RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 SRCIN1Q9C0H9 1055 aa14.81□□□□□ -0.04
COL6A3-203ENST00000353578 CCDC150Q8NCX0 1101 aa14.81□□□□□ -0.04
COL6A3-203ENST00000353578 NUP62CLQ9H1M0 184 aa14.81□□□□□ -0.04
COL6A3-203ENST00000353578 ERICH2A1L162 156 aa14.8□□□□□ -0.04
COL6A3-203ENST00000353578 B4GALNT4Q76KP1 1039 aa14.8□□□□□ -0.04
COL6A3-203ENST00000353578 CNTROBQ8N137 903 aa14.8□□□□□ -0.04
COL6A3-203ENST00000353578 SCAND2PQ9GZW5 306 aaPredicted RBP14.8□□□□□ -0.04
COL6A3-203ENST00000353578 CASQ1P31415 396 aa14.8□□□□□ -0.04
COL6A3-203ENST00000353578 ZNF397Q8NF99 534 aaPredicted RBP14.8□□□□□ -0.04
COL6A3-203ENST00000353578 IPO4Q8TEX9 1081 aaKnown RBP14.8□□□□□ -0.04
COL6A3-203ENST00000353578 ZNF428Q96B54 188 aa14.8□□□□□ -0.04
COL6A3-203ENST00000353578 ZNF622Q969S3 477 aaKnown RBP eCLIP14.8□□□□□ -0.04
COL6A3-203ENST00000353578 TAOK3Q9H2K8 898 aa14.8□□□□□ -0.04
COL6A3-203ENST00000353578 CEP63Q96MT8 703 aa14.79□□□□□ -0.04
COL6A3-203ENST00000353578 PPP6R1Q9UPN7 881 aa14.79□□□□□ -0.04
COL6A3-203ENST00000353578 SEPT14Q6ZU15 432 aa14.79□□□□□ -0.04
COL6A3-203ENST00000353578 EBAG9O00559 213 aa14.79□□□□□ -0.04
COL6A3-203ENST00000353578 GTF2F1P35269 517 aaKnown RBP eCLIP14.78□□□□□ -0.04
COL6A3-203ENST00000353578 CTCFLQ8NI51 663 aaPredicted RBP14.78□□□□□ -0.04
COL6A3-203ENST00000353578 FAM184BQ9ULE4 1060 aa14.78□□□□□ -0.04
COL6A3-203ENST00000353578 ZBTB17Q13105 803 aa14.78□□□□□ -0.04
COL6A3-203ENST00000353578 ZFYP08048 801 aaPredicted RBP14.78□□□□□ -0.04
COL6A3-203ENST00000353578 TTC14Q96N46 770 aa14.78□□□□□ -0.04
COL6A3-203ENST00000353578 MKRN1Q9UHC7 482 aaKnown RBP14.78□□□□□ -0.04
COL6A3-203ENST00000353578 MSL1Q68DK7 614 aa14.78□□□□□ -0.04
COL6A3-203ENST00000353578 UPF3BQ9BZI7 483 aaKnown RBP14.78□□□□□ -0.04
COL6A3-203ENST00000353578 CDKL5O76039 1030 aa14.77□□□□□ -0.04
COL6A3-203ENST00000353578 SART3Q15020 963 aaKnown RBP14.77□□□□□ -0.04
COL6A3-203ENST00000353578 RALYLQ86SE5 291 aaKnown RBP14.77□□□□□ -0.04
COL6A3-203ENST00000353578 SPC24Q8NBT2 197 aa14.77□□□□□ -0.05
COL6A3-203ENST00000353578 IFIT2P09913 472 aaKnown RBP14.77□□□□□ -0.05
COL6A3-203ENST00000353578 CEP83Q9Y592 693 aa14.77□□□□□ -0.05
COL6A3-203ENST00000353578 PABPN1Q86U42 306 aaKnown RBP eCLIP14.77□□□□□ -0.05
COL6A3-203ENST00000353578 TCEAL9Q9UHQ7 104 aa14.77□□□□□ -0.05
COL6A3-203ENST00000353578 SMARCA2P51531 1590 aa14.76□□□□□ -0.05
COL6A3-203ENST00000353578 COG6Q9Y2V7 657 aa14.76□□□□□ -0.05
COL6A3-203ENST00000353578 PAK3O75914 559 aaPredicted RBP14.76□□□□□ -0.05
COL6A3-203ENST00000353578 SYCP1Q15431 976 aa14.76□□□□□ -0.05
COL6A3-203ENST00000353578 KIF5BP33176 963 aa14.76□□□□□ -0.05
COL6A3-203ENST00000353578 KLHL40Q2TBA0 621 aa14.76□□□□□ -0.05
COL6A3-203ENST00000353578 TCHPQ9BT92 498 aa14.76□□□□□ -0.05
COL6A3-203ENST00000353578 NUP155O75694 1391 aa14.76□□□□□ -0.05
COL6A3-203ENST00000353578 PKD2Q13563 968 aa14.76□□□□□ -0.05
COL6A3-203ENST00000353578 TICAM2Q86XR7 235 aa14.76□□□□□ -0.05
COL6A3-203ENST00000353578 CKAP4Q07065 602 aaKnown RBP14.75□□□□□ -0.05
COL6A3-203ENST00000353578 RRBP1Q9P2E9 1410 aaKnown RBP14.75□□□□□ -0.05
COL6A3-203ENST00000353578 RUNDC1Q96C34 613 aa14.75□□□□□ -0.05
COL6A3-203ENST00000353578 OPA1O60313 960 aa14.75□□□□□ -0.05
COL6A3-203ENST00000353578 TAF4BQ92750 862 aa14.75□□□□□ -0.05
COL6A3-203ENST00000353578 LMAN1P49257 510 aa14.75□□□□□ -0.05
COL6A3-203ENST00000353578 AIMP1Q12904 312 aaKnown RBP14.75□□□□□ -0.05
COL6A3-203ENST00000353578 SPATS2Q86XZ4 545 aaKnown RBP14.75□□□□□ -0.05
COL6A3-203ENST00000353578 ANO10Q9NW15 660 aa14.74□□□□□ -0.05
COL6A3-203ENST00000353578 TOP2AP11388 1531 aaKnown RBP14.74□□□□□ -0.05
COL6A3-203ENST00000353578 VPS36Q86VN1 386 aa14.74□□□□□ -0.05
COL6A3-203ENST00000353578 ALS2CR12Q96Q35 445 aa14.74□□□□□ -0.05
COL6A3-203ENST00000353578 TNNT1P13805 278 aa14.73□□□□□ -0.05
COL6A3-203ENST00000353578 ARHGAP25P42331 645 aa14.73□□□□□ -0.05
COL6A3-203ENST00000353578 TRIM34Q9BYJ4 488 aa14.73□□□□□ -0.05
COL6A3-203ENST00000353578 PRDM10Q9NQV6 1147 aa14.73□□□□□ -0.05
COL6A3-203ENST00000353578 STK38Q15208 465 aa14.73□□□□□ -0.05
COL6A3-203ENST00000353578 CETN2P41208 172 aa14.73□□□□□ -0.05
COL6A3-203ENST00000353578 GNAI1P63096 354 aa14.73□□□□□ -0.05
COL6A3-203ENST00000353578 LRRFIP2Q9Y608 721 aaKnown RBP14.73□□□□□ -0.05
COL6A3-203ENST00000353578 TUBB2AQ13885 445 aa14.73□□□□□ -0.05
COL6A3-203ENST00000353578 TUBB2BQ9BVA1 445 aa14.73□□□□□ -0.05
COL6A3-203ENST00000353578 KRT32Q14532 448 aa14.72□□□□□ -0.05
COL6A3-203ENST00000353578 DESP17661 470 aa14.72□□□□□ -0.05
COL6A3-203ENST00000353578 FIBPO43427 364 aa14.72□□□□□ -0.05
COL6A3-203ENST00000353578 CCAR1Q8IX12 1150 aaKnown RBP14.72□□□□□ -0.05
COL6A3-203ENST00000353578 L3MBTL2Q969R5 705 aa14.71□□□□□ -0.05
COL6A3-203ENST00000353578 SH2B1Q9NRF2 756 aaPredicted RBP14.71□□□□□ -0.05
COL6A3-203ENST00000353578 NEK4P51957 841 aa14.71□□□□□ -0.05
COL6A3-203ENST00000353578 TAX1BP1Q86VP1 789 aa14.71□□□□□ -0.05
COL6A3-203ENST00000353578 RNF187Q5TA31 235 aaPredicted RBP14.71□□□□□ -0.05
COL6A3-203ENST00000353578 PIP4K2BP78356 416 aa14.71□□□□□ -0.06
COL6A3-203ENST00000353578 FOXD4L6Q3SYB3 417 aaPredicted RBP14.71□□□□□ -0.06
COL6A3-203ENST00000353578 FOXD4L3Q6VB84 417 aaPredicted RBP14.71□□□□□ -0.06
COL6A3-203ENST00000353578 HOOK3Q86VS8 718 aa14.71□□□□□ -0.06
COL6A3-203ENST00000353578 ARFGAP2Q8N6H7 521 aa14.71□□□□□ -0.06
COL6A3-203ENST00000353578 IFT74Q96LB3 600 aa14.71□□□□□ -0.06
COL6A3-203ENST00000353578 SPATA32Q96LK8 384 aa14.71□□□□□ -0.06
COL6A3-203ENST00000353578 DDX19AQ9NUU7 478 aaKnown RBP14.71□□□□□ -0.06
COL6A3-203ENST00000353578 TACO1Q9BSH4 297 aaKnown RBP14.71□□□□□ -0.06
COL6A3-203ENST00000353578 LUC7L2Q9Y383 392 aaKnown RBP14.71□□□□□ -0.06
COL6A3-203ENST00000353578 CARMIL1Q5VZK9 1371 aa14.71□□□□□ -0.06
COL6A3-203ENST00000353578 CHMP7Q8WUX9 453 aaPredicted RBP14.7□□□□□ -0.06
COL6A3-203ENST00000353578 BCCIPQ9P287 314 aaKnown RBP eCLIP14.7□□□□□ -0.06
COL6A3-203ENST00000353578 ZKSCAN5Q9Y2L8 839 aa14.7□□□□□ -0.06
COL6A3-203ENST00000353578 CYP46A1Q9Y6A2 500 aa14.7□□□□□ -0.06
COL6A3-203ENST00000353578 RBBP5Q15291 538 aaKnown RBP14.7□□□□□ -0.06
COL6A3-203ENST00000353578 CLIP2Q9UDT6 1046 aa14.7□□□□□ -0.06
COL6A3-203ENST00000353578 PPFIA3O75145 1194 aa14.7□□□□□ -0.06
COL6A3-203ENST00000353578 CEP135Q66GS9 1140 aa14.7□□□□□ -0.06
COL6A3-203ENST00000353578 SPA17Q15506 151 aa14.7□□□□□ -0.06
COL6A3-203ENST00000353578 PLEKHG5O94827 1062 aa14.7□□□□□ -0.06
COL6A3-203ENST00000353578 CCDC121Q6ZUS5 278 aa14.7□□□□□ -0.06
COL6A3-203ENST00000353578 SYCE3A1L190 88 aa14.7□□□□□ -0.06
COL6A3-203ENST00000353578 PAFAH1B1P43034 410 aa14.7□□□□□ -0.06
COL6A3-203ENST00000353578 UTP14CQ5TAP6 766 aaKnown RBP14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms