RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 EVA1CP58658 441 aa23.44■■□□□ 1.34
CLN3-203ENST00000357806 CARD14Q9BXL6 1004 aa23.44■■□□□ 1.34
CLN3-203ENST00000357806 KIF7Q2M1P5 1343 aa23.44■■□□□ 1.34
CLN3-203ENST00000357806 SPATA31A5Q5VU36 1347 aa23.44■■□□□ 1.34
CLN3-203ENST00000357806 SPATA31A7Q8IWB4 1347 aa23.44■■□□□ 1.34
CLN3-203ENST00000357806 FYB1O15117 783 aa23.43■■□□□ 1.34
CLN3-203ENST00000357806 MAP2P11137 1827 aaKnown RBP23.42■■□□□ 1.34
CLN3-203ENST00000357806 GGNBP2Q9H3C7 697 aa23.42■■□□□ 1.34
CLN3-203ENST00000357806 CGNL1Q0VF96 1302 aa23.41■■□□□ 1.34
CLN3-203ENST00000357806 SPATA31A1Q5TZJ5 1347 aa23.41■■□□□ 1.34
CLN3-203ENST00000357806 CRB1P82279 1406 aa23.4■■□□□ 1.34
CLN3-203ENST00000357806 PARP4Q9UKK3 1724 aaKnown RBP23.39■■□□□ 1.33
CLN3-203ENST00000357806 LARP1Q6PKG0 1096 aaKnown RBP23.38■■□□□ 1.33
CLN3-203ENST00000357806 PANK3Q9H999 370 aa23.38■■□□□ 1.33
CLN3-203ENST00000357806 FAM98CQ17RN3 349 aaKnown RBP23.37■■□□□ 1.33
CLN3-203ENST00000357806 AXIN2Q9Y2T1 843 aa23.37■■□□□ 1.33
CLN3-203ENST00000357806 CCDC7Q96M83 1385 aa23.37■■□□□ 1.33
CLN3-203ENST00000357806 ONECUT3O60422 494 aaPredicted RBP23.36■■□□□ 1.33
CLN3-203ENST00000357806 BLMP54132 1417 aaPredicted RBP23.36■■□□□ 1.33
CLN3-203ENST00000357806 WDR17Q8IZU2 1322 aa23.36■■□□□ 1.33
CLN3-203ENST00000357806 A0A0G2JS52 829 aa23.36■■□□□ 1.33
CLN3-203ENST00000357806 MYT1Q01538 1121 aa23.36■■□□□ 1.33
CLN3-203ENST00000357806 SEPT12Q8IYM1 358 aa23.36■■□□□ 1.33
CLN3-203ENST00000357806 RGPD2P0DJD1 1756 aa23.35■■□□□ 1.33
CLN3-203ENST00000357806 PEAK1Q9H792 1746 aa23.35■■□□□ 1.33
CLN3-203ENST00000357806 USP35Q9P2H5 1018 aa23.35■■□□□ 1.33
CLN3-203ENST00000357806 EP400Q96L91 3159 aa23.33■■□□□ 1.33
CLN3-203ENST00000357806 RTL1A6NKG5 1358 aa23.33■■□□□ 1.33
CLN3-203ENST00000357806 NSD2O96028 1365 aa23.33■■□□□ 1.33
CLN3-203ENST00000357806 WASHC2AQ641Q2 1341 aa23.33■■□□□ 1.33
CLN3-203ENST00000357806 TOM1L2Q6ZVM7 507 aa23.33■■□□□ 1.33
CLN3-203ENST00000357806 THRAP3Q9Y2W1 955 aaKnown RBP23.33■■□□□ 1.33
CLN3-203ENST00000357806 LRRC37A3O60309 1634 aa23.32■■□□□ 1.32
CLN3-203ENST00000357806 MAP3K19Q56UN5 1328 aa23.32■■□□□ 1.32
CLN3-203ENST00000357806 TCP11L2Q8N4U5 519 aa23.32■■□□□ 1.32
CLN3-203ENST00000357806 ERBB3P21860 1342 aa23.32■■□□□ 1.32
CLN3-203ENST00000357806 CSB-PGBD3P0DP91 1061 aa23.31■■□□□ 1.32
CLN3-203ENST00000357806 BARGINQ6ZT62 677 aa23.31■■□□□ 1.32
CLN3-203ENST00000357806 IP6K1Q92551 441 aa23.3■■□□□ 1.32
CLN3-203ENST00000357806 FBLN1P23142 703 aa23.29■■□□□ 1.32
CLN3-203ENST00000357806 AMPHP49418 695 aa23.29■■□□□ 1.32
CLN3-203ENST00000357806 RRS1Q15050 365 aaKnown RBP23.29■■□□□ 1.32
CLN3-203ENST00000357806 KNSTRNQ9Y448 316 aa23.29■■□□□ 1.32
CLN3-203ENST00000357806 KIF24Q5T7B8 1368 aa23.28■■□□□ 1.32
CLN3-203ENST00000357806 HOXC9P31274 260 aa23.27■■□□□ 1.32
CLN3-203ENST00000357806 ZEB1P37275 1124 aaPredicted RBP23.27■■□□□ 1.32
CLN3-203ENST00000357806 KRT27Q7Z3Y8 459 aa23.27■■□□□ 1.32
CLN3-203ENST00000357806 ANKRD24Q8TF21 1146 aa23.27■■□□□ 1.32
CLN3-203ENST00000357806 CARD10Q9BWT7 1032 aa23.26■■□□□ 1.31
CLN3-203ENST00000357806 FLT4P35916 1363 aa23.26■■□□□ 1.31
CLN3-203ENST00000357806 RGPD1P0DJD0 1748 aa23.25■■□□□ 1.31
CLN3-203ENST00000357806 UPF1Q92900 1129 aaKnown RBP eCLIP23.24■■□□□ 1.31
CLN3-203ENST00000357806 SMG6Q86US8 1419 aaKnown RBP23.24■■□□□ 1.31
CLN3-203ENST00000357806 DISP2A7MBM2 1401 aa23.22■■□□□ 1.31
CLN3-203ENST00000357806 NLRP2Q9NX02 1062 aa23.22■■□□□ 1.31
CLN3-203ENST00000357806 INSRP06213 1382 aa23.21■■□□□ 1.31
CLN3-203ENST00000357806 LTV1Q96GA3 475 aaPredicted RBP23.21■■□□□ 1.31
CLN3-203ENST00000357806 CDCA7Q9BWT1 371 aaPredicted RBP23.21■■□□□ 1.31
CLN3-203ENST00000357806 SBF2Q86WG5 1849 aa23.21■■□□□ 1.31
CLN3-203ENST00000357806 AMER1Q5JTC6 1135 aaPredicted RBP23.2■■□□□ 1.3
CLN3-203ENST00000357806 EMILIN1Q9Y6C2 1016 aa23.2■■□□□ 1.3
CLN3-203ENST00000357806 TNS1Q9HBL0 1735 aaKnown RBP23.19■■□□□ 1.3
CLN3-203ENST00000357806 PER1O15534 1290 aaPredicted RBP23.19■■□□□ 1.3
CLN3-203ENST00000357806 TNNT2P45379 298 aaPredicted RBP23.18■■□□□ 1.3
CLN3-203ENST00000357806 MORC1Q86VD1 984 aa23.18■■□□□ 1.3
CLN3-203ENST00000357806 PDE3BQ13370 1112 aa23.17■■□□□ 1.3
CLN3-203ENST00000357806 PPM1GO15355 546 aaPredicted RBP23.17■■□□□ 1.3
CLN3-203ENST00000357806 TNS2Q63HR2 1409 aa23.16■■□□□ 1.3
CLN3-203ENST00000357806 DDB1Q16531 1140 aa23.16■■□□□ 1.3
CLN3-203ENST00000357806 HSP90AB2PQ58FF8 381 aa23.16■■□□□ 1.3
CLN3-203ENST00000357806 POLKQ9UBT6 870 aa23.16■■□□□ 1.3
CLN3-203ENST00000357806 NPC1L1Q9UHC9 1359 aa23.16■■□□□ 1.3
CLN3-203ENST00000357806 SHANK3Q9BYB0 1731 aa23.15■■□□□ 1.3
CLN3-203ENST00000357806 IL2RBP14784 551 aa23.13■■□□□ 1.29
CLN3-203ENST00000357806 FAM182BQ5T319 152 aa23.13■■□□□ 1.29
CLN3-203ENST00000357806 CCDC125Q86Z20 511 aa23.13■■□□□ 1.29
CLN3-203ENST00000357806 OVOS2A0A0G2JMS6 1433 aa23.13■■□□□ 1.29
CLN3-203ENST00000357806 CC2D1BQ5T0F9 858 aaKnown RBP23.11■■□□□ 1.29
CLN3-203ENST00000357806 FAM196AQ6ZSG2 479 aa23.11■■□□□ 1.29
CLN3-203ENST00000357806 PKD1L3Q7Z443 1732 aa23.09■■□□□ 1.29
CLN3-203ENST00000357806 EXOC5O00471 708 aa23.09■■□□□ 1.29
CLN3-203ENST00000357806 SF3B2Q13435 895 aaKnown RBP23.08■■□□□ 1.29
CLN3-203ENST00000357806 NBPF6Q5VWK0 638 aa23.08■■□□□ 1.29
CLN3-203ENST00000357806 NBPF4Q96M43 638 aa23.08■■□□□ 1.29
CLN3-203ENST00000357806 MEGF6O75095 1541 aa23.08■■□□□ 1.28
CLN3-203ENST00000357806 KAT6BQ8WYB5 2073 aa23.07■■□□□ 1.28
CLN3-203ENST00000357806 NCAPD2Q15021 1401 aa23.07■■□□□ 1.28
CLN3-203ENST00000357806 NHSQ6T4R5 1651 aa23.06■■□□□ 1.28
CLN3-203ENST00000357806 USHBP1Q8N6Y0 703 aa23.05■■□□□ 1.28
CLN3-203ENST00000357806 RGPD3A6NKT7 1758 aaPredicted RBP23.04■■□□□ 1.28
CLN3-203ENST00000357806 RGPD4Q7Z3J3 1758 aa23.04■■□□□ 1.28
CLN3-203ENST00000357806 BCL9O00512 1426 aa23.04■■□□□ 1.28
CLN3-203ENST00000357806 DOT1LQ8TEK3 1739 aa23.03■■□□□ 1.28
CLN3-203ENST00000357806 CNGB1Q14028 1251 aaPredicted RBP23.03■■□□□ 1.28
CLN3-203ENST00000357806 EIF4A2Q14240 407 aaKnown RBP23.03■■□□□ 1.28
CLN3-203ENST00000357806 MARCH10Q8NA82 808 aaPredicted RBP23.03■■□□□ 1.28
CLN3-203ENST00000357806 RAPGEF4Q8WZA2 1011 aa23.02■■□□□ 1.28
CLN3-203ENST00000357806 TRIM37O94972 964 aa23■■□□□ 1.27
CLN3-203ENST00000357806 RREB1Q92766 1687 aa23■■□□□ 1.27
CLN3-203ENST00000357806 TATP17735 454 aaPredicted RBP22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms