.31■■□□□ 1.48
VEGFA-206ENST00000372077 CPDO75976 1380 aa24.31■■□□□ 1.48
VEGFA-206ENST00000372077 ABCA3Q99758 1704 aa24.31■■□□□ 1.48
VEGFA-206ENST00000372077 ZC3H6P61129 1189 aaKnown RBP24.31■■□□□ 1.48
VEGFA-206ENST00000372077 RSPH6AQ9H0K4 717 aa24.3■■□□□ 1.48
VEGFA-206ENST00000372077 PNNQ9H307 717 aaKnown RBP24.3■■□□□ 1.48
VEGFA-206ENST00000372077 APAF1O14727 1248 aa24.3■■□□□ 1.48
VEGFA-206ENST00000372077 ABCC6O95255 1503 aa24.29■■□□□ 1.48
VEGFA-206ENST00000372077 COL22A1Q8NFW1 1626 aaPredicted RBP24.29■■□□□ 1.48
VEGFA-206ENST00000372077 COL18A1P39060 1754 aa24.29■■□□□ 1.48
VEGFA-206ENST00000372077 ZBTB7CA1YPR0 619 aa24.28■■□□□ 1.48
VEGFA-206ENST00000372077 NGEFQ8N5V2 710 aa24.27■■□□□ 1.48
VEGFA-206ENST00000372077 IGSF1Q8N6C5 1336 aa24.26■■□□□ 1.47
VEGFA-206ENST00000372077 HMOX1P09601 288 aa24.26■■□□□ 1.47
VEGFA-206ENST00000372077 TCP11L2Q8N4U5 519 aa24.26■■□□□ 1.47
VEGFA-206ENST00000372077 EYA1Q99502 592 aa24.26■■□□□ 1.47
VEGFA-206ENST00000372077 NCBP3Q53F19 620 aaKnown RBP24.25■■□□□ 1.47
VEGFA-206ENST00000372077 AXIN2Q9Y2T1 843 aa24.25■■□□□ 1.47
VEGFA-206ENST00000372077 KIAA0232Q92628 1395 aa24.25■■□□□ 1.47
VEGFA-206ENST00000372077 PRKAR2BP31323 418 aa24.25■■□□□ 1.47
VEGFA-206ENST00000372077 MSH5O43196 834 aa24.24■■□□□ 1.47
VEGFA-206ENST00000372077 SULT6B1Q6IMI4 303 aa24.24■■□□□ 1.47
VEGFA-206ENST00000372077 KDRP35968 1356 aa24.23■■□□□ 1.47
VEGFA-206ENST00000372077 LTV1Q96GA3 475 aaPredicted RBP24.23■■□□□ 1.47
VEGFA-206ENST00000372077 AEBP1Q8IUX7 1158 aa24.22■■□□□ 1.47
VEGFA-206ENST00000372077 RGPD5Q99666 1765 aa24.22■■□□□ 1.47
VEGFA-206ENST00000372077 ZNF521Q96K83 1311 aa24.22■■□□□ 1.47
VEGFA-206ENST00000372077 MAPK8IP3Q9UPT6 1336 aa24.21■■□□□ 1.47
VEGFA-206ENST00000372077 HAP1P54257 671 aaPredicted RBP24.21■■□□□ 1.47
VEGFA-206ENST00000372077 ANKRD24Q8TF21 1146 aa24.2■■□□□ 1.47
VEGFA-206ENST00000372077 CHRNA2Q15822 529 aa24.2■■□□□ 1.46
VEGFA-206ENST00000372077 PHF23Q9BUL5 403 aaPredicted RBP24.19■■□□□ 1.46
VEGFA-206ENST00000372077 TMPOP42166 694 aaKnown RBP24.19■■□□□ 1.46
VEGFA-206ENST00000372077 PDE3BQ13370 1112 aa24.19■■□□□ 1.46
VEGFA-206ENST00000372077 PHACTR3Q96KR7 559 aa24.19■■□□□ 1.46
VEGFA-206ENST00000372077 LMO7Q8WWI1 1683 aa24.18■■□□□ 1.46
VEGFA-206ENST00000372077 CCDC27Q2M243 656 aa24.18■■□□□ 1.46
VEGFA-206ENST00000372077 PRDM11Q9NQV5 511 aa24.18■■□□□ 1.46
VEGFA-206ENST00000372077 ERBB3P21860 1342 aa24.18■■□□□ 1.46
VEGFA-206ENST00000372077 NEFMP07197 916 aa24.18■■□□□ 1.46
VEGFA-206ENST00000372077 NBPF6Q5VWK0 638 aa24.18■■□□□ 1.46
VEGFA-206ENST00000372077 NBPF4Q96M43 638 aa24.18■■□□□ 1.46
VEGFA-206ENST00000372077 NCAPD2Q15021 1401 aa24.18■■□□□ 1.46
VEGFA-206ENST00000372077 RRP7AQ9Y3A4 280 aaKnown RBP24.17■■□□□ 1.46
VEGFA-206ENST00000372077 CAMTA1Q9Y6Y1 1673 aa24.17■■□□□ 1.46
VEGFA-206ENST00000372077 RGPD2P0DJD1 1756 aa24.16■■□□□ 1.46
VEGFA-206ENST00000372077 WWC1Q8IX03 1113 aa24.14■■□□□ 1.46
VEGFA-206ENST00000372077 NEUROD2Q15784 382 aa24.14■■□□□ 1.45
VEGFA-206ENST00000372077 NFE2L2Q16236 605 aa24.14■■□□□ 1.45
VEGFA-206ENST00000372077 FAM83GA6ND36 823 aa24.13■■□□□ 1.45
VEGFA-206ENST00000372077 FAM208AQ9UK61 1670 aaKnown RBP24.12■■□□□ 1.45
VEGFA-206ENST00000372077 USHBP1Q8N6Y0 703 aa24.11■■□□□ 1.45
VEGFA-206ENST00000372077 RIPK4P57078 832 aa24.11■■□□□ 1.45
VEGFA-206ENST00000372077 TRIM35Q9UPQ4 493 aa24.11■■□□□ 1.45
VEGFA-206ENST00000372077 JCADQ9P266 1359 aa24.1■■□□□ 1.45
VEGFA-206ENST00000372077 GOLGA2Q08379 1002 aa24.1■■□□□ 1.45
VEGFA-206ENST00000372077 ERICH6Q7L0X2 663 aa24.1■■□□□ 1.45
VEGFA-206ENST00000372077 CDCA7LQ96GN5 454 aa24.1■■□□□ 1.45
VEGFA-206ENST00000372077 COL5A2P05997 1499 aaPredicted RBP24.09■■□□□ 1.45
VEGFA-206ENST00000372077 COL14A1Q05707 1796 aaKnown RBP24.09■■□□□ 1.45
VEGFA-206ENST00000372077 WDR63Q8IWG1 891 aa24.09■■□□□ 1.45
VEGFA-206ENST00000372077 PPP4R2Q9NY27 417 aa24.07■■□□□ 1.44
VEGFA-206ENST00000372077 WDR17Q8IZU2 1322 aa24.06■■□□□ 1.44
VEGFA-206ENST00000372077 CSB-PGBD3P0DP91 1061 aa24.06■■□□□ 1.44
VEGFA-206ENST00000372077 SLFN5Q08AF3 891 aa24.06■■□□□ 1.44
VEGFA-206ENST00000372077 DLG5Q8TDM6 1919 aa24.06■■□□□ 1.44
VEGFA-206ENST00000372077 NLRP2Q9NX02 1062 aa24.06■■□□□ 1.44
VEGFA-206ENST00000372077 MTHFSDQ2M296 383 aaKnown RBP24.05■■□□□ 1.44
VEGFA-206ENST00000372077 TRMT2AQ8IZ69 625 aaKnown RBP24.05■■□□□ 1.44
VEGFA-206ENST00000372077 SPINK5Q9NQ38 1064 aaPredicted RBP24.04■■□□□ 1.44
VEGFA-206ENST00000372077 HSPA1LP34931 641 aa24.03■■□□□ 1.44
VEGFA-206ENST00000372077 GAS2L2Q8NHY3 880 aa24.03■■□□□ 1.44
VEGFA-206ENST00000372077 E9PSI1 815 aa24.02■■□□□ 1.44
VEGFA-206ENST00000372077 LMOD3Q0VAK6 560 aa24.02■■□□□ 1.44
VEGFA-206ENST00000372077 BTG4Q9NY30 223 aa24.02■■□□□ 1.44
VEGFA-206ENST00000372077 DUSP27Q5VZP5 1158 aa24.02■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 147.8 ms