RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 TOM1L2Q6ZVM7 507 aa16.36■□□□□ 0.21
RTN3-204ENST00000354497 PTF1AQ7RTS3 328 aa16.36■□□□□ 0.21
RTN3-204ENST00000354497 STK32BQ9NY57 414 aa16.36■□□□□ 0.21
RTN3-204ENST00000354497 LRRC37A3O60309 1634 aa16.36■□□□□ 0.21
RTN3-204ENST00000354497 PEAK1Q9H792 1746 aa16.35■□□□□ 0.21
RTN3-204ENST00000354497 RGPD3A6NKT7 1758 aaPredicted RBP16.35■□□□□ 0.21
RTN3-204ENST00000354497 RGPD4Q7Z3J3 1758 aa16.35■□□□□ 0.21
RTN3-204ENST00000354497 PLEKHG3A1L390 1219 aa16.35■□□□□ 0.21
RTN3-204ENST00000354497 PTGER2P43116 358 aa16.34■□□□□ 0.21
RTN3-204ENST00000354497 SRPK2P78362 688 aaKnown RBP16.34■□□□□ 0.21
RTN3-204ENST00000354497 FHDC1Q9C0D6 1143 aaPredicted RBP16.34■□□□□ 0.21
RTN3-204ENST00000354497 PPIP5K1Q6PFW1 1433 aa16.32■□□□□ 0.2
RTN3-204ENST00000354497 SYT17Q9BSW7 474 aa16.32■□□□□ 0.2
RTN3-204ENST00000354497 NLRP6P59044 892 aa16.31■□□□□ 0.2
RTN3-204ENST00000354497 C1QTNF8P60827 252 aa16.31■□□□□ 0.2
RTN3-204ENST00000354497 PROM2Q8N271 834 aa16.31■□□□□ 0.2
RTN3-204ENST00000354497 MARCH10Q8NA82 808 aaPredicted RBP16.31■□□□□ 0.2
RTN3-204ENST00000354497 SBF2Q86WG5 1849 aa16.31■□□□□ 0.2
RTN3-204ENST00000354497 SLC15A2Q16348 729 aa16.3■□□□□ 0.2
RTN3-204ENST00000354497 TXNRD1Q16881 649 aa16.3■□□□□ 0.2
RTN3-204ENST00000354497 RAB3GAP2Q9H2M9 1393 aa16.29■□□□□ 0.2
RTN3-204ENST00000354497 CSB-PGBD3P0DP91 1061 aa16.29■□□□□ 0.2
RTN3-204ENST00000354497 MTFR1LQ9H019 292 aa16.29■□□□□ 0.2
RTN3-204ENST00000354497 CABP2Q9NPB3 220 aa16.29■□□□□ 0.2
RTN3-204ENST00000354497 AATKQ6ZMQ8 1374 aa16.29■□□□□ 0.2
RTN3-204ENST00000354497 STAC3Q96MF2 364 aa16.28■□□□□ 0.2
RTN3-204ENST00000354497 SOX12O15370 315 aa16.28■□□□□ 0.2
RTN3-204ENST00000354497 AKAP12Q02952 1782 aa16.27■□□□□ 0.19
RTN3-204ENST00000354497 KLHL34Q8N239 644 aa16.27■□□□□ 0.19
RTN3-204ENST00000354497 CDCA7Q9BWT1 371 aaPredicted RBP16.27■□□□□ 0.19
RTN3-204ENST00000354497 WDR17Q8IZU2 1322 aa16.26■□□□□ 0.19
RTN3-204ENST00000354497 WNK3Q9BYP7 1800 aa16.26■□□□□ 0.19
RTN3-204ENST00000354497 ARXQ96QS3 562 aa16.26■□□□□ 0.19
RTN3-204ENST00000354497 GPR162Q16538 588 aa16.25■□□□□ 0.19
RTN3-204ENST00000354497 AXIN2Q9Y2T1 843 aa16.25■□□□□ 0.19
RTN3-204ENST00000354497 U3KPZ7 1027 aaPredicted RBP16.25■□□□□ 0.19
RTN3-204ENST00000354497 SLIT3O75094 1523 aa16.25■□□□□ 0.19
RTN3-204ENST00000354497 EXOC5O00471 708 aa16.24■□□□□ 0.19
RTN3-204ENST00000354497 ACSBG1Q96GR2 724 aa16.24■□□□□ 0.19
RTN3-204ENST00000354497 CABP1Q9NZU7 370 aa16.24■□□□□ 0.19
RTN3-204ENST00000354497 USP6P35125 1406 aa16.24■□□□□ 0.19
RTN3-204ENST00000354497 GIGYF1O75420 1035 aaPredicted RBP16.23■□□□□ 0.19
RTN3-204ENST00000354497 BRD4O60885 1362 aaPredicted RBP16.23■□□□□ 0.19
RTN3-204ENST00000354497 CPSF1Q10570 1443 aaKnown RBP16.23■□□□□ 0.19
RTN3-204ENST00000354497 IFFO2Q5TF58 517 aa16.22■□□□□ 0.19
RTN3-204ENST00000354497 CENPJQ9HC77 1338 aaPredicted RBP16.22■□□□□ 0.19
RTN3-204ENST00000354497 BCL9O00512 1426 aa16.22■□□□□ 0.19
RTN3-204ENST00000354497 SGIP1Q9BQI5 828 aa16.21■□□□□ 0.19
RTN3-204ENST00000354497 CARD10Q9BWT7 1032 aa16.21■□□□□ 0.19
RTN3-204ENST00000354497 NBPF1Q3BBV0 1214 aa16.2■□□□□ 0.18
RTN3-204ENST00000354497 CHD4Q14839 1912 aa16.2■□□□□ 0.18
RTN3-204ENST00000354497 COL18A1P39060 1754 aa16.2■□□□□ 0.18
RTN3-204ENST00000354497 PIK3C2AO00443 1686 aa16.2■□□□□ 0.18
RTN3-204ENST00000354497 C1QBPQ07021 282 aaKnown RBP16.19■□□□□ 0.18
RTN3-204ENST00000354497 UTRNP46939 3433 aa16.18■□□□□ 0.18
RTN3-204ENST00000354497 TNS2Q63HR2 1409 aa16.18■□□□□ 0.18
RTN3-204ENST00000354497 ARHGEF25Q86VW2 580 aa16.18■□□□□ 0.18
RTN3-204ENST00000354497 KCNH5Q8NCM2 988 aa16.18■□□□□ 0.18
RTN3-204ENST00000354497 QRICH2Q9H0J4 1663 aa16.18■□□□□ 0.18
RTN3-204ENST00000354497 CCDC7Q96M83 1385 aa16.17■□□□□ 0.18
RTN3-204ENST00000354497 KIAA1210Q9ULL0 1709 aa16.17■□□□□ 0.18
RTN3-204ENST00000354497 NHSQ6T4R5 1651 aa16.17■□□□□ 0.18
RTN3-204ENST00000354497 ZNF827Q17R98 1081 aa16.17■□□□□ 0.18
RTN3-204ENST00000354497 FOXD4L1Q9NU39 408 aa16.17■□□□□ 0.18
RTN3-204ENST00000354497 MAP3K5Q99683 1374 aa16.16■□□□□ 0.18
RTN3-204ENST00000354497 RGPD5Q99666 1765 aa16.16■□□□□ 0.18
RTN3-204ENST00000354497 POLD1P28340 1107 aa16.15■□□□□ 0.18
RTN3-204ENST00000354497 TTC21BQ7Z4L5 1316 aa16.14■□□□□ 0.17
RTN3-204ENST00000354497 NLRP2Q9NX02 1062 aa16.14■□□□□ 0.17
RTN3-204ENST00000354497 PAPPAQ13219 1627 aa16.14■□□□□ 0.17
RTN3-204ENST00000354497 ZBTB22O15209 634 aa16.13■□□□□ 0.17
RTN3-204ENST00000354497 TRPM1Q7Z4N2 1603 aa16.13■□□□□ 0.17
RTN3-204ENST00000354497 EVC2Q86UK5 1308 aa16.12■□□□□ 0.17
RTN3-204ENST00000354497 CACNB1Q02641 598 aaPredicted RBP16.11■□□□□ 0.17
RTN3-204ENST00000354497 ABCC6O95255 1503 aa16.11■□□□□ 0.17
RTN3-204ENST00000354497 LRRC4BQ9NT99 713 aa16.11■□□□□ 0.17
RTN3-204ENST00000354497 IL2RBP14784 551 aa16.1■□□□□ 0.17
RTN3-204ENST00000354497 NLGN2Q8NFZ4 835 aa16.1■□□□□ 0.17
RTN3-204ENST00000354497 ZNF692Q9BU19 519 aaPredicted RBP16.1■□□□□ 0.17
RTN3-204ENST00000354497 BTAF1O14981 1849 aa16.1■□□□□ 0.17
RTN3-204ENST00000354497 TTC21AQ8NDW8 1320 aa16.09■□□□□ 0.17
RTN3-204ENST00000354497 NFAT5O94916 1531 aa16.09■□□□□ 0.17
RTN3-204ENST00000354497 TFCP2L1Q9NZI6 479 aa16.09■□□□□ 0.17
RTN3-204ENST00000354497 SLC16A10Q8TF71 515 aa16.08■□□□□ 0.16
RTN3-204ENST00000354497 AKT1S1Q96B36 256 aa16.08■□□□□ 0.16
RTN3-204ENST00000354497 SHANK3Q9BYB0 1731 aa16.08■□□□□ 0.16
RTN3-204ENST00000354497 KTN1Q86UP2 1357 aaKnown RBP16.07■□□□□ 0.16
RTN3-204ENST00000354497 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.07■□□□□ 0.16
RTN3-204ENST00000354497 PNPLA7Q6ZV29 1317 aa16.07■□□□□ 0.16
RTN3-204ENST00000354497 KCNQ4P56696 695 aa16.06■□□□□ 0.16
RTN3-204ENST00000354497 DDX54Q8TDD1 881 aaKnown RBP16.06■□□□□ 0.16
RTN3-204ENST00000354497 ANKRD24Q8TF21 1146 aa16.06■□□□□ 0.16
RTN3-204ENST00000354497 SYTL4Q96C24 671 aaPredicted RBP16.06■□□□□ 0.16
RTN3-204ENST00000354497 ERBB3P21860 1342 aa16.06■□□□□ 0.16
RTN3-204ENST00000354497 SLC27A3Q5K4L6 730 aa16.05■□□□□ 0.16
RTN3-204ENST00000354497 GRIN3BO60391 1043 aa16.04■□□□□ 0.16
RTN3-204ENST00000354497 MYCNP04198 464 aaPredicted RBP16.03■□□□□ 0.16
RTN3-204ENST00000354497 YBX3P16989 372 aaKnown RBP eCLIP16.03■□□□□ 0.162e-9■□□□□ 10.1
RTN3-204ENST00000354497 ATP10DQ9P241 1426 aa16.03■□□□□ 0.16
RTN3-204ENST00000354497 NME9Q86XW9 330 aa16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms