RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 ARHGEF25Q86VW2 580 aa24.62■■□□□ 1.53
CLN3-206ENST00000360019 RSPH6AQ9H0K4 717 aa24.62■■□□□ 1.53
CLN3-206ENST00000360019 RGPD1P0DJD0 1748 aa24.62■■□□□ 1.53
CLN3-206ENST00000360019 FCHSD2O94868 740 aa24.61■■□□□ 1.53
CLN3-206ENST00000360019 HMOX1P09601 288 aa24.61■■□□□ 1.53
CLN3-206ENST00000360019 TCP11L2Q8N4U5 519 aa24.61■■□□□ 1.53
CLN3-206ENST00000360019 IP6K1Q92551 441 aa24.61■■□□□ 1.53
CLN3-206ENST00000360019 CABLES1Q8TDN4 633 aa24.6■■□□□ 1.53
CLN3-206ENST00000360019 ZNF521Q96K83 1311 aa24.59■■□□□ 1.53
CLN3-206ENST00000360019 AHDC1Q5TGY3 1603 aaPredicted RBP24.58■■□□□ 1.53
CLN3-206ENST00000360019 PRKAR2BP31323 418 aa24.58■■□□□ 1.53
CLN3-206ENST00000360019 ZBTB7CA1YPR0 619 aa24.57■■□□□ 1.52
CLN3-206ENST00000360019 PNNQ9H307 717 aaKnown RBP24.56■■□□□ 1.52
CLN3-206ENST00000360019 RRP7AQ9Y3A4 280 aaKnown RBP24.56■■□□□ 1.52
CLN3-206ENST00000360019 ZC3H6P61129 1189 aaKnown RBP24.56■■□□□ 1.52
CLN3-206ENST00000360019 AEBP1Q8IUX7 1158 aa24.56■■□□□ 1.52
CLN3-206ENST00000360019 NGEFQ8N5V2 710 aa24.56■■□□□ 1.52
CLN3-206ENST00000360019 MAPK8IP3Q9UPT6 1336 aa24.55■■□□□ 1.52
CLN3-206ENST00000360019 TOM1O60784 492 aa24.55■■□□□ 1.52
CLN3-206ENST00000360019 PDE3BQ13370 1112 aa24.54■■□□□ 1.52
CLN3-206ENST00000360019 SULT6B1Q6IMI4 303 aa24.54■■□□□ 1.52
CLN3-206ENST00000360019 IGSF1Q8N6C5 1336 aa24.54■■□□□ 1.52
CLN3-206ENST00000360019 CDCA7LQ96GN5 454 aa24.54■■□□□ 1.52
CLN3-206ENST00000360019 EYA1Q99502 592 aa24.54■■□□□ 1.52
CLN3-206ENST00000360019 NEUROD2Q15784 382 aa24.53■■□□□ 1.52
CLN3-206ENST00000360019 LTV1Q96GA3 475 aaPredicted RBP24.53■■□□□ 1.52
CLN3-206ENST00000360019 PHF23Q9BUL5 403 aaPredicted RBP24.52■■□□□ 1.52
CLN3-206ENST00000360019 PHACTR3Q96KR7 559 aa24.51■■□□□ 1.51
CLN3-206ENST00000360019 AXIN2Q9Y2T1 843 aa24.51■■□□□ 1.51
CLN3-206ENST00000360019 TMPOP42166 694 aaKnown RBP24.51■■□□□ 1.51
CLN3-206ENST00000360019 NCBP3Q53F19 620 aaKnown RBP24.51■■□□□ 1.51
CLN3-206ENST00000360019 ABCA3Q99758 1704 aa24.51■■□□□ 1.51
CLN3-206ENST00000360019 KDRP35968 1356 aa24.51■■□□□ 1.51
CLN3-206ENST00000360019 WWC1Q8IX03 1113 aa24.5■■□□□ 1.51
CLN3-206ENST00000360019 CPDO75976 1380 aa24.5■■□□□ 1.51
CLN3-206ENST00000360019 PIP4K2BP78356 416 aa24.49■■□□□ 1.51
CLN3-206ENST00000360019 KIAA0232Q92628 1395 aa24.49■■□□□ 1.51
CLN3-206ENST00000360019 CCDC27Q2M243 656 aa24.49■■□□□ 1.51
CLN3-206ENST00000360019 LRRC59Q96AG4 307 aaKnown RBP24.49■■□□□ 1.51
CLN3-206ENST00000360019 COL18A1P39060 1754 aa24.48■■□□□ 1.51
CLN3-206ENST00000360019 UBAP1LF5GYI3 381 aa24.48■■□□□ 1.51
CLN3-206ENST00000360019 GOLGA2Q08379 1002 aa24.47■■□□□ 1.51
CLN3-206ENST00000360019 NEFMP07197 916 aa24.47■■□□□ 1.51
CLN3-206ENST00000360019 RGPD5Q99666 1765 aa24.46■■□□□ 1.51
CLN3-206ENST00000360019 CERKQ8TCT0 537 aa24.46■■□□□ 1.51
CLN3-206ENST00000360019 COL16A1Q07092 1604 aaPredicted RBP24.46■■□□□ 1.51
CLN3-206ENST00000360019 ABCC6O95255 1503 aa24.46■■□□□ 1.51
CLN3-206ENST00000360019 ANKRD24Q8TF21 1146 aa24.45■■□□□ 1.5
CLN3-206ENST00000360019 PHLPP1O60346 1717 aa24.45■■□□□ 1.5
CLN3-206ENST00000360019 RIPK4P57078 832 aa24.45■■□□□ 1.5
CLN3-206ENST00000360019 CHRNA2Q15822 529 aa24.45■■□□□ 1.5
CLN3-206ENST00000360019 NBPF6Q5VWK0 638 aa24.45■■□□□ 1.5
CLN3-206ENST00000360019 NBPF4Q96M43 638 aa24.45■■□□□ 1.5
CLN3-206ENST00000360019 SPINK5Q9NQ38 1064 aaPredicted RBP24.45■■□□□ 1.5
CLN3-206ENST00000360019 TRIM35Q9UPQ4 493 aa24.45■■□□□ 1.5
CLN3-206ENST00000360019 NFE2L2Q16236 605 aa24.44■■□□□ 1.5
CLN3-206ENST00000360019 ERBB3P21860 1342 aa24.43■■□□□ 1.5
CLN3-206ENST00000360019 RGPD2P0DJD1 1756 aa24.43■■□□□ 1.5
CLN3-206ENST00000360019 SLFN5Q08AF3 891 aa24.42■■□□□ 1.5
CLN3-206ENST00000360019 USHBP1Q8N6Y0 703 aa24.42■■□□□ 1.5
CLN3-206ENST00000360019 COL22A1Q8NFW1 1626 aaPredicted RBP24.42■■□□□ 1.5
CLN3-206ENST00000360019 HAP1P54257 671 aaPredicted RBP24.42■■□□□ 1.5
CLN3-206ENST00000360019 NCAPD2Q15021 1401 aa24.4■■□□□ 1.5
CLN3-206ENST00000360019 DUSP27Q5VZP5 1158 aa24.4■■□□□ 1.5
CLN3-206ENST00000360019 WDR63Q8IWG1 891 aa24.4■■□□□ 1.5
CLN3-206ENST00000360019 CAMTA1Q9Y6Y1 1673 aa24.4■■□□□ 1.5
CLN3-206ENST00000360019 TRMT2AQ8IZ69 625 aaKnown RBP24.4■■□□□ 1.5
CLN3-206ENST00000360019 PRDM11Q9NQV5 511 aa24.4■■□□□ 1.5
CLN3-206ENST00000360019 LMO7Q8WWI1 1683 aa24.38■■□□□ 1.49
CLN3-206ENST00000360019 E9PSI1 815 aa24.38■■□□□ 1.49
CLN3-206ENST00000360019 DLG5Q8TDM6 1919 aa24.37■■□□□ 1.49
CLN3-206ENST00000360019 MTHFSDQ2M296 383 aaKnown RBP24.35■■□□□ 1.49
CLN3-206ENST00000360019 SUPT16HQ9Y5B9 1047 aaKnown RBP24.34■■□□□ 1.49
CLN3-206ENST00000360019 GTF3C3Q9Y5Q9 886 aa24.34■■□□□ 1.49
CLN3-206ENST00000360019 FAM83GA6ND36 823 aa24.32■■□□□ 1.48
CLN3-206ENST00000360019 FAM208AQ9UK61 1670 aaKnown RBP24.32■■□□□ 1.48
CLN3-206ENST00000360019 COL5A2P05997 1499 aaPredicted RBP24.31■■□□□ 1.48
CLN3-206ENST00000360019 CSB-PGBD3P0DP91 1061 aa24.31■■□□□ 1.48
CLN3-206ENST00000360019 LMOD3Q0VAK6 560 aa24.31■■□□□ 1.48
CLN3-206ENST00000360019 THUMPD2Q9BTF0 503 aaKnown RBP24.31■■□□□ 1.48
CLN3-206ENST00000360019 NLRP2Q9NX02 1062 aa24.31■■□□□ 1.48
CLN3-206ENST00000360019 IL16Q14005 1332 aa24.3■■□□□ 1.48
CLN3-206ENST00000360019 GAS2L2Q8NHY3 880 aa24.3■■□□□ 1.48
CLN3-206ENST00000360019 DCTN1Q14203 1278 aa24.28■■□□□ 1.48
CLN3-206ENST00000360019 WDR17Q8IZU2 1322 aa24.28■■□□□ 1.48
CLN3-206ENST00000360019 RCAN3Q9UKA8 241 aa24.27■■□□□ 1.48
CLN3-206ENST00000360019 MYH16Q9H6N6 1097 aa24.26■■□□□ 1.47
CLN3-206ENST00000360019 COL14A1Q05707 1796 aaKnown RBP24.25■■□□□ 1.47
CLN3-206ENST00000360019 FANCIQ9NVI1 1328 aa24.25■■□□□ 1.47
CLN3-206ENST00000360019 TSR2Q969E8 191 aaKnown RBP24.24■■□□□ 1.47
CLN3-206ENST00000360019 CALD1Q05682 793 aaKnown RBP24.24■■□□□ 1.47
CLN3-206ENST00000360019 MCM10Q7L590 875 aa24.24■■□□□ 1.47
CLN3-206ENST00000360019 RNF123Q5XPI4 1314 aa24.23■■□□□ 1.47
CLN3-206ENST00000360019 BTG4Q9NY30 223 aa24.23■■□□□ 1.47
CLN3-206ENST00000360019 MEGF6O75095 1541 aa24.22■■□□□ 1.47
CLN3-206ENST00000360019 MAP3K5Q99683 1374 aa24.22■■□□□ 1.47
CLN3-206ENST00000360019 GNAT3A8MTJ3 354 aa24.21■■□□□ 1.47
CLN3-206ENST00000360019 PLEKHO1Q53GL0 409 aaPredicted RBP24.21■■□□□ 1.47
CLN3-206ENST00000360019 TOM1L2Q6ZVM7 507 aa24.21■■□□□ 1.47
CLN3-206ENST00000360019 STRN4Q9NRL3 753 aa24.21■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 169.2 ms