RNA–Protein interactions for RNA: ENST00000334218.9

CDC42BPA-201, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5 BASIC

Gene CDC42BPA, Length 10,134 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-201ENST00000334218 MATR3P43243 847 aaKnown RBP eCLIP7.14□□□□□ -1.275e-7■■■□□ 18.6
CDC42BPA-201ENST00000334218 INF2Q27J81 1249 aa7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 NBPF3Q9H094 633 aa7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 LUC7L2Q9Y383 392 aaKnown RBP7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 GFAPP14136 432 aa7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 ANKRD24Q8TF21 1146 aa7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 CC2D2AQ9P2K1 1620 aa7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 WDHD1O75717 1129 aaPredicted RBP7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 OPTNQ96CV9 577 aa7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 VIMP08670 466 aaKnown RBP7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 PHLDB2Q86SQ0 1253 aa7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 BRMS1Q9HCU9 246 aa7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 TCEAL9Q9UHQ7 104 aa7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 FHAD1B1AJZ9 1412 aa7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 CCDC73Q6ZRK6 1079 aa7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 RBM33Q96EV2 1170 aaKnown RBP7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 CAPZA3Q96KX2 299 aa7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 EIF2AQ9BY44 585 aaKnown RBP7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 TDRD9Q8NDG6 1382 aaKnown RBP7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 TTC36A6NLP5 189 aa7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 RASSF4Q9H2L5 321 aa7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 ERICH4A6NGS2 130 aa7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 ZFXP17010 805 aaPredicted RBP7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 EFCAB2Q5VUJ9 269 aa7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 MPHOSPH6Q99547 160 aaKnown RBP7.14□□□□□ -1.27
CDC42BPA-201ENST00000334218 TERF1P54274 439 aa7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 MAP7Q14244 749 aa7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 GRIPAP1Q4V328 841 aa7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 C6orf163Q5TEZ5 329 aa7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 CEP57Q86XR8 500 aa7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 TTC14Q96N46 770 aa7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 TNNT1P13805 278 aa7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 ATP6V1AP38606 617 aa7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 A0A1B0GUL7 405 aa7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 CHGAP10645 457 aaKnown RBP7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 PIK3R5Q8WYR1 880 aa7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 LOC105371045A0A1W2PR82 267 aa7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 NBPF7P0C2Y1 421 aaPredicted RBP7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 MYSM1Q5VVJ2 828 aa7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 PRPF31Q8WWY3 499 aaKnown RBP7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 CENPJQ9HC77 1338 aaPredicted RBP7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 PDCD2Q16342 344 aaPredicted RBP7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 PALM2Q8IXS6 379 aa7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 TRIM21P19474 475 aaKnown RBP7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 MCM5P33992 734 aa7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 ZKSCAN8Q15776 578 aaPredicted RBP7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 CXorf38Q8TB03 319 aa7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 R3HCC1Q9Y3T6 440 aaKnown RBP7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 NINLQ9Y2I6 1382 aa7.13□□□□□ -1.27
CDC42BPA-201ENST00000334218 ATICP31939 592 aa7.12□□□□□ -1.27
CDC42BPA-201ENST00000334218 HMGXB3Q12766 1538 aa7.12□□□□□ -1.27
CDC42BPA-201ENST00000334218 FEZ2Q9UHY8 353 aaPredicted RBP7.12□□□□□ -1.27
CDC42BPA-201ENST00000334218 DIABLOQ9NR28 239 aa7.12□□□□□ -1.27
CDC42BPA-201ENST00000334218 CFAP65Q6ZU64 1925 aaKnown RBP7.12□□□□□ -1.27
CDC42BPA-201ENST00000334218 SMC2O95347 1197 aa7.12□□□□□ -1.27
CDC42BPA-201ENST00000334218 GOLGA3Q08378 1498 aa7.12□□□□□ -1.27
CDC42BPA-201ENST00000334218 CFDP1Q9UEE9 299 aaPredicted RBP7.12□□□□□ -1.27
CDC42BPA-201ENST00000334218 POTEB2H3BUK9 544 aa7.12□□□□□ -1.27
CDC42BPA-201ENST00000334218 ZNF131P52739 623 aa7.12□□□□□ -1.27
CDC42BPA-201ENST00000334218 GFM2Q969S9 779 aaKnown RBP7.12□□□□□ -1.27
CDC42BPA-201ENST00000334218 PPP1R12AO14974 1030 aaPredicted RBP7.12□□□□□ -1.27
CDC42BPA-201ENST00000334218 SPC24Q8NBT2 197 aa7.12□□□□□ -1.27
CDC42BPA-201ENST00000334218 MYO10Q9HD67 2058 aa7.12□□□□□ -1.27
CDC42BPA-201ENST00000334218 ANKRD62A6NC57 917 aa7.12□□□□□ -1.27
CDC42BPA-201ENST00000334218 SLC4A10Q6U841 1118 aa7.12□□□□□ -1.27
CDC42BPA-201ENST00000334218 DDX27Q96GQ7 796 aaKnown RBP7.12□□□□□ -1.27
CDC42BPA-201ENST00000334218 NAT10Q9H0A0 1025 aaKnown RBP7.12□□□□□ -1.27
CDC42BPA-201ENST00000334218 RWDD1Q9H446 243 aaPredicted RBP7.12□□□□□ -1.27
CDC42BPA-201ENST00000334218 LUC7LQ9NQ29 371 aaKnown RBP7.12□□□□□ -1.27
CDC42BPA-201ENST00000334218 TMED1Q13445 227 aa7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 HOMER1Q86YM7 354 aa7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 DIAPH1O60610 1272 aaKnown RBP7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 SPECC1LQ69YQ0 1117 aa7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 CCDC110Q8TBZ0 833 aa7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 SEC62Q99442 399 aaKnown RBP7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 EIF3DO15371 548 aaKnown RBP eCLIP7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 TSG101Q99816 390 aa7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 ATAD2Q6PL18 1390 aa7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 MAP2K2P36507 400 aa7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 MRC2Q9UBG0 1479 aa7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 DDX23Q9BUQ8 820 aaKnown RBP7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 STMN4Q9H169 189 aaPredicted RBP7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 NUB1Q9Y5A7 615 aa7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 EPB41L2O43491 1005 aaKnown RBP7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 CCDC40Q4G0X9 1142 aa7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 LRRC23Q53EV4 343 aaPredicted RBP7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 NEK1Q96PY6 1258 aa7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 VCXQ9H320 206 aa7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 SMARCE1Q969G3 411 aa7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 GOPCQ9HD26 462 aa7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 BMS1Q14692 1282 aaKnown RBP7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 SMYD5Q6GMV2 418 aa7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 TUBB1Q9H4B7 451 aa7.11□□□□□ -1.27
CDC42BPA-201ENST00000334218 LUC7L3O95232 432 aaKnown RBP7.1□□□□□ -1.27
CDC42BPA-201ENST00000334218 EFCC1Q9HA90 598 aa7.1□□□□□ -1.27
CDC42BPA-201ENST00000334218 BICD2Q8TD16 824 aa7.1□□□□□ -1.27
CDC42BPA-201ENST00000334218 SOX12O15370 315 aa7.1□□□□□ -1.27
CDC42BPA-201ENST00000334218 KCNJ4P48050 445 aa7.1□□□□□ -1.27
CDC42BPA-201ENST00000334218 CCDC102AQ96A19 550 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms