RNA–Protein interactions for RNA: ENST00000357162.6

VPS13B-202, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13B, Length 14,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-202ENST00000357162 MVPQ14764 893 aaKnown RBP7.73□□□□□ -1.17
VPS13B-202ENST00000357162 VPS36Q86VN1 386 aa7.73□□□□□ -1.17
VPS13B-202ENST00000357162 CRACR2AQ9BSW2 395 aa7.73□□□□□ -1.17
VPS13B-202ENST00000357162 COG6Q9Y2V7 657 aa7.73□□□□□ -1.17
VPS13B-202ENST00000357162 MAGEC2Q9UBF1 373 aaPredicted RBP7.73□□□□□ -1.17
VPS13B-202ENST00000357162 EID1Q9Y6B2 187 aa7.73□□□□□ -1.17
VPS13B-202ENST00000357162 GAPVD1Q14C86 1478 aa7.73□□□□□ -1.17
VPS13B-202ENST00000357162 SLC3A2P08195 630 aaKnown RBP7.73□□□□□ -1.17
VPS13B-202ENST00000357162 VPS37CA5D8V6 355 aaPredicted RBP7.73□□□□□ -1.17
VPS13B-202ENST00000357162 FGFR1OPO95684 399 aaKnown RBP7.73□□□□□ -1.17
VPS13B-202ENST00000357162 CCDC150Q8NCX0 1101 aa7.73□□□□□ -1.17
VPS13B-202ENST00000357162 DDX19AQ9NUU7 478 aaKnown RBP7.73□□□□□ -1.17
VPS13B-202ENST00000357162 EPS15P42566 896 aa7.73□□□□□ -1.17
VPS13B-202ENST00000357162 FMNL3Q8IVF7 1028 aa7.73□□□□□ -1.17
VPS13B-202ENST00000357162 MAP3K11Q16584 847 aa7.73□□□□□ -1.17
VPS13B-202ENST00000357162 CYP46A1Q9Y6A2 500 aa7.73□□□□□ -1.17
VPS13B-202ENST00000357162 LRPPRCP42704 1394 aaKnown RBP7.73□□□□□ -1.17
VPS13B-202ENST00000357162 SPATA24Q86W54 205 aa7.72□□□□□ -1.17
VPS13B-202ENST00000357162 KCNH8Q96L42 1107 aa7.72□□□□□ -1.17
VPS13B-202ENST00000357162 BMS1Q14692 1282 aaKnown RBP7.72□□□□□ -1.17
VPS13B-202ENST00000357162 ARHGAP29Q52LW3 1261 aa7.72□□□□□ -1.17
VPS13B-202ENST00000357162 CCDC148Q8NFR7 591 aa7.72□□□□□ -1.17
VPS13B-202ENST00000357162 USP25Q9UHP3 1055 aa7.72□□□□□ -1.17
VPS13B-202ENST00000357162 CEP131Q9UPN4 1083 aa7.72□□□□□ -1.17
VPS13B-202ENST00000357162 KIF21AQ7Z4S6 1674 aa7.72□□□□□ -1.17
VPS13B-202ENST00000357162 PRDM2Q13029 1718 aa7.72□□□□□ -1.17
VPS13B-202ENST00000357162 TRIM22Q8IYM9 498 aa7.72□□□□□ -1.17
VPS13B-202ENST00000357162 ARHGEF12Q9NZN5 1544 aa7.72□□□□□ -1.17
VPS13B-202ENST00000357162 SMAP1Q8IYB5 467 aaPredicted RBP7.72□□□□□ -1.17
VPS13B-202ENST00000357162 SPECC1LQ69YQ0 1117 aa7.72□□□□□ -1.17
VPS13B-202ENST00000357162 NCOA1Q15788 1441 aa7.72□□□□□ -1.17
VPS13B-202ENST00000357162 IL16Q14005 1332 aa7.72□□□□□ -1.17
VPS13B-202ENST00000357162 SETSIPP0DME0 302 aa7.72□□□□□ -1.17
VPS13B-202ENST00000357162 PTPN14Q15678 1187 aa7.71□□□□□ -1.17
VPS13B-202ENST00000357162 CC2D2AQ9P2K1 1620 aa7.71□□□□□ -1.17
VPS13B-202ENST00000357162 ANAPC15P60006 121 aa7.71□□□□□ -1.17
VPS13B-202ENST00000357162 STMN4Q9H169 189 aaPredicted RBP7.71□□□□□ -1.17
VPS13B-202ENST00000357162 MYH10P35580 1976 aa7.71□□□□□ -1.18
VPS13B-202ENST00000357162 ANKS4BQ8N8V4 417 aa7.71□□□□□ -1.18
VPS13B-202ENST00000357162 BMP15O95972 392 aa7.71□□□□□ -1.18
VPS13B-202ENST00000357162 SSR1P43307 286 aaKnown RBP7.71□□□□□ -1.18
VPS13B-202ENST00000357162 NEK4P51957 841 aa7.71□□□□□ -1.18
VPS13B-202ENST00000357162 NAA15Q9BXJ9 866 aaKnown RBP7.71□□□□□ -1.18
VPS13B-202ENST00000357162 NUP62CLQ9H1M0 184 aa7.71□□□□□ -1.18
VPS13B-202ENST00000357162 ZMYM4Q5VZL5 1548 aa7.71□□□□□ -1.18
VPS13B-202ENST00000357162 APAF1O14727 1248 aa7.71□□□□□ -1.18
VPS13B-202ENST00000357162 SNX21Q969T3 373 aa7.71□□□□□ -1.18
VPS13B-202ENST00000357162 MARCH6O60337 910 aa7.7□□□□□ -1.18
VPS13B-202ENST00000357162 UBTFL1P0CB47 393 aaPredicted RBP7.7□□□□□ -1.18
VPS13B-202ENST00000357162 GABPB1Q06547 395 aaPredicted RBP7.7□□□□□ -1.18
VPS13B-202ENST00000357162 RBM28Q9NW13 759 aaKnown RBP7.7□□□□□ -1.18
VPS13B-202ENST00000357162 ANO10Q9NW15 660 aa7.7□□□□□ -1.18
VPS13B-202ENST00000357162 ZNF397Q8NF99 534 aaPredicted RBP7.7□□□□□ -1.18
VPS13B-202ENST00000357162 CCDC50Q8IVM0 306 aa7.7□□□□□ -1.18
VPS13B-202ENST00000357162 WDR97A6NE52 1622 aa7.7□□□□□ -1.18
VPS13B-202ENST00000357162 DESP17661 470 aa7.7□□□□□ -1.18
VPS13B-202ENST00000357162 HOXA7P31268 230 aaPredicted RBP7.7□□□□□ -1.18
VPS13B-202ENST00000357162 ATL3Q6DD88 541 aa7.7□□□□□ -1.18
VPS13B-202ENST00000357162 HMG20BQ9P0W2 317 aa7.7□□□□□ -1.18
VPS13B-202ENST00000357162 ITSN2Q9NZM3 1697 aa7.7□□□□□ -1.18
VPS13B-202ENST00000357162 KIF5CO60282 957 aa7.7□□□□□ -1.18
VPS13B-202ENST00000357162 ATF7IPQ6VMQ6 1270 aa7.7□□□□□ -1.18
VPS13B-202ENST00000357162 RPAP2Q8IXW5 612 aaPredicted RBP7.7□□□□□ -1.18
VPS13B-202ENST00000357162 CCDC146Q8IYE0 955 aa7.7□□□□□ -1.18
VPS13B-202ENST00000357162 RILPL2Q969X0 211 aa7.7□□□□□ -1.18
VPS13B-202ENST00000357162 NUP160Q12769 1436 aa7.7□□□□□ -1.18
VPS13B-202ENST00000357162 TPRNQ4KMQ1 711 aa7.7□□□□□ -1.18
VPS13B-202ENST00000357162 CT47A1Q5JQC4 288 aaPredicted RBP7.7□□□□□ -1.18
VPS13B-202ENST00000357162 HOOK3Q86VS8 718 aa7.7□□□□□ -1.18
VPS13B-202ENST00000357162 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.7□□□□□ -1.184e-7■■■■■ 34.5
VPS13B-202ENST00000357162 NCBP3Q53F19 620 aaKnown RBP7.69□□□□□ -1.18
VPS13B-202ENST00000357162 CCDC94Q9BW85 323 aaPredicted RBP7.69□□□□□ -1.18
VPS13B-202ENST00000357162 CCDC30Q5VVM6 783 aa7.69□□□□□ -1.18
VPS13B-202ENST00000357162 TAOK3Q9H2K8 898 aa7.69□□□□□ -1.18
VPS13B-202ENST00000357162 RAB11FIP3O75154 756 aa7.69□□□□□ -1.18
VPS13B-202ENST00000357162 FCHSD2O94868 740 aa7.69□□□□□ -1.18
VPS13B-202ENST00000357162 RIPK4P57078 832 aa7.69□□□□□ -1.18
VPS13B-202ENST00000357162 CTCFLQ8NI51 663 aaPredicted RBP7.69□□□□□ -1.18
VPS13B-202ENST00000357162 ALS2CR12Q96Q35 445 aa7.69□□□□□ -1.18
VPS13B-202ENST00000357162 C9orf84Q5VXU9 1444 aa7.69□□□□□ -1.18
VPS13B-202ENST00000357162 CCDC196A0A1B0GTZ2 297 aa7.69□□□□□ -1.18
VPS13B-202ENST00000357162 AMPHP49418 695 aa7.69□□□□□ -1.18
VPS13B-202ENST00000357162 ARID3AQ99856 593 aa7.69□□□□□ -1.18
VPS13B-202ENST00000357162 GNAI2P04899 355 aa7.69□□□□□ -1.18
VPS13B-202ENST00000357162 SMC1AQ14683 1233 aaKnown RBP7.69□□□□□ -1.18
VPS13B-202ENST00000357162 USH1CQ9Y6N9 552 aa7.69□□□□□ -1.18
VPS13B-202ENST00000357162 EPB41L2O43491 1005 aaKnown RBP7.69□□□□□ -1.18
VPS13B-202ENST00000357162 PPP1R12BO60237 982 aaPredicted RBP7.69□□□□□ -1.18
VPS13B-202ENST00000357162 CLSTN1O94985 981 aa7.69□□□□□ -1.18
VPS13B-202ENST00000357162 UPF3BQ9BZI7 483 aaKnown RBP7.69□□□□□ -1.18
VPS13B-202ENST00000357162 U3KPZ7 1027 aaPredicted RBP7.69□□□□□ -1.18
VPS13B-202ENST00000357162 C1orf141Q5JVX7 400 aa7.69□□□□□ -1.18
VPS13B-202ENST00000357162 KANK3Q6NY19 840 aa7.69□□□□□ -1.18
VPS13B-202ENST00000357162 CETN2P41208 172 aa7.69□□□□□ -1.18
VPS13B-202ENST00000357162 TBC1D2BQ9UPU7 963 aa7.69□□□□□ -1.18
VPS13B-202ENST00000357162 STK38Q15208 465 aa7.68□□□□□ -1.18
VPS13B-202ENST00000357162 STX1AQ16623 288 aa7.68□□□□□ -1.18
VPS13B-202ENST00000357162 CCDC91Q7Z6B0 441 aa7.68□□□□□ -1.18
VPS13B-202ENST00000357162 UBE2HP62256 183 aa7.68□□□□□ -1.18
VPS13B-202ENST00000357162 TBC1D32Q96NH3 1257 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms