RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 USP6P35125 1406 aa20.05■□□□□ 0.8
VPS29-201ENST00000360579 NBPF1Q3BBV0 1214 aa20.05■□□□□ 0.8
VPS29-201ENST00000360579 PEAK1Q9H792 1746 aa20.05■□□□□ 0.8
VPS29-201ENST00000360579 SLIT3O75094 1523 aa20.04■□□□□ 0.8
VPS29-201ENST00000360579 CABP1Q9NZU7 370 aa20.03■□□□□ 0.8
VPS29-201ENST00000360579 WDR17Q8IZU2 1322 aa20.02■□□□□ 0.8
VPS29-201ENST00000360579 BCL9O00512 1426 aa20.02■□□□□ 0.8
VPS29-201ENST00000360579 LRRC37A3O60309 1634 aa20.02■□□□□ 0.8
VPS29-201ENST00000360579 ANO8Q9HCE9 1232 aaPredicted RBP20.01■□□□□ 0.79
VPS29-201ENST00000360579 RNF216Q9NWF9 866 aaPredicted RBP20.01■□□□□ 0.79
VPS29-201ENST00000360579 KCNH5Q8NCM2 988 aa19.99■□□□□ 0.79
VPS29-201ENST00000360579 MARCH10Q8NA82 808 aaPredicted RBP19.98■□□□□ 0.79
VPS29-201ENST00000360579 CPSF1Q10570 1443 aaKnown RBP19.98■□□□□ 0.79
VPS29-201ENST00000360579 SBF2Q86WG5 1849 aa19.97■□□□□ 0.79
VPS29-201ENST00000360579 ZNF692Q9BU19 519 aaPredicted RBP19.97■□□□□ 0.79
VPS29-201ENST00000360579 CARD10Q9BWT7 1032 aa19.97■□□□□ 0.79
VPS29-201ENST00000360579 AXIN2Q9Y2T1 843 aa19.97■□□□□ 0.79
VPS29-201ENST00000360579 EVC2Q86UK5 1308 aa19.97■□□□□ 0.79
VPS29-201ENST00000360579 CASZ1Q86V15 1759 aa19.96■□□□□ 0.79
VPS29-201ENST00000360579 ARHGEF25Q86VW2 580 aa19.96■□□□□ 0.79
VPS29-201ENST00000360579 PROM2Q8N271 834 aa19.96■□□□□ 0.79
VPS29-201ENST00000360579 STK32BQ9NY57 414 aa19.96■□□□□ 0.79
VPS29-201ENST00000360579 UTRNP46939 3433 aa19.95■□□□□ 0.78
VPS29-201ENST00000360579 QRICH2Q9H0J4 1663 aa19.95■□□□□ 0.78
VPS29-201ENST00000360579 ZBTB7AO95365 584 aa19.95■□□□□ 0.78
VPS29-201ENST00000360579 CSB-PGBD3P0DP91 1061 aa19.95■□□□□ 0.78
VPS29-201ENST00000360579 NCBP3Q53F19 620 aaKnown RBP19.95■□□□□ 0.78
VPS29-201ENST00000360579 PTF1AQ7RTS3 328 aa19.95■□□□□ 0.78
VPS29-201ENST00000360579 COL18A1P39060 1754 aa19.95■□□□□ 0.78
VPS29-201ENST00000360579 PIK3C2AO00443 1686 aa19.94■□□□□ 0.78
VPS29-201ENST00000360579 EXOC5O00471 708 aa19.94■□□□□ 0.78
VPS29-201ENST00000360579 TXNRD1Q16881 649 aa19.94■□□□□ 0.78
VPS29-201ENST00000360579 PTGER2P43116 358 aa19.93■□□□□ 0.78
VPS29-201ENST00000360579 TTC21BQ7Z4L5 1316 aa19.93■□□□□ 0.78
VPS29-201ENST00000360579 TTC21AQ8NDW8 1320 aa19.93■□□□□ 0.78
VPS29-201ENST00000360579 CCDC7Q96M83 1385 aa19.93■□□□□ 0.78
VPS29-201ENST00000360579 WNK3Q9BYP7 1800 aa19.92■□□□□ 0.78
VPS29-201ENST00000360579 SLC15A2Q16348 729 aa19.92■□□□□ 0.78
VPS29-201ENST00000360579 PDGFDQ9GZP0 370 aaPredicted RBP19.92■□□□□ 0.78
VPS29-201ENST00000360579 AKAP12Q02952 1782 aa19.91■□□□□ 0.78
VPS29-201ENST00000360579 MTFR1LQ9H019 292 aa19.9■□□□□ 0.78
VPS29-201ENST00000360579 ATF5Q9Y2D1 282 aaPredicted RBP19.9■□□□□ 0.78
VPS29-201ENST00000360579 SOX12O15370 315 aa19.89■□□□□ 0.77
VPS29-201ENST00000360579 ABCC6O95255 1503 aa19.89■□□□□ 0.77
VPS29-201ENST00000360579 TRPM1Q7Z4N2 1603 aa19.89■□□□□ 0.77
VPS29-201ENST00000360579 TNS2Q63HR2 1409 aa19.88■□□□□ 0.77
VPS29-201ENST00000360579 MYOM1P52179 1685 aa19.87■□□□□ 0.77
VPS29-201ENST00000360579 SYT17Q9BSW7 474 aa19.87■□□□□ 0.77
VPS29-201ENST00000360579 FHDC1Q9C0D6 1143 aaPredicted RBP19.87■□□□□ 0.77
VPS29-201ENST00000360579 ZNF784Q8NCA9 323 aaPredicted RBP19.86■□□□□ 0.77
VPS29-201ENST00000360579 NFAT5O94916 1531 aa19.85■□□□□ 0.77
VPS29-201ENST00000360579 KTN1Q86UP2 1357 aaKnown RBP19.84■□□□□ 0.77
VPS29-201ENST00000360579 L3MBTL2Q969R5 705 aa19.84■□□□□ 0.77
VPS29-201ENST00000360579 SGIP1Q9BQI5 828 aa19.83■□□□□ 0.77
VPS29-201ENST00000360579 ROCK2O75116 1388 aaKnown RBP19.83■□□□□ 0.76
VPS29-201ENST00000360579 ARXQ96QS3 562 aa19.82■□□□□ 0.76
VPS29-201ENST00000360579 NHSQ6T4R5 1651 aa19.81■□□□□ 0.76
VPS29-201ENST00000360579 ERBB3P21860 1342 aa19.81■□□□□ 0.76
VPS29-201ENST00000360579 MAP3K5Q99683 1374 aa19.81■□□□□ 0.76
VPS29-201ENST00000360579 RGPD5Q99666 1765 aa19.8■□□□□ 0.76
VPS29-201ENST00000360579 IL2RBP14784 551 aa19.8■□□□□ 0.76
VPS29-201ENST00000360579 ACSBG1Q96GR2 724 aa19.8■□□□□ 0.76
VPS29-201ENST00000360579 NLRP2Q9NX02 1062 aa19.8■□□□□ 0.76
VPS29-201ENST00000360579 USP31Q70CQ4 1352 aa19.8■□□□□ 0.76
VPS29-201ENST00000360579 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.77■□□□□ 0.76
VPS29-201ENST00000360579 PAPPAQ13219 1627 aa19.76■□□□□ 0.75
VPS29-201ENST00000360579 SBNO2Q9Y2G9 1366 aa19.75■□□□□ 0.75
VPS29-201ENST00000360579 SLC16A10Q8TF71 515 aa19.75■□□□□ 0.75
VPS29-201ENST00000360579 MON2Q7Z3U7 1717 aa19.74■□□□□ 0.75
VPS29-201ENST00000360579 SLC27A3Q5K4L6 730 aa19.74■□□□□ 0.75
VPS29-201ENST00000360579 ANKRD24Q8TF21 1146 aa19.74■□□□□ 0.75
VPS29-201ENST00000360579 USP54Q70EL1 1684 aa19.73■□□□□ 0.75
VPS29-201ENST00000360579 ZNF827Q17R98 1081 aa19.73■□□□□ 0.75
VPS29-201ENST00000360579 HDGFL2Q7Z4V5 671 aaPredicted RBP19.73■□□□□ 0.75
VPS29-201ENST00000360579 NME9Q86XW9 330 aa19.73■□□□□ 0.75
VPS29-201ENST00000360579 SENP3-EIF4A1A0A087X0R7 540 aa19.72■□□□□ 0.75
VPS29-201ENST00000360579 POLD1P28340 1107 aa19.72■□□□□ 0.75
VPS29-201ENST00000360579 C1QTNF8P60827 252 aa19.72■□□□□ 0.75
VPS29-201ENST00000360579 GPR162Q16538 588 aa19.72■□□□□ 0.75
VPS29-201ENST00000360579 CHD4Q14839 1912 aa19.72■□□□□ 0.75
VPS29-201ENST00000360579 LRRC4BQ9NT99 713 aa19.71■□□□□ 0.75
VPS29-201ENST00000360579 BTAF1O14981 1849 aa19.7■□□□□ 0.74
VPS29-201ENST00000360579 AKT1S1Q96B36 256 aa19.7■□□□□ 0.74
VPS29-201ENST00000360579 NPM3O75607 178 aaKnown RBP19.69■□□□□ 0.74
VPS29-201ENST00000360579 TMC1Q8TDI8 760 aa19.69■□□□□ 0.74
VPS29-201ENST00000360579 EDC4Q6P2E9 1401 aaKnown RBP19.68■□□□□ 0.74
VPS29-201ENST00000360579 CD163L1Q9NR16 1453 aa19.68■□□□□ 0.74
VPS29-201ENST00000360579 SIN3AQ96ST3 1273 aa19.68■□□□□ 0.74
VPS29-201ENST00000360579 TERF2IPQ9NYB0 399 aa19.68■□□□□ 0.74
VPS29-201ENST00000360579 GOLGB1Q14789 3259 aaKnown RBP19.68■□□□□ 0.74
VPS29-201ENST00000360579 LTN1O94822 1766 aa19.67■□□□□ 0.74
VPS29-201ENST00000360579 NEUROD1Q13562 356 aa19.67■□□□□ 0.74
VPS29-201ENST00000360579 DDX54Q8TDD1 881 aaKnown RBP19.67■□□□□ 0.74
VPS29-201ENST00000360579 KLHL34Q8N239 644 aa19.66■□□□□ 0.74
VPS29-201ENST00000360579 IP6K1Q92551 441 aa19.66■□□□□ 0.74
VPS29-201ENST00000360579 TFCP2L1Q9NZI6 479 aa19.66■□□□□ 0.74
VPS29-201ENST00000360579 PNPLA7Q6ZV29 1317 aa19.65■□□□□ 0.74
VPS29-201ENST00000360579 GIGYF1O75420 1035 aaPredicted RBP19.64■□□□□ 0.73
VPS29-201ENST00000360579 PUS7Q96PZ0 661 aaKnown RBP19.64■□□□□ 0.73
VPS29-201ENST00000360579 CARD11Q9BXL7 1154 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms