RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 CEP57L1Q8IYX8 460 aa17.58■□□□□ 0.4
CHD4-201ENST00000357008 SLC12A5Q9H2X9 1139 aa17.58■□□□□ 0.4
CHD4-201ENST00000357008 CDK5RAP3Q96JB5 506 aa17.57■□□□□ 0.4
CHD4-201ENST00000357008 ARAP1Q96P48 1450 aa17.57■□□□□ 0.4
CHD4-201ENST00000357008 BLOC1S2Q6QNY1 142 aa17.57■□□□□ 0.4
CHD4-201ENST00000357008 LUC7LQ9NQ29 371 aaKnown RBP17.57■□□□□ 0.4
CHD4-201ENST00000357008 PPP6R1Q9UPN7 881 aa17.57■□□□□ 0.4
CHD4-201ENST00000357008 CCDC158Q5M9N0 1113 aa17.57■□□□□ 0.4
CHD4-201ENST00000357008 PDCL2Q8N4E4 241 aa17.57■□□□□ 0.4
CHD4-201ENST00000357008 RPAP2Q8IXW5 612 aaPredicted RBP17.56■□□□□ 0.4
CHD4-201ENST00000357008 SLFN5Q08AF3 891 aa17.56■□□□□ 0.4
CHD4-201ENST00000357008 TRIM22Q8IYM9 498 aa17.56■□□□□ 0.4
CHD4-201ENST00000357008 ERICH3Q5RHP9 1530 aa17.56■□□□□ 0.4
CHD4-201ENST00000357008 GOLGA6L10A6NI86 522 aa17.56■□□□□ 0.4
CHD4-201ENST00000357008 ERLIN2O94905 339 aa17.56■□□□□ 0.4
CHD4-201ENST00000357008 SLC3A2P08195 630 aaKnown RBP17.56■□□□□ 0.4
CHD4-201ENST00000357008 PDRG1Q9NUG6 133 aa17.56■□□□□ 0.4
CHD4-201ENST00000357008 NUTM2GQ5VZR2 741 aa17.56■□□□□ 0.4
CHD4-201ENST00000357008 CCAR1Q8IX12 1150 aaKnown RBP17.56■□□□□ 0.4
CHD4-201ENST00000357008 KIAA0754O94854 1291 aa17.55■□□□□ 0.4
CHD4-201ENST00000357008 MSH5O43196 834 aa17.55■□□□□ 0.4
CHD4-201ENST00000357008 TXLNBQ8N3L3 684 aa17.55■□□□□ 0.4
CHD4-201ENST00000357008 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.55■□□□□ 0.46e-7■■□□□ 14.3
CHD4-201ENST00000357008 CFTRP13569 1480 aa17.55■□□□□ 0.4
CHD4-201ENST00000357008 RAD54L2Q9Y4B4 1467 aa17.55■□□□□ 0.4
CHD4-201ENST00000357008 ERBINQ96RT1 1412 aa17.55■□□□□ 0.4
CHD4-201ENST00000357008 STIM1Q13586 685 aa17.55■□□□□ 0.4
CHD4-201ENST00000357008 SKIDA1Q1XH10 827 aa17.55■□□□□ 0.4
CHD4-201ENST00000357008 SULT6B1Q6IMI4 303 aa17.54■□□□□ 0.4
CHD4-201ENST00000357008 MTMR7Q9Y216 660 aa17.54■□□□□ 0.4
CHD4-201ENST00000357008 TTC39AQ5SRH9 613 aa17.54■□□□□ 0.4
CHD4-201ENST00000357008 UPF3BQ9BZI7 483 aaKnown RBP17.53■□□□□ 0.4
CHD4-201ENST00000357008 CCDC181Q5TID7 509 aa17.53■□□□□ 0.4
CHD4-201ENST00000357008 SYCE3A1L190 88 aa17.53■□□□□ 0.4
CHD4-201ENST00000357008 FILIP1Q7Z7B0 1213 aa17.53■□□□□ 0.4
CHD4-201ENST00000357008 KRT32Q14532 448 aa17.53■□□□□ 0.4
CHD4-201ENST00000357008 JAKMIP1Q96N16 626 aaKnown RBP17.53■□□□□ 0.4
CHD4-201ENST00000357008 PRDM2Q13029 1718 aa17.53■□□□□ 0.4
CHD4-201ENST00000357008 MAP3K11Q16584 847 aa17.53■□□□□ 0.4
CHD4-201ENST00000357008 FAM177A1Q8N128 213 aaPredicted RBP17.52■□□□□ 0.4
CHD4-201ENST00000357008 PRAM1Q96QH2 718 aa17.52■□□□□ 0.4
CHD4-201ENST00000357008 SMTNL1A8MU46 457 aa17.52■□□□□ 0.4
CHD4-201ENST00000357008 DEF6Q9H4E7 631 aa17.52■□□□□ 0.4
CHD4-201ENST00000357008 KIF2AO00139 706 aaPredicted RBP17.52■□□□□ 0.39
CHD4-201ENST00000357008 MAP4K4O95819 1239 aaPredicted RBP17.51■□□□□ 0.39
CHD4-201ENST00000357008 ABTB2Q8N961 1025 aa17.51■□□□□ 0.39
CHD4-201ENST00000357008 CDKL5O76039 1030 aa17.51■□□□□ 0.39
CHD4-201ENST00000357008 SYCP1Q15431 976 aa17.51■□□□□ 0.39
CHD4-201ENST00000357008 NACAP1Q9BZK3 213 aa17.51■□□□□ 0.39
CHD4-201ENST00000357008 IQCEQ6IPM2 695 aa17.5■□□□□ 0.39
CHD4-201ENST00000357008 UBXN4Q92575 508 aa17.5■□□□□ 0.39
CHD4-201ENST00000357008 WDR97A6NE52 1622 aa17.5■□□□□ 0.39
CHD4-201ENST00000357008 KRT18P05783 430 aaKnown RBP17.5■□□□□ 0.39
CHD4-201ENST00000357008 TAF3Q5VWG9 929 aa17.5■□□□□ 0.39
CHD4-201ENST00000357008 ZNF692Q9BU19 519 aaPredicted RBP17.5■□□□□ 0.39
CHD4-201ENST00000357008 KIF6Q6ZMV9 814 aa17.5■□□□□ 0.39
CHD4-201ENST00000357008 ARHGAP5Q13017 1502 aa17.5■□□□□ 0.39
CHD4-201ENST00000357008 TMEM57Q8N5G2 664 aa17.49■□□□□ 0.39
CHD4-201ENST00000357008 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.49■□□□□ 0.399e-7■■■■■ 60.1
CHD4-201ENST00000357008 SRGAP3O43295 1099 aa17.49■□□□□ 0.39
CHD4-201ENST00000357008 GPRASP1Q5JY77 1395 aa17.49■□□□□ 0.39
CHD4-201ENST00000357008 GOLGA6L7A0A1B0GV03 622 aa17.49■□□□□ 0.39
CHD4-201ENST00000357008 FCHSD2O94868 740 aa17.49■□□□□ 0.39
CHD4-201ENST00000357008 USP8P40818 1118 aa17.49■□□□□ 0.39
CHD4-201ENST00000357008 SAMD1Q6SPF0 538 aaPredicted RBP17.49■□□□□ 0.39
CHD4-201ENST00000357008 CWC27Q6UX04 472 aaKnown RBP17.49■□□□□ 0.39
CHD4-201ENST00000357008 AACSQ86V21 672 aa17.49■□□□□ 0.39
CHD4-201ENST00000357008 SIL1Q9H173 461 aa17.49■□□□□ 0.39
CHD4-201ENST00000357008 CCDC69A6NI79 296 aa17.49■□□□□ 0.39
CHD4-201ENST00000357008 FBXO3Q9UK99 471 aa17.49■□□□□ 0.39
CHD4-201ENST00000357008 NOL7Q9UMY1 257 aaKnown RBP17.49■□□□□ 0.39
CHD4-201ENST00000357008 CNNM1Q9NRU3 951 aa17.48■□□□□ 0.39
CHD4-201ENST00000357008 CTNNA3Q9UI47 895 aa17.48■□□□□ 0.39
CHD4-201ENST00000357008 AFAP1Q8N556 730 aa17.48■□□□□ 0.39
CHD4-201ENST00000357008 IKQ13123 557 aaPredicted RBP17.48■□□□□ 0.39
CHD4-201ENST00000357008 ZSCAN25Q6NSZ9 544 aa17.48■□□□□ 0.39
CHD4-201ENST00000357008 ATF3P18847 181 aa17.47■□□□□ 0.39
CHD4-201ENST00000357008 CABP1Q9NZU7 370 aa17.47■□□□□ 0.39
CHD4-201ENST00000357008 C9orf84Q5VXU9 1444 aa17.47■□□□□ 0.39
CHD4-201ENST00000357008 GNL3LQ9NVN8 582 aaKnown RBP17.47■□□□□ 0.39
CHD4-201ENST00000357008 CDK19Q9BWU1 502 aa17.47■□□□□ 0.39
CHD4-201ENST00000357008 EHBP1L1Q8N3D4 1523 aa17.47■□□□□ 0.39
CHD4-201ENST00000357008 HSP90AB3PQ58FF7 597 aa17.46■□□□□ 0.39
CHD4-201ENST00000357008 CCDC183Q5T5S1 534 aa17.46■□□□□ 0.39
CHD4-201ENST00000357008 TMCO3Q6UWJ1 677 aa17.46■□□□□ 0.39
CHD4-201ENST00000357008 ANKRD30BQ9BXX2 1392 aa17.46■□□□□ 0.39
CHD4-201ENST00000357008 PTPN14Q15678 1187 aa17.46■□□□□ 0.39
CHD4-201ENST00000357008 IL1RAPL2Q9NP60 686 aa17.46■□□□□ 0.39
CHD4-201ENST00000357008 TMPOP42166 694 aaKnown RBP17.45■□□□□ 0.38
CHD4-201ENST00000357008 CCDC102AQ96A19 550 aa17.45■□□□□ 0.38
CHD4-201ENST00000357008 CASTP20810 708 aaKnown RBP17.45■□□□□ 0.38
CHD4-201ENST00000357008 GBP3Q9H0R5 595 aa17.45■□□□□ 0.38
CHD4-201ENST00000357008 EPB41L2O43491 1005 aaKnown RBP17.44■□□□□ 0.38
CHD4-201ENST00000357008 NEFHP12036 1026 aa17.44■□□□□ 0.38
CHD4-201ENST00000357008 SFPQP23246 707 aaKnown RBP eCLIP17.44■□□□□ 0.38
CHD4-201ENST00000357008 NFE2L2Q16236 605 aa17.44■□□□□ 0.38
CHD4-201ENST00000357008 ARHGAP29Q52LW3 1261 aa17.44■□□□□ 0.38
CHD4-201ENST00000357008 TANGO6Q9C0B7 1094 aa17.44■□□□□ 0.38
CHD4-201ENST00000357008 PLEKHH2Q8IVE3 1493 aa17.44■□□□□ 0.38
CHD4-201ENST00000357008 CFAP100Q494V2 611 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms